Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35907 * 116.99856 * 2 1 4 4 C 1.38755 * 120.05694 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94212 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05536 * 359.74556 * 5 4 3 7 7 C 1.38241 * 120.11506 * 0.51292 * 6 5 4 8 8 C 1.50702 * 119.97760 * 179.76355 * 7 6 5 9 9 N 1.46505 * 109.46805 * 269.72550 * 8 7 6 10 10 C 1.46491 * 119.99906 * 274.99390 * 9 8 7 11 11 S 1.65598 * 119.99887 * 95.00166 * 9 8 7 12 12 O 1.42097 * 104.27501 * 206.06439 * 11 9 8 13 13 O 1.42092 * 104.27698 * 333.92286 * 11 9 8 14 14 C 1.81398 * 104.45253 * 89.99560 * 11 9 8 15 15 C 1.52999 * 109.47307 * 173.98196 * 14 11 9 16 16 C 1.50696 * 115.55186 * 65.19595 * 15 14 11 17 17 H 1.07992 * 120.00561 * 264.78735 * 16 15 14 18 18 C 1.37880 * 119.99617 * 84.78809 * 16 15 14 19 19 N 1.31518 * 120.00073 * 352.22728 * 18 16 15 20 20 Si 1.86799 * 120.00124 * 172.23236 * 18 16 15 21 21 H 1.48497 * 109.47130 * 89.99469 * 20 18 16 22 22 H 1.48497 * 109.47408 * 210.00172 * 20 18 16 23 23 H 1.48507 * 109.46581 * 329.99746 * 20 18 16 24 24 C 1.53001 * 117.49434 * 279.53002 * 15 14 11 25 25 C 1.53004 * 117.49635 * 210.87089 * 15 14 11 26 26 C 1.38173 * 120.05283 * 359.48899 * 7 6 5 27 27 H 1.08991 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46899 * 300.00711 * 1 2 3 29 29 H 1.09000 * 109.46722 * 59.99837 * 1 2 3 30 30 H 1.08002 * 120.02720 * 359.96046 * 4 3 2 31 31 H 1.08001 * 119.97534 * 180.02562 * 5 4 3 32 32 H 1.08002 * 119.94657 * 180.27366 * 6 5 4 33 33 H 1.09004 * 109.46927 * 29.72051 * 8 7 6 34 34 H 1.08993 * 109.47275 * 149.72351 * 8 7 6 35 35 H 1.09000 * 109.47503 * 90.00451 * 10 9 8 36 36 H 1.09002 * 109.47411 * 210.00296 * 10 9 8 37 37 H 1.09006 * 109.47649 * 330.00750 * 10 9 8 38 38 H 1.08996 * 109.47051 * 293.98170 * 14 11 9 39 39 H 1.09002 * 109.47099 * 53.98129 * 14 11 9 40 40 H 0.96999 * 119.99517 * 185.03419 * 19 18 16 41 41 H 1.09001 * 117.50370 * 359.97438 * 24 15 14 42 42 H 1.09000 * 117.49924 * 145.02324 * 24 15 14 43 43 H 1.09006 * 117.49636 * 214.97537 * 25 15 14 44 44 H 1.08994 * 117.50168 * 359.97438 * 25 15 14 45 45 H 1.08002 * 120.02540 * 180.23491 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5609 2.5981 0.0009 9 7 6.0488 2.6248 -1.3802 10 6 6.2567 1.3706 -2.1080 11 16 6.3655 4.0729 -2.1186 12 8 6.2014 3.8030 -3.5041 13 8 5.5229 4.9998 -1.4480 14 6 8.1076 4.4043 -1.7368 15 6 8.5671 5.6522 -2.4935 16 6 7.8988 6.9408 -2.0886 17 1 7.0429 7.3015 -2.6394 18 6 8.3803 7.6592 -1.0148 19 7 9.3217 7.1490 -0.2511 20 14 7.6954 9.3572 -0.6444 21 1 6.5364 9.2336 0.2757 22 1 8.7482 10.1871 -0.0057 23 1 7.2572 10.0007 -1.9090 24 6 8.9463 5.4855 -3.9663 25 6 10.0357 5.7207 -2.9170 26 6 3.4311 1.2848 -0.0001 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3204 0.0003 31 1 1.3341 4.5114 0.0019 32 1 3.7923 4.6380 0.0113 33 1 5.8757 3.5063 0.5151 34 1 5.9714 1.7289 0.5146 35 1 5.3398 1.0970 -2.6300 36 1 7.0619 1.4993 -2.8313 37 1 6.5231 0.5819 -1.4042 38 1 8.2199 4.5675 -0.6650 39 1 8.7147 3.5514 -2.0401 40 1 9.6089 7.6216 0.5457 41 1 8.8688 4.4868 -4.3961 42 1 8.7128 6.3080 -4.6424 43 1 10.5185 6.6979 -2.9032 44 1 10.6746 4.8770 -2.6562 45 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450972194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -52.773082 kcal Electronic energy + Delta-G solvation = -28087.989803 eV Core-core repulsion = 24199.251725 eV Total energy + Delta-G solvation = -3888.738078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14367 -37.91172 -36.75465 -36.27204 -35.72151 -35.00442 -32.04892 -31.40893 -30.35155 -28.15994 -27.51839 -27.06974 -25.48790 -24.40373 -22.48723 -21.22101 -21.11981 -19.55720 -18.36121 -17.78580 -17.02341 -16.45017 -16.23611 -15.90271 -15.77514 -15.67846 -15.22715 -14.68986 -14.39531 -14.16028 -13.91810 -13.76071 -13.55679 -13.14475 -12.94090 -12.64172 -12.54299 -12.15562 -11.94118 -11.83421 -11.81616 -11.51965 -11.24645 -11.20467 -11.05060 -10.98909 -10.94727 -10.90759 -10.77460 -10.56821 -10.45222 -10.11263 -9.72950 -8.97868 -8.92100 -8.80176 -8.56806 -8.14545 -8.06079 -6.14584 -4.25008 0.97952 1.38172 1.55454 3.16654 3.30044 3.34154 3.35830 3.40864 3.89222 4.36501 4.62713 4.74997 4.80170 4.88205 4.89854 4.94247 4.99509 5.13152 5.15681 5.19792 5.24485 5.34804 5.49113 5.57080 5.60965 5.70655 5.72735 5.76016 5.91841 5.97311 6.05852 6.15698 6.27554 6.31590 6.38199 6.60134 6.61060 6.71492 6.74483 6.82503 6.87371 6.99039 7.24450 7.37487 7.38485 7.79821 8.20147 8.80482 9.46027 10.93062 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.003546 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.359175 B = 7894.450729 C = 8920.857430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.112 3.888 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.128 4.128 7 C -0.068 4.068 8 C 0.164 3.836 9 N -1.009 6.009 10 C 0.097 3.903 11 S 2.604 3.396 12 O -0.970 6.970 13 O -0.943 6.943 14 C -0.555 4.555 15 C 0.044 3.956 16 C -0.515 4.515 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.875 5.875 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.270 1.270 24 C -0.209 4.209 25 C -0.142 4.142 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -13.848 2.857 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.226 4.226 5 C -0.105 4.105 6 C -0.147 4.147 7 C -0.070 4.070 8 C 0.039 3.961 9 N -0.845 5.845 10 C -0.049 4.049 11 S 2.702 3.298 12 O -0.961 6.961 13 O -0.933 6.933 14 C -0.687 4.687 15 C 0.042 3.958 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.195 1.195 24 C -0.246 4.246 25 C -0.181 4.181 26 C -0.155 4.155 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.166 0.834 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.213 -13.524 2.492 17.744 hybrid contribution 0.002 0.711 0.641 0.957 sum -11.211 -12.813 3.133 17.311 Atomic orbital electron populations 1.23001 0.78771 1.03582 1.01264 1.86043 1.21076 1.27175 1.89186 1.18943 0.92286 0.83971 0.98045 1.21222 0.99690 0.92587 1.09128 1.21000 0.94847 0.96861 0.97743 1.21526 0.93679 0.99761 0.99715 1.20114 0.96495 0.92363 0.98068 1.20156 0.88996 1.04212 0.82740 1.57962 1.80590 1.22939 1.22963 1.21377 1.01398 0.85982 0.96146 1.05382 0.78573 0.71913 0.73883 1.93490 1.86567 1.83811 1.32185 1.93493 1.64038 1.60681 1.75125 1.30034 1.21129 1.05798 1.11785 1.18280 0.96437 0.91303 0.89815 1.20515 1.14958 1.04202 1.15581 0.91368 1.24946 0.93848 0.97927 0.95522 1.69981 1.28475 1.38842 1.13695 0.86590 0.78803 0.83871 0.78977 1.20011 1.21102 1.19456 1.23201 1.07095 1.00763 0.93563 1.22558 0.92145 1.00821 1.02558 1.20246 0.91130 0.98013 1.06130 0.88508 0.92826 0.92786 0.85870 0.85719 0.83376 0.88492 0.89675 0.92873 0.91236 0.91474 0.84840 0.88514 0.92735 0.90733 0.89529 0.89577 0.91541 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.79 10.50 -19.45 -0.20 -4.00 16 3 C 0.11 1.47 6.69 -39.22 -0.26 1.21 16 4 C -0.21 -2.57 9.04 -39.43 -0.36 -2.93 16 5 C -0.09 -1.18 10.04 -39.61 -0.40 -1.57 16 6 C -0.13 -2.00 9.11 -39.56 -0.36 -2.36 16 7 C -0.07 -1.00 5.46 -104.64 -0.57 -1.57 16 8 C 0.16 2.27 5.43 -5.19 -0.03 2.24 16 9 N -1.01 -15.65 3.10 -123.05 -0.38 -16.03 16 10 C 0.10 1.23 10.24 59.84 0.61 1.84 16 11 S 2.60 52.54 5.06 -107.50 -0.54 52.00 16 12 O -0.97 -21.59 17.09 -57.54 -0.98 -22.58 16 13 O -0.94 -21.29 14.50 -57.54 -0.83 -22.13 16 14 C -0.55 -11.53 6.03 37.16 0.22 -11.30 16 15 C 0.04 1.06 1.32 -155.66 -0.21 0.86 16 16 C -0.52 -13.94 8.18 -34.44 -0.28 -14.22 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C 0.08 2.22 5.38 -17.82 -0.10 2.13 16 19 N -0.87 -23.72 12.98 55.43 0.72 -23.00 16 20 Si 0.89 21.10 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.21 -4.59 9.96 -26.69 -0.27 -4.86 16 25 C -0.14 -3.22 9.49 -26.69 -0.25 -3.47 16 26 C -0.14 -1.82 9.64 -39.43 -0.38 -2.20 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.15 2.56 6.50 -52.49 -0.34 2.21 16 33 H 0.10 1.37 7.55 -51.93 -0.39 0.98 16 34 H 0.08 0.90 7.91 -51.93 -0.41 0.48 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 37 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 38 H 0.13 2.86 8.14 -51.93 -0.42 2.44 16 39 H 0.10 1.71 8.09 -51.92 -0.42 1.29 16 40 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 386.56 15.07 5.83 5.83 Total: -1.00 -32.79 386.56 -9.91 -42.71 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.86 Total: 6.11 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: -1.63 Total: -34.99 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.34 Total: -39.04 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -2.02 Total: -48.70 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.54 Total: 52.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.79 -9.91 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450972194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.067 kcal (2) G-P(sol) polarization free energy of solvation -32.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds