Wall clock time and date at job start Sat Apr 11 2020 05:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00295 * 2 1 4 4 C 1.38754 * 120.04896 * 359.72433 * 3 2 1 5 5 C 1.38126 * 119.93983 * 179.70563 * 4 3 2 6 6 C 1.38285 * 120.05627 * 0.58563 * 5 4 3 7 7 C 1.38250 * 120.11265 * 359.68789 * 6 5 4 8 8 C 1.50693 * 119.97474 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47634 * 269.98059 * 8 7 6 10 10 N 1.46494 * 109.47684 * 180.02562 * 9 8 7 11 11 S 1.65599 * 120.00319 * 165.00007 * 10 9 8 12 12 O 1.42103 * 104.27768 * 181.07059 * 11 10 9 13 13 O 1.42100 * 104.27404 * 308.92486 * 11 10 9 14 14 C 1.81397 * 104.45143 * 64.99923 * 11 10 9 15 15 C 1.52999 * 109.47240 * 173.81113 * 14 11 10 16 16 C 1.50699 * 115.54887 * 65.19289 * 15 14 11 17 17 H 1.07999 * 120.00050 * 264.78581 * 16 15 14 18 18 C 1.37876 * 120.00117 * 84.78318 * 16 15 14 19 19 N 1.31524 * 119.99936 * 352.23632 * 18 16 15 20 20 Si 1.86796 * 120.00277 * 172.23050 * 18 16 15 21 21 H 1.48498 * 109.47119 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47085 * 119.99990 * 20 18 16 23 23 H 1.48497 * 109.47472 * 240.00263 * 20 18 16 24 24 C 1.52996 * 117.49865 * 279.52501 * 15 14 11 25 25 C 1.52996 * 117.49765 * 210.86047 * 15 14 11 26 26 C 1.38166 * 120.05069 * 0.02562 * 7 6 5 27 27 H 1.08994 * 109.47340 * 300.00150 * 1 2 3 28 28 H 1.09005 * 109.46912 * 60.00630 * 1 2 3 29 29 H 1.08997 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.03343 * 359.96883 * 4 3 2 31 31 H 1.08004 * 119.97228 * 180.29692 * 5 4 3 32 32 H 1.07995 * 119.94490 * 179.70642 * 6 5 4 33 33 H 1.08999 * 109.46906 * 29.98273 * 8 7 6 34 34 H 1.09000 * 109.47206 * 149.97539 * 8 7 6 35 35 H 1.09008 * 109.46938 * 300.00229 * 9 8 7 36 36 H 1.09000 * 109.47249 * 59.99506 * 9 8 7 37 37 H 0.97006 * 119.99196 * 344.99607 * 10 9 8 38 38 H 1.09006 * 109.46788 * 293.81386 * 14 11 10 39 39 H 1.09003 * 109.47176 * 53.81175 * 14 11 10 40 40 H 0.97002 * 119.99990 * 185.02299 * 19 18 16 41 41 H 1.08996 * 117.50022 * 359.97438 * 24 15 14 42 42 H 1.08997 * 117.49944 * 145.02260 * 24 15 14 43 43 H 1.09002 * 117.49669 * 214.97554 * 25 15 14 44 44 H 1.08996 * 117.50204 * 359.97438 * 25 15 14 45 45 H 1.08000 * 120.02804 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5171 0.0001 8 6 5.5608 2.5982 0.0003 9 6 6.0704 2.6253 -1.4420 10 7 7.5332 2.7035 -1.4418 11 16 8.3802 2.3769 -2.8268 12 8 9.7418 2.5246 -2.4481 13 8 7.8724 1.1226 -3.2605 14 6 7.8929 3.6928 -3.9763 15 6 8.7300 3.5907 -5.2529 16 6 8.5109 2.3477 -6.0762 17 1 9.1627 1.4956 -5.9516 18 6 7.4782 2.2981 -6.9884 19 7 6.5937 3.2704 -7.0338 20 14 7.3355 0.8502 -8.1599 21 1 8.4464 -0.1023 -7.9073 22 1 6.0366 0.1638 -7.9427 23 1 7.4097 1.3375 -9.5607 24 6 10.1433 4.1759 -5.2195 25 6 9.0374 4.8890 -6.0018 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0108 31 1 1.3339 4.5114 0.0007 32 1 3.7921 4.6381 0.0001 33 1 5.8756 3.5066 0.5140 34 1 5.9714 1.7293 0.5146 35 1 5.7555 1.7168 -1.9557 36 1 5.6598 3.4942 -1.9562 37 1 8.0057 2.9466 -0.6302 38 1 6.8369 3.5856 -4.2247 39 1 8.0595 4.6634 -3.5092 40 1 5.8270 3.2014 -7.6241 41 1 10.4765 4.6340 -4.2883 42 1 10.9144 3.6621 -5.7935 43 1 9.0815 4.8439 -7.0900 44 1 8.6428 5.8158 -5.5853 45 1 4.0206 0.3799 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451063383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:48 Heat of formation + Delta-G solvation = -68.317821 kcal Electronic energy + Delta-G solvation = -27088.382292 eV Core-core repulsion = 23198.970143 eV Total energy + Delta-G solvation = -3889.412149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32467 -38.03532 -36.73799 -36.25123 -35.62332 -35.01028 -32.25628 -32.02270 -30.65927 -28.15748 -28.06535 -27.33644 -25.43517 -23.43473 -22.65934 -21.20042 -21.06062 -19.69443 -18.68987 -17.88765 -16.80584 -16.50416 -16.44662 -16.15979 -15.98853 -15.82611 -15.16867 -14.75482 -14.63549 -14.34983 -14.08646 -13.73981 -13.67232 -13.36559 -13.10382 -12.98101 -12.32723 -12.10287 -11.93377 -11.86402 -11.78691 -11.54679 -11.35158 -11.23771 -11.11688 -11.08387 -10.99550 -10.93024 -10.83626 -10.54773 -10.43621 -10.09699 -9.69753 -9.20778 -8.95725 -8.93393 -8.55400 -8.35817 -8.07262 -6.12455 -4.22654 1.04699 1.19433 1.30278 3.05423 3.30141 3.38107 3.45478 3.46671 3.60948 4.39263 4.54998 4.58444 4.61998 4.82090 4.87903 4.90145 4.95157 4.99559 5.10543 5.16967 5.17728 5.20646 5.24261 5.32183 5.45396 5.53339 5.59230 5.83596 5.87550 5.94061 6.00337 6.11543 6.20981 6.26787 6.29789 6.39042 6.46406 6.59352 6.62991 6.73622 6.99922 7.21044 7.24186 7.31492 7.40461 7.82513 8.22268 8.83206 9.48562 10.95271 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.003152 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.271815 B = 8879.887860 C =10033.474794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.151 4.151 7 C -0.041 4.041 8 C -0.087 4.087 9 C 0.121 3.879 10 N -1.134 6.134 11 S 2.607 3.393 12 O -0.975 6.975 13 O -0.950 6.950 14 C -0.554 4.554 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.069 0.931 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.283 1.283 24 C -0.208 4.208 25 C -0.142 4.142 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.409 0.591 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 1.770 16.198 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.097 4.097 6 C -0.169 4.169 7 C -0.042 4.042 8 C -0.125 4.125 9 C -0.006 4.006 10 N -0.891 5.891 11 S 2.704 3.296 12 O -0.965 6.965 13 O -0.939 6.939 14 C -0.687 4.687 15 C 0.041 3.959 16 C -0.552 4.552 17 H 0.087 0.913 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.209 1.209 24 C -0.245 4.245 25 C -0.181 4.181 26 C -0.164 4.164 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.241 0.759 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.030 0.846 15.792 19.281 hybrid contribution -0.895 0.256 -0.463 1.040 sum -11.925 1.103 15.329 19.453 Atomic orbital electron populations 1.23045 0.78479 1.03914 1.01277 1.86087 1.21310 1.26983 1.88707 1.19007 0.92306 0.84154 0.96328 1.21221 0.99930 0.92492 1.09473 1.20913 0.94597 0.96938 0.97294 1.21001 0.93742 0.98115 1.04045 1.19546 0.95226 0.92291 0.97100 1.20802 0.90627 1.03976 0.97124 1.21219 0.79524 1.02902 0.96933 1.55991 1.15272 1.88882 1.28959 1.05123 0.73518 0.77222 0.73696 1.93503 1.33336 1.87902 1.81796 1.93535 1.80242 1.39054 1.81114 1.29976 1.12149 1.14673 1.11928 1.18280 0.90400 0.95552 0.91671 1.20575 1.15666 0.98396 1.20607 0.91279 1.24951 0.95149 0.95792 0.96410 1.69990 1.11174 1.31809 1.38036 0.86521 0.78616 0.82568 0.80418 1.19195 1.20633 1.20860 1.23197 0.93406 1.06345 1.01597 1.22551 1.01706 0.95222 0.98600 1.20374 0.91380 0.98475 1.06133 0.92777 0.92585 0.88279 0.85657 0.85765 0.85631 0.89949 0.89842 0.89847 0.91552 0.75887 0.84869 0.88257 0.92805 0.90677 0.89531 0.89609 0.91552 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.60 10.50 -19.45 -0.20 -3.80 16 3 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 5 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 6 C -0.15 -1.53 9.70 -39.56 -0.38 -1.91 16 7 C -0.04 -0.45 5.13 -104.65 -0.54 -0.99 16 8 C -0.09 -0.89 5.48 -27.89 -0.15 -1.05 16 9 C 0.12 1.61 6.11 -4.05 -0.02 1.58 16 10 N -1.13 -16.49 5.89 -10.62 -0.06 -16.56 16 11 S 2.61 52.54 5.19 -107.50 -0.56 51.98 16 12 O -0.97 -21.35 18.08 -57.54 -1.04 -22.39 16 13 O -0.95 -22.78 17.16 -57.54 -0.99 -23.76 16 14 C -0.55 -11.59 5.93 37.16 0.22 -11.37 16 15 C 0.04 1.06 1.32 -155.67 -0.21 0.85 16 16 C -0.52 -14.18 8.18 -34.44 -0.28 -14.46 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C 0.08 2.25 5.38 -17.82 -0.10 2.15 16 19 N -0.87 -24.12 12.98 55.43 0.72 -23.40 16 20 Si 0.89 21.58 29.55 -169.99 -5.02 16.55 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.21 -4.59 9.96 -26.69 -0.27 -4.85 16 25 C -0.14 -3.23 9.49 -26.69 -0.25 -3.49 16 26 C -0.14 -1.74 9.64 -39.44 -0.38 -2.12 16 27 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 28 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 31 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.08 1.26 7.69 -51.92 -0.40 0.86 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.41 4.81 8.62 -34.48 -0.30 4.52 16 38 H 0.13 2.90 8.14 -51.92 -0.42 2.47 16 39 H 0.10 1.74 8.09 -51.92 -0.42 1.32 16 40 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.27 392.08 -10.49 -44.76 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.86 Total: 7.59 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: -2.39 Total: -36.88 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.66 Total: -39.95 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.23 Total: -49.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.56 Total: 51.98 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.27 -10.49 -44.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451063383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.562 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds