Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46940 * 2 1 4 4 C 1.53003 * 109.46972 * 239.99857 * 2 1 3 5 5 N 1.46505 * 109.46935 * 179.97438 * 4 2 1 6 6 S 1.65599 * 119.99941 * 164.99913 * 5 4 2 7 7 O 1.42094 * 104.27549 * 181.07152 * 6 5 4 8 8 O 1.42098 * 104.27876 * 308.92933 * 6 5 4 9 9 C 1.81407 * 104.44885 * 65.00033 * 6 5 4 10 10 C 1.52999 * 109.46803 * 173.27105 * 9 6 5 11 11 C 1.50700 * 115.55020 * 58.28653 * 10 9 6 12 12 H 1.07999 * 119.99525 * 264.80629 * 11 10 9 13 13 C 1.37874 * 120.00157 * 84.80880 * 11 10 9 14 14 N 1.31519 * 119.99720 * 352.79904 * 13 11 10 15 15 Si 1.86792 * 120.00074 * 172.80293 * 13 11 10 16 16 H 1.48501 * 109.47475 * 59.99414 * 15 13 11 17 17 H 1.48502 * 109.47410 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47112 * 299.99305 * 15 13 11 19 19 C 1.53003 * 117.49701 * 272.60881 * 10 9 6 20 20 C 1.53003 * 117.49361 * 203.95458 * 10 9 6 21 21 O 1.42896 * 109.47087 * 119.99961 * 2 1 3 22 22 C 1.35906 * 116.99759 * 275.15065 * 21 2 1 23 23 C 1.38734 * 120.05408 * 5.03383 * 22 21 2 24 24 C 1.38150 * 119.94069 * 179.74185 * 23 22 21 25 25 C 1.38262 * 120.05256 * 0.50633 * 24 23 22 26 26 C 1.38270 * 120.11845 * 359.76932 * 25 24 23 27 27 C 1.38151 * 120.05110 * 359.97369 * 26 25 24 28 28 H 1.09001 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47216 * 300.00416 * 1 2 3 30 30 H 1.09000 * 109.46896 * 60.00187 * 1 2 3 31 31 H 1.09000 * 109.47346 * 60.00232 * 4 2 1 32 32 H 1.08993 * 109.47269 * 299.99566 * 4 2 1 33 33 H 0.97004 * 119.99781 * 345.00140 * 5 4 2 34 34 H 1.08995 * 109.46919 * 293.27287 * 9 6 5 35 35 H 1.09004 * 109.46857 * 53.26900 * 9 6 5 36 36 H 0.97006 * 119.99770 * 185.02872 * 14 13 11 37 37 H 1.08999 * 117.49989 * 0.02562 * 19 10 9 38 38 H 1.09003 * 117.49335 * 145.02113 * 19 10 9 39 39 H 1.09004 * 117.49687 * 214.98179 * 20 10 9 40 40 H 1.08997 * 117.50072 * 359.97438 * 20 10 9 41 41 H 1.07994 * 120.03143 * 359.97438 * 23 22 21 42 42 H 1.07993 * 119.97070 * 180.23089 * 24 23 22 43 43 H 1.08004 * 119.94396 * 179.74300 * 25 24 23 44 44 H 1.07996 * 119.97518 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.02627 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5050 -0.7208 -1.2496 6 16 4.3332 -1.7347 -2.2636 7 8 5.7007 -1.4802 -1.9735 8 8 3.7596 -3.0129 -2.0263 9 6 3.9160 -1.1491 -3.9291 10 6 4.7561 -1.9047 -4.9607 11 6 4.6027 -3.4039 -4.9514 12 1 5.2991 -4.0144 -4.3958 13 6 3.5735 -3.9959 -5.6523 14 7 2.6447 -3.2511 -6.2110 15 14 3.4984 -5.8558 -5.8081 16 1 3.4073 -6.4627 -4.4559 17 1 2.3039 -6.2382 -6.6033 18 1 4.7241 -6.3454 -6.4889 19 6 6.1361 -1.3377 -5.3000 20 6 4.9929 -1.2271 -6.3119 21 8 2.0063 -0.6736 1.1667 22 6 2.1095 0.0619 2.3049 23 6 1.6621 1.3750 2.3266 24 6 1.7632 2.1188 3.4863 25 6 2.3193 1.5591 4.6217 26 6 2.7712 0.2524 4.6010 27 6 2.6675 -0.4973 3.4453 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6767 -0.2075 -2.1393 32 1 1.6767 -1.7489 -1.2492 33 1 3.9899 -0.1265 -0.6557 34 1 2.8580 -1.3261 -4.1220 35 1 4.1249 -0.0817 -4.0018 36 1 1.8820 -3.6686 -6.6412 37 1 6.4456 -0.4266 -4.7879 38 1 6.9330 -2.0491 -5.5168 39 1 5.0381 -1.8657 -7.1941 40 1 4.5499 -0.2432 -6.4660 41 1 1.2317 1.8140 1.4387 42 1 1.4116 3.1398 3.5048 43 1 2.4012 2.1435 5.5262 44 1 3.2055 -0.1823 5.4891 45 1 3.0210 -1.5177 3.4296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451196174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -85.448344 kcal Electronic energy + Delta-G solvation = -27552.050792 eV Core-core repulsion = 23661.895808 eV Total energy + Delta-G solvation = -3890.154984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25172 -38.74056 -38.54750 -37.92775 -36.78313 -36.20144 -34.08493 -32.84291 -31.67634 -30.53779 -29.85795 -27.50090 -26.77091 -24.29857 -23.34896 -22.97083 -21.93898 -21.45583 -20.22019 -19.36161 -18.44828 -18.36999 -17.64524 -16.95008 -16.76893 -16.71228 -16.51245 -16.18889 -15.84518 -15.60621 -15.35910 -14.92128 -14.65250 -14.43230 -14.23397 -13.76877 -13.74444 -13.69312 -13.59625 -13.18102 -13.10898 -12.90925 -12.89757 -12.85938 -12.78785 -12.42984 -12.42371 -12.18839 -12.06231 -11.89847 -11.83435 -11.59725 -11.50307 -10.88507 -10.56731 -10.49963 -9.92032 -9.87087 -9.12487 -8.20561 -6.35260 -0.50564 0.41870 0.52447 1.37969 1.40535 1.47569 2.02880 2.23298 2.39849 2.87898 2.97240 3.07508 3.38627 3.45825 3.62359 3.85641 3.93978 3.96763 4.05345 4.08869 4.30349 4.32369 4.40590 4.44562 4.52322 4.54843 4.57987 4.60754 4.69592 4.83618 4.85292 4.90503 4.91939 4.99127 5.11595 5.22214 5.26061 5.41576 5.45283 5.51383 5.60760 5.63167 5.70873 5.91354 6.09851 6.22129 6.52618 6.70462 7.38008 8.86197 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.002891 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.170060 B = 9682.892620 C = 9962.950509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.077 3.923 3 H 0.103 0.897 4 C 0.109 3.891 5 N -1.115 6.115 6 S 2.623 3.377 7 O -1.000 7.000 8 O -0.995 6.995 9 C -0.549 4.549 10 C 0.010 3.990 11 C -0.543 4.543 12 H 0.045 0.955 13 C 0.049 3.951 14 N -0.887 5.887 15 Si 0.930 3.070 16 H -0.280 1.280 17 H -0.271 1.271 18 H -0.268 1.268 19 C -0.197 4.197 20 C -0.135 4.135 21 O -0.328 6.328 22 C 0.111 3.889 23 C -0.217 4.217 24 C -0.083 4.083 25 C -0.166 4.166 26 C -0.085 4.085 27 C -0.182 4.182 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.420 0.580 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.267 0.733 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 15.302 15.963 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.020 3.980 3 H 0.121 0.879 4 C -0.017 4.017 5 N -0.875 5.875 6 S 2.721 3.279 7 O -0.991 6.991 8 O -0.984 6.984 9 C -0.682 4.682 10 C 0.008 3.992 11 C -0.580 4.580 12 H 0.063 0.937 13 C -0.155 4.155 14 N -0.523 5.523 15 Si 0.755 3.245 16 H -0.206 1.206 17 H -0.195 1.195 18 H -0.193 1.193 19 C -0.234 4.234 20 C -0.174 4.174 21 O -0.242 6.242 22 C 0.066 3.934 23 C -0.236 4.236 24 C -0.101 4.101 25 C -0.184 4.184 26 C -0.103 4.103 27 C -0.201 4.201 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.255 0.745 34 H 0.147 0.853 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.197 14.229 15.939 22.247 hybrid contribution -0.227 -0.747 -0.495 0.924 sum -6.424 13.483 15.444 21.484 Atomic orbital electron populations 1.22356 0.92440 1.03903 1.04809 1.22825 0.95924 0.97123 0.82159 0.87937 1.21744 0.78825 1.02694 0.98443 1.55373 1.15377 1.60331 1.56422 1.04341 0.72868 0.73748 0.76952 1.93450 1.34998 1.85922 1.84712 1.93479 1.78999 1.41203 1.84750 1.29829 1.10716 1.09412 1.18243 1.18374 0.93415 0.92521 0.94872 1.20680 1.14177 0.90580 1.32545 0.93705 1.25446 0.94989 1.01422 0.93642 1.69987 1.09901 1.36294 1.36117 0.86044 0.78287 0.81910 0.78235 1.20581 1.19538 1.19287 1.23233 0.92341 1.02476 1.05318 1.22502 1.01410 1.00178 0.93360 1.86200 1.81396 1.39386 1.17263 1.19348 0.96014 0.91319 0.86764 1.21558 1.07036 0.93603 1.01367 1.21338 0.96485 1.00466 0.91822 1.21426 1.01486 0.95665 0.99787 1.21264 0.97499 0.94458 0.97058 1.20721 1.05111 1.01688 0.92549 0.92020 0.90599 0.88026 0.86605 0.91207 0.74541 0.85324 0.84223 0.92415 0.88173 0.90239 0.91643 0.89068 0.83576 0.83222 0.83546 0.83598 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.17 71.98 0.66 -2.09 16 2 C 0.08 1.54 2.31 30.60 0.07 1.61 16 3 H 0.10 1.55 6.30 -2.39 -0.02 1.54 16 4 C 0.11 2.71 5.82 86.38 0.50 3.21 16 5 N -1.11 -33.01 5.75 -187.48 -1.08 -34.09 16 6 S 2.62 108.02 5.05 -56.49 -0.29 107.73 16 7 O -1.00 -45.34 18.08 -127.65 -2.31 -47.65 16 8 O -0.99 -50.36 16.97 -127.65 -2.17 -52.52 16 9 C -0.55 -21.79 5.97 71.98 0.43 -21.36 16 10 C 0.01 0.49 1.41 -52.93 -0.07 0.42 16 11 C -0.54 -30.26 7.79 25.60 0.20 -30.06 16 12 H 0.04 2.62 7.82 -2.91 -0.02 2.60 16 13 C 0.05 2.68 5.38 84.65 0.46 3.13 16 14 N -0.89 -48.23 12.96 21.45 0.28 -47.95 16 15 Si 0.93 44.45 29.55 68.60 2.03 46.48 16 16 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 19 C -0.20 -8.34 9.94 30.62 0.30 -8.03 16 20 C -0.14 -5.93 9.50 30.62 0.29 -5.64 16 21 O -0.33 -8.66 9.66 -92.50 -0.89 -9.55 16 22 C 0.11 2.59 6.60 22.51 0.15 2.73 16 23 C -0.22 -3.84 8.24 22.37 0.18 -3.65 16 24 C -0.08 -1.21 10.04 22.25 0.22 -0.99 16 25 C -0.17 -2.42 10.04 22.28 0.22 -2.19 16 26 C -0.08 -1.48 10.04 22.26 0.22 -1.25 16 27 C -0.18 -4.17 9.99 22.37 0.22 -3.94 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.05 6.93 -2.39 -0.02 1.03 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.08 7.69 -2.39 -0.02 2.06 16 33 H 0.42 10.80 8.62 -96.74 -0.83 9.97 16 34 H 0.13 5.21 8.14 -2.39 -0.02 5.20 16 35 H 0.14 4.29 8.11 -2.39 -0.02 4.27 16 36 H 0.27 13.79 8.32 -92.70 -0.77 13.02 16 37 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 38 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.06 3.10 8.14 -2.38 -0.02 3.09 16 40 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.15 1.95 5.44 -2.91 -0.02 1.94 16 42 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.12 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -75.06 388.19 -0.20 -75.26 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.16 Total: 30.39 kcal Atomic # 6 Polarization: -72.17 SS G_CDS: 4.07 Total: -68.10 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -0.80 Total: -82.04 kcal Atomic # 8 Polarization: -104.36 SS G_CDS: -5.37 Total: -109.72 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 108.02 SS G_CDS: -0.29 Total: 107.73 kcal Total: -75.06 -0.20 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451196174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.186 kcal (2) G-P(sol) polarization free energy of solvation -75.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds