Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00330 * 2 1 4 4 O 1.20830 * 120.00154 * 359.97438 * 3 2 1 5 5 C 1.50704 * 120.00118 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.47015 * 179.97438 * 5 3 2 7 7 C 1.37092 * 120.00081 * 273.91725 * 6 5 3 8 8 H 1.07997 * 120.00221 * 359.71623 * 7 6 5 9 9 C 1.38954 * 119.99609 * 179.72256 * 7 6 5 10 10 N 1.31404 * 120.00172 * 67.34649 * 9 7 6 11 11 Si 1.86807 * 119.99652 * 247.34046 * 9 7 6 12 12 H 1.48496 * 109.46984 * 60.00233 * 11 9 7 13 13 H 1.48501 * 109.47046 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47146 * 300.00190 * 11 9 7 15 15 C 1.34778 * 119.99825 * 93.91660 * 6 5 3 16 16 O 1.21291 * 120.00191 * 187.00662 * 15 6 5 17 17 C 1.50703 * 119.99727 * 7.28412 * 15 6 5 18 18 H 1.08993 * 109.47550 * 357.50459 * 17 15 6 19 19 C 1.53001 * 109.47352 * 117.51212 * 17 15 6 20 20 O 1.42904 * 109.47000 * 237.50993 * 17 15 6 21 21 C 1.42896 * 114.00323 * 150.00371 * 20 17 15 22 22 C 1.50698 * 109.47307 * 180.02562 * 21 20 17 23 23 C 1.38245 * 119.96973 * 269.72345 * 22 21 20 24 24 C 1.38202 * 120.02144 * 179.72786 * 23 22 21 25 25 C 1.38452 * 119.97387 * 0.56628 * 24 23 22 26 26 F 1.35103 * 120.02492 * 179.68769 * 25 24 23 27 27 C 1.38456 * 119.95252 * 359.70392 * 25 24 23 28 28 C 1.38197 * 119.97084 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47025 * 59.99808 * 1 2 3 30 30 H 1.08996 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46553 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47162 * 60.00225 * 5 3 2 33 33 H 1.08997 * 109.46787 * 299.99919 * 5 3 2 34 34 H 0.97005 * 119.99758 * 184.88222 * 10 9 7 35 35 H 1.08995 * 109.47541 * 186.64590 * 19 17 15 36 36 H 1.09001 * 109.46646 * 306.64627 * 19 17 15 37 37 H 1.08997 * 109.47139 * 66.64118 * 19 17 15 38 38 H 1.09008 * 109.46798 * 299.99631 * 21 20 17 39 39 H 1.09000 * 109.47240 * 59.99566 * 21 20 17 40 40 H 1.08000 * 119.99284 * 359.97438 * 23 22 21 41 41 H 1.08000 * 120.01031 * 180.25226 * 24 23 22 42 42 H 1.07994 * 120.01601 * 179.97438 * 27 25 24 43 43 H 1.08006 * 119.98687 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.0980 3.3597 -1.1858 8 1 3.8877 2.8585 -2.1190 9 6 4.4864 4.6938 -1.1857 10 7 5.7040 5.0237 -0.8179 11 14 3.2776 6.0185 -1.7088 12 1 2.0934 5.9896 -0.8132 13 1 3.9324 7.3485 -1.6216 14 1 2.8462 5.7704 -3.1079 15 6 4.2498 3.3035 1.1632 16 8 4.4695 4.4963 1.1755 17 6 4.2826 2.5179 2.4488 18 1 4.0241 1.4786 2.2463 19 6 5.6869 2.5859 3.0524 20 8 3.3410 3.0721 3.3699 21 6 2.7858 2.1186 4.2779 22 6 1.8111 2.8085 5.1971 23 6 2.2500 3.3408 6.3951 24 6 1.3581 3.9787 7.2363 25 6 0.0225 4.0743 6.8842 26 9 -0.8515 4.6921 7.7087 27 6 -0.4169 3.5359 5.6867 28 6 0.4778 2.9034 4.8445 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 3.9558 0.7808 -0.8909 33 1 3.9564 0.7804 0.8891 34 1 5.9536 5.9586 -0.7497 35 1 5.7435 1.9240 3.9165 36 1 6.4182 2.2736 2.3069 37 1 5.8994 3.6087 3.3636 38 1 2.2673 1.3413 3.7165 39 1 3.5855 1.6693 4.8668 40 1 3.2909 3.2616 6.6720 41 1 1.7019 4.3980 8.1703 42 1 -1.4585 3.6095 5.4112 43 1 0.1352 2.4829 3.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449960842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -159.565347 kcal Electronic energy + Delta-G solvation = -30296.440459 eV Core-core repulsion = 25836.858345 eV Total energy + Delta-G solvation = -4459.582114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.97520 -41.59025 -40.60549 -40.07785 -38.39748 -37.41262 -35.95183 -34.47747 -33.05190 -32.17449 -31.45926 -30.10292 -27.92225 -27.15216 -26.69321 -24.40088 -24.08528 -22.53453 -22.40039 -21.05418 -19.13697 -18.73680 -18.69310 -18.11124 -17.84974 -17.51246 -17.35335 -16.98598 -16.69557 -16.64890 -16.41605 -16.14175 -15.70417 -15.29979 -14.98671 -14.56413 -14.53654 -14.46130 -14.38062 -14.07975 -13.91529 -13.84706 -13.29286 -13.23690 -13.14619 -13.06022 -12.94657 -12.88245 -12.61541 -12.41946 -12.15679 -12.03540 -11.86216 -11.72022 -11.64579 -10.91965 -10.66434 -10.25985 -10.13075 -9.73017 -9.21809 -8.72764 -5.55340 -0.01832 0.21203 1.27507 1.27855 1.39702 1.48497 1.58014 2.16167 2.22964 2.48511 2.79822 2.97932 3.19900 3.35809 3.61895 3.67440 3.82858 3.87443 3.95492 4.05091 4.13588 4.22280 4.27311 4.33404 4.37136 4.39027 4.44266 4.51862 4.56121 4.73799 4.78650 4.89050 4.90449 4.93526 5.06682 5.17357 5.31923 5.40732 5.44833 5.48112 5.81422 5.83920 6.23746 6.78381 6.87351 7.15996 7.55624 8.23084 8.36474 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010093 B = 0.003928 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.538577 B = 7126.895493 C = 7917.271897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.437 3.563 4 O -0.527 6.527 5 C 0.108 3.892 6 N -0.424 5.424 7 C -0.454 4.454 8 H 0.098 0.902 9 C 0.140 3.860 10 N -0.738 5.738 11 Si 0.856 3.144 12 H -0.312 1.312 13 H -0.287 1.287 14 H -0.261 1.261 15 C 0.415 3.585 16 O -0.583 6.583 17 C 0.085 3.915 18 H 0.096 0.904 19 C -0.150 4.150 20 O -0.389 6.389 21 C 0.093 3.907 22 C -0.110 4.110 23 C -0.070 4.070 24 C -0.157 4.157 25 C 0.085 3.915 26 F -0.146 7.146 27 C -0.162 4.162 28 C -0.081 4.081 29 H 0.050 0.950 30 H 0.140 0.860 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.270 0.730 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.149 0.851 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -15.052 13.000 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.279 3.721 4 O -0.414 6.414 5 C -0.017 4.017 6 N -0.144 5.144 7 C -0.573 4.573 8 H 0.116 0.884 9 C -0.082 4.082 10 N -0.365 5.365 11 Si 0.680 3.320 12 H -0.241 1.241 13 H -0.213 1.213 14 H -0.186 1.186 15 C 0.206 3.794 16 O -0.466 6.466 17 C 0.025 3.975 18 H 0.114 0.886 19 C -0.207 4.207 20 O -0.309 6.309 21 C 0.018 3.982 22 C -0.110 4.110 23 C -0.088 4.088 24 C -0.175 4.175 25 C 0.066 3.934 26 F -0.124 7.124 27 C -0.181 4.181 28 C -0.099 4.099 29 H 0.069 0.931 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.166 0.834 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.094 -13.878 13.000 19.968 hybrid contribution -1.303 1.387 -0.401 1.945 sum -7.396 -12.490 12.598 19.221 Atomic orbital electron populations 1.23496 0.75507 1.05609 1.01908 1.86495 1.24425 1.32213 1.84174 1.25126 0.93552 0.81404 0.72013 1.90725 1.67519 1.38012 1.45168 1.21414 0.86476 0.85252 1.08572 1.43386 1.56485 1.09261 1.05313 1.18592 1.57245 0.95719 0.85743 0.88427 1.24702 0.93163 0.98727 0.91626 1.70601 1.17089 1.19985 1.28839 0.87112 0.85070 0.81470 0.78330 1.24107 1.21349 1.18607 1.20360 0.85583 0.88552 0.84877 1.90497 1.53455 1.17138 1.85494 1.22084 0.91370 0.96727 0.87356 0.88615 1.22016 0.94100 1.02682 1.01942 1.88131 1.59493 1.35996 1.47288 1.21625 0.95472 0.90472 0.90659 1.19888 0.94081 1.01322 0.95710 1.21219 1.00750 0.94379 0.92459 1.21401 0.91163 1.02260 1.02680 1.17963 0.88121 0.97373 0.89986 1.91479 1.68978 1.80671 1.71314 1.21303 1.02036 1.00942 0.93794 1.21104 0.92817 0.97213 0.98772 0.93127 0.84225 0.92482 0.84290 0.83519 0.91952 0.88195 0.91372 0.93838 0.91544 0.89059 0.82579 0.82365 0.83352 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -9.47 10.56 -51.37 -0.54 -10.02 16 3 C 0.44 15.39 8.01 71.24 0.57 15.97 16 4 O -0.53 -24.20 16.12 21.95 0.35 -23.85 16 5 C 0.11 3.62 5.87 85.63 0.50 4.12 16 6 N -0.42 -20.41 2.14 -639.58 -1.37 -21.78 16 7 C -0.45 -25.10 9.43 84.04 0.79 -24.31 16 8 H 0.10 5.20 8.06 -2.91 -0.02 5.18 16 9 C 0.14 8.17 3.13 84.93 0.27 8.43 16 10 N -0.74 -43.59 12.21 21.66 0.26 -43.33 16 11 Si 0.86 47.04 29.62 68.60 2.03 49.07 16 12 H -0.31 -19.11 7.11 99.48 0.71 -18.40 16 13 H -0.29 -15.38 7.11 99.48 0.71 -14.68 16 14 H -0.26 -13.34 7.11 99.48 0.71 -12.63 16 15 C 0.42 20.90 6.57 87.66 0.58 21.48 16 16 O -0.58 -35.71 13.37 3.99 0.05 -35.66 16 17 C 0.09 3.08 2.84 29.85 0.08 3.17 16 18 H 0.10 2.64 4.87 -2.39 -0.01 2.63 16 19 C -0.15 -4.65 9.45 71.98 0.68 -3.97 16 20 O -0.39 -14.58 9.95 -141.93 -1.41 -16.00 16 21 C 0.09 2.34 5.87 71.24 0.42 2.76 16 22 C -0.11 -2.79 5.51 -19.86 -0.11 -2.90 16 23 C -0.07 -1.53 9.70 22.26 0.22 -1.31 16 24 C -0.16 -3.32 10.03 22.31 0.22 -3.10 16 25 C 0.08 2.03 7.30 22.37 0.16 2.20 16 26 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 27 C -0.16 -3.88 10.03 22.31 0.22 -3.66 16 28 C -0.08 -2.08 9.70 22.26 0.22 -1.86 16 29 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.14 3.96 8.07 -2.39 -0.02 3.94 16 33 H 0.15 3.55 5.47 -2.39 -0.01 3.54 16 34 H 0.27 15.42 8.32 -92.70 -0.77 14.64 16 35 H 0.10 2.11 8.03 -2.39 -0.02 2.09 16 36 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.48 8.03 -2.38 -0.02 1.46 16 39 H 0.09 1.67 7.98 -2.39 -0.02 1.65 16 40 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 41 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -84.32 378.29 7.21 -77.11 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.03 Total: 8.45 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.02 Total: 18.80 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.10 Total: -65.11 kcal Atomic # 8 Polarization: -83.97 SS G_CDS: -1.55 Total: -85.52 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -84.32 7.21 -77.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449960842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.459 kcal (2) G-P(sol) polarization free energy of solvation -84.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds