Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35906 * 117.00295 * 2 1 4 4 C 1.38754 * 120.04896 * 359.72433 * 3 2 1 5 5 C 1.38126 * 119.93983 * 179.70563 * 4 3 2 6 6 C 1.38285 * 120.05627 * 0.58563 * 5 4 3 7 7 C 1.38250 * 120.11265 * 359.68789 * 6 5 4 8 8 C 1.50693 * 119.97474 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47634 * 269.98059 * 8 7 6 10 10 N 1.46494 * 109.47684 * 180.02562 * 9 8 7 11 11 S 1.65599 * 120.00319 * 165.00007 * 10 9 8 12 12 O 1.42103 * 104.27768 * 181.07059 * 11 10 9 13 13 O 1.42100 * 104.27404 * 308.92486 * 11 10 9 14 14 C 1.81397 * 104.45143 * 64.99923 * 11 10 9 15 15 C 1.52999 * 109.47240 * 173.81113 * 14 11 10 16 16 C 1.50699 * 115.54887 * 65.19289 * 15 14 11 17 17 H 1.07999 * 120.00050 * 264.78581 * 16 15 14 18 18 C 1.37876 * 120.00117 * 84.78318 * 16 15 14 19 19 N 1.31524 * 119.99936 * 352.23632 * 18 16 15 20 20 Si 1.86796 * 120.00277 * 172.23050 * 18 16 15 21 21 H 1.48498 * 109.47119 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47085 * 119.99990 * 20 18 16 23 23 H 1.48497 * 109.47472 * 240.00263 * 20 18 16 24 24 C 1.52996 * 117.49865 * 279.52501 * 15 14 11 25 25 C 1.52996 * 117.49765 * 210.86047 * 15 14 11 26 26 C 1.38166 * 120.05069 * 0.02562 * 7 6 5 27 27 H 1.08994 * 109.47340 * 300.00150 * 1 2 3 28 28 H 1.09005 * 109.46912 * 60.00630 * 1 2 3 29 29 H 1.08997 * 109.47175 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.03343 * 359.96883 * 4 3 2 31 31 H 1.08004 * 119.97228 * 180.29692 * 5 4 3 32 32 H 1.07995 * 119.94490 * 179.70642 * 6 5 4 33 33 H 1.08999 * 109.46906 * 29.98273 * 8 7 6 34 34 H 1.09000 * 109.47206 * 149.97539 * 8 7 6 35 35 H 1.09008 * 109.46938 * 300.00229 * 9 8 7 36 36 H 1.09000 * 109.47249 * 59.99506 * 9 8 7 37 37 H 0.97006 * 119.99196 * 344.99607 * 10 9 8 38 38 H 1.09006 * 109.46788 * 293.81386 * 14 11 10 39 39 H 1.09003 * 109.47176 * 53.81175 * 14 11 10 40 40 H 0.97002 * 119.99990 * 185.02299 * 19 18 16 41 41 H 1.08996 * 117.50022 * 359.97438 * 24 15 14 42 42 H 1.08997 * 117.49944 * 145.02260 * 24 15 14 43 43 H 1.09002 * 117.49669 * 214.97554 * 25 15 14 44 44 H 1.08996 * 117.50204 * 359.97438 * 25 15 14 45 45 H 1.08000 * 120.02804 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0058 5 6 1.9208 3.6048 0.0004 6 6 3.3019 3.6758 0.0001 7 6 4.0560 2.5171 0.0001 8 6 5.5608 2.5982 0.0003 9 6 6.0704 2.6253 -1.4420 10 7 7.5332 2.7035 -1.4418 11 16 8.3802 2.3769 -2.8268 12 8 9.7418 2.5246 -2.4481 13 8 7.8724 1.1226 -3.2605 14 6 7.8929 3.6928 -3.9763 15 6 8.7300 3.5907 -5.2529 16 6 8.5109 2.3477 -6.0762 17 1 9.1627 1.4956 -5.9516 18 6 7.4782 2.2981 -6.9884 19 7 6.5937 3.2704 -7.0338 20 14 7.3355 0.8502 -8.1599 21 1 8.4464 -0.1023 -7.9073 22 1 6.0366 0.1638 -7.9427 23 1 7.4097 1.3375 -9.5607 24 6 10.1433 4.1759 -5.2195 25 6 9.0374 4.8890 -6.0018 26 6 3.4311 1.2849 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2128 2.3203 -0.0108 31 1 1.3339 4.5114 0.0007 32 1 3.7921 4.6381 0.0001 33 1 5.8756 3.5066 0.5140 34 1 5.9714 1.7293 0.5146 35 1 5.7555 1.7168 -1.9557 36 1 5.6598 3.4942 -1.9562 37 1 8.0057 2.9466 -0.6302 38 1 6.8369 3.5856 -4.2247 39 1 8.0595 4.6634 -3.5092 40 1 5.8270 3.2014 -7.6241 41 1 10.4765 4.6340 -4.2883 42 1 10.9144 3.6621 -5.7935 43 1 9.0815 4.8439 -7.0900 44 1 8.6428 5.8158 -5.5853 45 1 4.0206 0.3799 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451063383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -91.271899 kcal Electronic energy + Delta-G solvation = -27089.377655 eV Core-core repulsion = 23198.970143 eV Total energy + Delta-G solvation = -3890.407512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08210 -38.83034 -38.55104 -37.93072 -36.85258 -36.59861 -34.07969 -33.17123 -31.41918 -29.83423 -28.95505 -28.00031 -27.48017 -24.40538 -23.43654 -22.97622 -21.91140 -21.45083 -20.23653 -18.83058 -18.33803 -18.18493 -17.32272 -17.21041 -16.92378 -16.76591 -16.68362 -16.61943 -15.92594 -15.63635 -15.49855 -14.94955 -14.80597 -14.50479 -14.22573 -13.81958 -13.74957 -13.63727 -13.27924 -13.12453 -12.91090 -12.89519 -12.85768 -12.79455 -12.72158 -12.45239 -12.42962 -12.26209 -12.19242 -11.90358 -11.86413 -11.67625 -11.51287 -10.86687 -10.55023 -10.47822 -9.87670 -9.75302 -9.13636 -8.19574 -6.33543 -0.49508 0.35257 0.51436 1.35966 1.39699 1.50619 2.05418 2.39290 2.39639 2.79629 2.96347 3.07985 3.39989 3.48417 3.78933 3.89820 3.99210 4.07388 4.10177 4.22169 4.30936 4.33791 4.38252 4.44969 4.52867 4.54113 4.60110 4.61227 4.63793 4.71325 4.74357 4.86495 4.99689 5.00789 5.10882 5.20833 5.23173 5.36584 5.48924 5.51784 5.60576 5.67905 5.72404 5.86332 6.22365 6.24131 6.47671 6.72685 7.38675 8.87525 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.003152 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.271815 B = 8879.887860 C =10033.474794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.216 4.216 5 C -0.082 4.082 6 C -0.156 4.156 7 C -0.050 4.050 8 C -0.078 4.078 9 C 0.114 3.886 10 N -1.113 6.113 11 S 2.623 3.377 12 O -0.994 6.994 13 O -0.996 6.996 14 C -0.551 4.551 15 C 0.010 3.990 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.044 3.956 19 N -0.891 5.891 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.196 4.196 25 C -0.138 4.138 26 C -0.171 4.171 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.425 0.575 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.265 0.735 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 3.571 17.498 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.063 3.937 4 C -0.234 4.234 5 C -0.100 4.100 6 C -0.174 4.174 7 C -0.051 4.051 8 C -0.117 4.117 9 C -0.012 4.012 10 N -0.875 5.875 11 S 2.720 3.280 12 O -0.984 6.984 13 O -0.986 6.986 14 C -0.684 4.684 15 C 0.007 3.993 16 C -0.572 4.572 17 H 0.066 0.934 18 C -0.159 4.159 19 N -0.527 5.527 20 Si 0.759 3.241 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.233 4.233 25 C -0.177 4.177 26 C -0.190 4.190 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.262 0.738 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.975 2.651 17.095 21.040 hybrid contribution -0.648 -0.309 -0.821 1.091 sum -12.623 2.342 16.274 20.728 Atomic orbital electron populations 1.23316 0.76521 1.05401 1.02250 1.86049 1.23491 1.27286 1.88828 1.19238 0.92507 0.84952 0.96964 1.21522 1.01067 0.92132 1.08686 1.21305 0.94796 0.97751 0.96135 1.21322 0.94194 0.98559 1.03338 1.19644 0.95558 0.92341 0.97524 1.20762 0.90236 1.05593 0.95071 1.21386 0.78340 1.02314 0.99146 1.55398 1.15789 1.88454 1.27819 1.04325 0.73059 0.76367 0.74205 1.93465 1.34785 1.87982 1.82211 1.93481 1.80959 1.41708 1.82454 1.29860 1.10706 1.16947 1.10915 1.18407 0.92655 0.95016 0.93176 1.20746 1.15478 0.99251 1.21707 0.93444 1.25494 0.95128 0.97805 0.97515 1.70024 1.11414 1.32673 1.38600 0.85875 0.78300 0.80382 0.79526 1.19782 1.20333 1.19549 1.23250 0.92387 1.05345 1.02361 1.22512 1.02069 0.95564 0.97561 1.20534 0.92031 0.98822 1.07611 0.91300 0.92001 0.86697 0.83558 0.83077 0.83501 0.87096 0.89590 0.92382 0.90274 0.73829 0.85965 0.84491 0.92572 0.88120 0.90034 0.91645 0.89229 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.81 10.50 -92.49 -0.97 -8.78 16 3 C 0.11 2.53 6.69 22.50 0.15 2.68 16 4 C -0.22 -3.99 9.04 22.37 0.20 -3.79 16 5 C -0.08 -1.37 10.04 22.25 0.22 -1.15 16 6 C -0.16 -2.79 9.70 22.28 0.22 -2.57 16 7 C -0.05 -1.05 5.13 -19.88 -0.10 -1.15 16 8 C -0.08 -1.47 5.48 29.84 0.16 -1.31 16 9 C 0.11 2.91 6.11 86.38 0.53 3.44 16 10 N -1.11 -30.60 5.89 -187.50 -1.10 -31.70 16 11 S 2.62 104.36 5.19 -56.49 -0.29 104.07 16 12 O -0.99 -42.53 18.08 -127.65 -2.31 -44.84 16 13 O -1.00 -48.91 17.16 -127.65 -2.19 -51.10 16 14 C -0.55 -22.36 5.93 71.98 0.43 -21.94 16 15 C 0.01 0.46 1.32 -52.93 -0.07 0.39 16 16 C -0.53 -29.88 8.18 25.60 0.21 -29.67 16 17 H 0.05 2.77 7.83 -2.91 -0.02 2.75 16 18 C 0.04 2.41 5.38 84.65 0.46 2.86 16 19 N -0.89 -49.19 12.98 21.45 0.28 -48.91 16 20 Si 0.93 44.58 29.55 68.60 2.03 46.61 16 21 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 C -0.20 -8.38 9.96 30.62 0.30 -8.08 16 25 C -0.14 -6.13 9.49 30.62 0.29 -5.84 16 26 C -0.17 -4.18 9.64 22.36 0.22 -3.97 16 27 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 28 H 0.06 0.72 7.65 -2.38 -0.02 0.71 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.15 1.95 6.30 -2.91 -0.02 1.93 16 31 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 35 H 0.06 1.79 7.69 -2.38 -0.02 1.77 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.43 8.96 8.62 -96.74 -0.83 8.13 16 38 H 0.12 5.25 8.14 -2.39 -0.02 5.23 16 39 H 0.14 4.38 8.09 -2.39 -0.02 4.36 16 40 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 43 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.72 392.08 -0.08 -74.80 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.16 Total: 28.56 kcal Atomic # 6 Polarization: -73.03 SS G_CDS: 4.33 Total: -68.71 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -0.83 Total: -80.61 kcal Atomic # 8 Polarization: -99.25 SS G_CDS: -5.47 Total: -104.72 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 104.36 SS G_CDS: -0.29 Total: 104.07 kcal Total: -74.72 -0.08 -74.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451063383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.476 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds