Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35907 * 116.99856 * 2 1 4 4 C 1.38755 * 120.05694 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94212 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05536 * 359.74556 * 5 4 3 7 7 C 1.38241 * 120.11506 * 0.51292 * 6 5 4 8 8 C 1.50702 * 119.97760 * 179.76355 * 7 6 5 9 9 N 1.46505 * 109.46805 * 269.72550 * 8 7 6 10 10 C 1.46491 * 119.99906 * 274.99390 * 9 8 7 11 11 S 1.65598 * 119.99887 * 95.00166 * 9 8 7 12 12 O 1.42097 * 104.27501 * 206.06439 * 11 9 8 13 13 O 1.42092 * 104.27698 * 333.92286 * 11 9 8 14 14 C 1.81398 * 104.45253 * 89.99560 * 11 9 8 15 15 C 1.52999 * 109.47307 * 173.98196 * 14 11 9 16 16 C 1.50696 * 115.55186 * 65.19595 * 15 14 11 17 17 H 1.07992 * 120.00561 * 264.78735 * 16 15 14 18 18 C 1.37880 * 119.99617 * 84.78809 * 16 15 14 19 19 N 1.31518 * 120.00073 * 352.22728 * 18 16 15 20 20 Si 1.86799 * 120.00124 * 172.23236 * 18 16 15 21 21 H 1.48497 * 109.47130 * 89.99469 * 20 18 16 22 22 H 1.48497 * 109.47408 * 210.00172 * 20 18 16 23 23 H 1.48507 * 109.46581 * 329.99746 * 20 18 16 24 24 C 1.53001 * 117.49434 * 279.53002 * 15 14 11 25 25 C 1.53004 * 117.49635 * 210.87089 * 15 14 11 26 26 C 1.38173 * 120.05283 * 359.48899 * 7 6 5 27 27 H 1.08991 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46899 * 300.00711 * 1 2 3 29 29 H 1.09000 * 109.46722 * 59.99837 * 1 2 3 30 30 H 1.08002 * 120.02720 * 359.96046 * 4 3 2 31 31 H 1.08001 * 119.97534 * 180.02562 * 5 4 3 32 32 H 1.08002 * 119.94657 * 180.27366 * 6 5 4 33 33 H 1.09004 * 109.46927 * 29.72051 * 8 7 6 34 34 H 1.08993 * 109.47275 * 149.72351 * 8 7 6 35 35 H 1.09000 * 109.47503 * 90.00451 * 10 9 8 36 36 H 1.09002 * 109.47411 * 210.00296 * 10 9 8 37 37 H 1.09006 * 109.47649 * 330.00750 * 10 9 8 38 38 H 1.08996 * 109.47051 * 293.98170 * 14 11 9 39 39 H 1.09002 * 109.47099 * 53.98129 * 14 11 9 40 40 H 0.96999 * 119.99517 * 185.03419 * 19 18 16 41 41 H 1.09001 * 117.50370 * 359.97438 * 24 15 14 42 42 H 1.09000 * 117.49924 * 145.02324 * 24 15 14 43 43 H 1.09006 * 117.49636 * 214.97537 * 25 15 14 44 44 H 1.08994 * 117.50168 * 359.97438 * 25 15 14 45 45 H 1.08002 * 120.02540 * 180.23491 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9209 3.6048 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5609 2.5981 0.0009 9 7 6.0488 2.6248 -1.3802 10 6 6.2567 1.3706 -2.1080 11 16 6.3655 4.0729 -2.1186 12 8 6.2014 3.8030 -3.5041 13 8 5.5229 4.9998 -1.4480 14 6 8.1076 4.4043 -1.7368 15 6 8.5671 5.6522 -2.4935 16 6 7.8988 6.9408 -2.0886 17 1 7.0429 7.3015 -2.6394 18 6 8.3803 7.6592 -1.0148 19 7 9.3217 7.1490 -0.2511 20 14 7.6954 9.3572 -0.6444 21 1 6.5364 9.2336 0.2757 22 1 8.7482 10.1871 -0.0057 23 1 7.2572 10.0007 -1.9090 24 6 8.9463 5.4855 -3.9663 25 6 10.0357 5.7207 -2.9170 26 6 3.4311 1.2848 -0.0001 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3204 0.0003 31 1 1.3341 4.5114 0.0019 32 1 3.7923 4.6380 0.0113 33 1 5.8757 3.5063 0.5151 34 1 5.9714 1.7289 0.5146 35 1 5.3398 1.0970 -2.6300 36 1 7.0619 1.4993 -2.8313 37 1 6.5231 0.5819 -1.4042 38 1 8.2199 4.5675 -0.6650 39 1 8.7147 3.5514 -2.0401 40 1 9.6089 7.6216 0.5457 41 1 8.8688 4.4868 -4.3961 42 1 8.7128 6.3080 -4.6424 43 1 10.5185 6.6979 -2.9032 44 1 10.6746 4.8770 -2.6562 45 1 4.0207 0.3799 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450972194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -73.201368 kcal Electronic energy + Delta-G solvation = -28088.875640 eV Core-core repulsion = 24199.251725 eV Total energy + Delta-G solvation = -3889.623915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08133 -38.89548 -38.55294 -37.92621 -36.89357 -36.60899 -34.08089 -32.44693 -31.30735 -29.83767 -28.39941 -27.93102 -27.49553 -25.52928 -23.49995 -22.99616 -22.14125 -21.37896 -19.78802 -18.84382 -18.40489 -18.28338 -17.28008 -17.03879 -16.87142 -16.79150 -16.60182 -16.57461 -15.70988 -15.58367 -15.40989 -14.90230 -14.82785 -14.49528 -13.92492 -13.80148 -13.72318 -13.62623 -13.52070 -13.12512 -13.10430 -12.90996 -12.85906 -12.83663 -12.59311 -12.45645 -12.38778 -12.23963 -12.19324 -11.94204 -11.86669 -11.75780 -11.54302 -10.87124 -10.54925 -10.20692 -9.90276 -9.73529 -9.13799 -8.18836 -6.33280 -0.54017 0.32153 0.50381 1.38706 1.41069 1.49527 1.98703 2.37547 2.39870 2.81637 3.04154 3.09289 3.36946 3.43553 3.74934 3.83431 3.89976 4.04426 4.19713 4.27101 4.32014 4.39932 4.41150 4.49541 4.50939 4.55431 4.58894 4.65846 4.73795 4.75703 4.78031 4.84256 4.96736 4.99244 5.03863 5.12385 5.20890 5.31757 5.46856 5.53204 5.58022 5.64071 5.72127 5.76595 5.81094 6.23244 6.47315 6.72496 7.38815 8.88206 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.003546 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.359175 B = 7894.450729 C = 8920.857430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.109 3.891 4 C -0.206 4.206 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.078 4.078 8 C 0.158 3.842 9 N -1.001 6.001 10 C 0.085 3.915 11 S 2.616 3.384 12 O -0.995 6.995 13 O -0.977 6.977 14 C -0.552 4.552 15 C 0.013 3.987 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.045 3.955 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.199 4.199 25 C -0.139 4.139 26 C -0.140 4.140 27 H 0.121 0.879 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.266 0.734 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 -16.295 3.234 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.064 3.936 4 C -0.224 4.224 5 C -0.113 4.113 6 C -0.179 4.179 7 C -0.080 4.080 8 C 0.033 3.967 9 N -0.838 5.838 10 C -0.060 4.060 11 S 2.714 3.286 12 O -0.986 6.986 13 O -0.967 6.967 14 C -0.685 4.685 15 C 0.011 3.989 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.158 4.158 19 N -0.527 5.527 20 Si 0.759 3.241 21 H -0.201 1.201 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.236 4.236 25 C -0.178 4.178 26 C -0.159 4.159 27 H 0.139 0.861 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.883 -15.965 2.858 20.106 hybrid contribution 0.101 1.371 0.520 1.469 sum -11.782 -14.594 3.378 19.058 Atomic orbital electron populations 1.23330 0.76628 1.05557 1.02101 1.86035 1.23302 1.26371 1.88850 1.19130 0.92556 0.84718 0.97227 1.21493 1.01145 0.91784 1.08017 1.21202 0.94273 0.98230 0.97593 1.21496 0.94908 0.99242 1.02227 1.20172 0.96755 0.92525 0.98524 1.20400 0.88974 1.05467 0.81810 1.57553 1.80240 1.22338 1.23707 1.21709 1.01615 0.85449 0.97194 1.04728 0.78027 0.72554 0.73274 1.93446 1.86754 1.84493 1.33872 1.93456 1.64825 1.62876 1.75561 1.29922 1.22383 1.05558 1.10613 1.18409 0.97305 0.91603 0.91633 1.20676 1.14724 1.06039 1.15708 0.93443 1.25489 0.94341 1.00440 0.95546 1.70021 1.29065 1.39707 1.13933 0.85916 0.78498 0.80972 0.78680 1.20083 1.19872 1.19552 1.23244 1.05872 1.01846 0.92642 1.22521 0.91849 1.00687 1.02722 1.20444 0.91734 0.98068 1.05643 0.86125 0.91723 0.92148 0.83129 0.84456 0.86150 0.89800 0.85599 0.93137 0.90813 0.87413 0.85875 0.85223 0.92522 0.88394 0.90064 0.91532 0.89330 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.94 10.50 -92.50 -0.97 -7.91 16 3 C 0.11 2.63 6.69 22.51 0.15 2.79 16 4 C -0.21 -4.76 9.04 22.36 0.20 -4.56 16 5 C -0.09 -2.57 10.04 22.25 0.22 -2.35 16 6 C -0.16 -5.14 9.11 22.28 0.20 -4.94 16 7 C -0.08 -2.22 5.46 -19.88 -0.11 -2.33 16 8 C 0.16 4.20 5.43 85.63 0.47 4.66 16 9 N -1.00 -29.73 3.10 -543.22 -1.68 -31.41 16 10 C 0.08 1.92 10.24 127.77 1.31 3.23 16 11 S 2.62 105.99 5.06 -56.49 -0.29 105.71 16 12 O -1.00 -44.22 17.09 -127.65 -2.18 -46.40 16 13 O -0.98 -45.93 14.50 -127.65 -1.85 -47.78 16 14 C -0.55 -22.69 6.03 71.98 0.43 -22.26 16 15 C 0.01 0.61 1.32 -52.93 -0.07 0.54 16 16 C -0.53 -29.62 8.18 25.60 0.21 -29.41 16 17 H 0.05 2.74 7.83 -2.91 -0.02 2.72 16 18 C 0.04 2.45 5.38 84.65 0.46 2.91 16 19 N -0.89 -48.79 12.98 21.45 0.28 -48.51 16 20 Si 0.93 43.90 29.55 68.60 2.03 45.93 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.20 -8.62 9.96 30.62 0.30 -8.32 16 25 C -0.14 -6.22 9.49 30.62 0.29 -5.93 16 26 C -0.14 -3.47 9.64 22.37 0.22 -3.25 16 27 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.66 7.66 -2.38 -0.02 0.65 16 29 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.12 4.49 6.50 -2.91 -0.02 4.47 16 33 H 0.08 2.43 7.55 -2.38 -0.02 2.41 16 34 H 0.13 2.26 7.91 -2.39 -0.02 2.25 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.61 7.79 -2.39 -0.02 1.59 16 37 H 0.11 1.57 7.94 -2.38 -0.02 1.55 16 38 H 0.12 5.31 8.14 -2.39 -0.02 5.29 16 39 H 0.13 4.31 8.09 -2.39 -0.02 4.29 16 40 H 0.27 13.81 8.32 -92.71 -0.77 13.04 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 44 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -72.13 386.56 1.71 -70.42 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.98 Total: 27.84 kcal Atomic # 6 Polarization: -73.29 SS G_CDS: 5.40 Total: -67.89 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.41 Total: -79.92 kcal Atomic # 8 Polarization: -97.08 SS G_CDS: -5.00 Total: -102.08 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 105.99 SS G_CDS: -0.29 Total: 105.71 kcal Total: -72.13 1.71 -70.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450972194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.778 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds