Wall clock time and date at job start Sat Apr 11 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00075 * 2 1 4 4 C 1.53002 * 109.47205 * 174.03581 * 3 2 1 5 5 S 1.81402 * 115.54587 * 334.28497 * 4 3 2 6 6 O 1.42100 * 110.54327 * 288.34767 * 5 4 3 7 7 O 1.42098 * 110.53929 * 151.60006 * 5 4 3 8 8 N 1.65593 * 104.45146 * 39.97367 * 5 4 3 9 9 C 1.46501 * 120.00189 * 82.15927 * 8 5 4 10 10 H 1.09007 * 109.47110 * 6.99428 * 9 8 5 11 11 C 1.53000 * 109.47358 * 126.99858 * 9 8 5 12 12 C 1.50692 * 109.46997 * 294.99967 * 11 9 8 13 13 H 1.08001 * 120.00286 * 359.97438 * 12 11 9 14 14 C 1.37884 * 119.99846 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00040 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00053 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46823 * 90.00245 * 16 14 12 18 18 H 1.48498 * 109.46889 * 210.00208 * 16 14 12 19 19 H 1.48499 * 109.47154 * 330.00346 * 16 14 12 20 20 C 1.50699 * 109.46886 * 247.00082 * 9 8 5 21 21 C 1.38237 * 119.99950 * 110.73736 * 20 9 8 22 22 C 1.38236 * 119.99804 * 179.97438 * 21 20 9 23 23 C 1.38236 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00067 * 0.07488 * 23 22 21 25 25 C 1.38239 * 119.99881 * 290.71003 * 20 9 8 26 26 C 1.52994 * 117.51796 * 119.98669 * 4 3 2 27 27 C 1.52995 * 117.50001 * 188.61661 * 4 3 2 28 28 H 1.08999 * 109.46777 * 186.31691 * 1 2 3 29 29 H 1.09003 * 109.46830 * 306.32005 * 1 2 3 30 30 H 1.09000 * 109.46776 * 66.31656 * 1 2 3 31 31 H 1.09001 * 109.47470 * 54.03440 * 3 2 1 32 32 H 1.09001 * 109.46850 * 294.03459 * 3 2 1 33 33 H 0.97002 * 120.00070 * 262.15412 * 8 5 4 34 34 H 1.08998 * 109.46623 * 55.00336 * 11 9 8 35 35 H 1.09007 * 109.46795 * 174.99760 * 11 9 8 36 36 H 0.97000 * 120.00583 * 179.97438 * 15 14 12 37 37 H 1.07995 * 120.00176 * 359.97127 * 21 20 9 38 38 H 1.08005 * 119.99966 * 179.71817 * 22 21 20 39 39 H 1.08005 * 120.00171 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00146 * 180.02562 * 24 23 22 41 41 H 1.07989 * 119.99972 * 359.97438 * 25 20 9 42 42 H 1.09007 * 117.49533 * 214.97262 * 26 4 3 43 43 H 1.09000 * 117.50141 * 359.97438 * 26 4 3 44 44 H 1.09003 * 117.49929 * 359.97438 * 27 4 3 45 45 H 1.08998 * 117.50020 * 144.99333 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5284 1.1878 0.1499 5 16 4.1183 -0.3112 0.9839 6 8 3.8211 -0.2591 2.3725 7 8 5.4177 -0.6583 0.5254 8 7 3.1444 -1.5179 0.4029 9 6 3.4403 -2.1393 -0.8904 10 1 4.3969 -1.7703 -1.2604 11 6 3.5102 -3.6584 -0.7222 12 6 4.6750 -4.0124 0.1660 13 1 5.3029 -3.2319 0.5699 14 6 4.9391 -5.3327 0.4632 15 7 4.1748 -6.2830 -0.0289 16 14 6.3833 -5.7715 1.5637 17 1 5.9359 -5.8009 2.9794 18 1 6.9080 -7.1074 1.1825 19 1 7.4541 -4.7551 1.4040 20 6 2.3534 -1.7924 -1.8748 21 6 2.6242 -0.9456 -2.9334 22 6 1.6272 -0.6278 -3.8368 23 6 0.3596 -1.1571 -3.6818 24 6 0.0886 -2.0030 -2.6226 25 6 1.0856 -2.3213 -1.7195 26 6 4.3960 1.7593 -0.9732 27 6 4.3182 2.4787 0.3748 28 1 -0.3633 -1.0214 0.1131 29 1 -0.3633 0.6087 0.8280 30 1 -0.3633 0.4128 -0.9411 31 1 1.6068 1.8829 0.8317 32 1 1.7757 1.8076 -0.9386 33 1 2.3779 -1.8133 0.9188 34 1 2.5858 -4.0167 -0.2692 35 1 3.6419 -4.1263 -1.6979 36 1 4.3607 -7.2119 0.1798 37 1 3.6145 -0.5324 -3.0547 38 1 1.8376 0.0373 -4.6613 39 1 -0.4194 -0.9085 -4.3873 40 1 -0.9016 -2.4168 -2.5018 41 1 0.8743 -2.9834 -0.8930 42 1 5.3214 1.2345 -1.2110 43 1 3.8854 2.2189 -1.8195 44 1 3.7564 3.4118 0.4156 45 1 5.1923 2.4273 1.0240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451349944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:00 Heat of formation + Delta-G solvation = -50.032966 kcal Electronic energy + Delta-G solvation = -29842.683819 eV Core-core repulsion = 25954.064562 eV Total energy + Delta-G solvation = -3888.619258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.12968 -38.40777 -36.91493 -36.39669 -35.55855 -35.26715 -32.45738 -30.54864 -30.42732 -28.44118 -28.21864 -25.56157 -24.60215 -22.84221 -22.43842 -22.03279 -21.67396 -19.95839 -18.67544 -17.37854 -17.01170 -16.75373 -15.94074 -15.92844 -15.80963 -15.32335 -15.16250 -14.64082 -14.49220 -14.32760 -14.06651 -13.63547 -13.13631 -12.96548 -12.84419 -12.81425 -12.22466 -12.19383 -11.93624 -11.88646 -11.56730 -11.52988 -11.49103 -11.18849 -11.13185 -10.98045 -10.81831 -10.73431 -10.58951 -10.51139 -10.26308 -10.14076 -9.67382 -9.63174 -9.02010 -8.48326 -8.37943 -8.26022 -8.17420 -5.90213 -3.89793 0.79682 1.79749 1.84022 2.94804 3.42802 3.45840 3.48316 3.56662 3.70990 4.20003 4.29666 4.41203 4.58757 4.62805 4.71564 5.05122 5.17194 5.24953 5.26286 5.28159 5.31105 5.37292 5.39529 5.43978 5.46812 5.49045 5.57229 5.61725 5.77976 5.80121 5.88121 5.94908 6.02747 6.36724 6.42620 6.61658 6.78097 6.84756 6.89712 7.07971 7.21278 7.44261 7.63903 7.79204 7.96809 8.11032 8.50665 9.17937 9.74109 11.20938 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.006079 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.778163 B = 4604.680354 C = 6186.683360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.366 6.366 3 C 0.124 3.876 4 C -0.658 4.658 5 S 2.650 3.350 6 O -0.965 6.965 7 O -0.946 6.946 8 N -1.054 6.054 9 C 0.194 3.806 10 H 0.089 0.911 11 C 0.026 3.974 12 C -0.511 4.511 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.884 3.116 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.051 4.051 21 C -0.116 4.116 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.087 4.087 26 C -0.118 4.118 27 C -0.127 4.127 28 H 0.090 0.910 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.415 0.585 34 H 0.025 0.975 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 18.037 -4.979 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.284 6.284 3 C 0.046 3.954 4 C -0.743 4.743 5 S 2.736 3.264 6 O -0.955 6.955 7 O -0.936 6.936 8 N -0.812 5.812 9 C 0.087 3.913 10 H 0.107 0.893 11 C -0.013 4.013 12 C -0.550 4.550 13 H 0.083 0.917 14 C -0.143 4.143 15 N -0.539 5.539 16 Si 0.712 3.288 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.195 1.195 20 C -0.053 4.053 21 C -0.135 4.135 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.105 4.105 26 C -0.156 4.156 27 C -0.166 4.166 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.585 17.674 -4.459 19.743 hybrid contribution -0.423 0.144 0.264 0.519 sum -8.008 17.818 -4.195 19.980 Atomic orbital electron populations 1.22761 0.81049 1.03035 0.99481 1.88189 1.19727 1.25307 1.95227 1.21417 0.87108 0.86303 1.00587 1.32496 1.02936 1.19924 1.18932 1.03786 0.74374 0.74341 0.73912 1.93542 1.85567 1.86491 1.29940 1.93609 1.36926 1.80249 1.82854 1.54882 1.45719 1.49576 1.30982 1.19997 0.93763 0.97988 0.79590 0.89348 1.19409 0.97883 0.86348 0.97656 1.21307 1.12357 0.92195 1.29107 0.91692 1.24952 0.96476 0.96644 0.96241 1.69957 1.38827 0.99832 1.45235 0.86707 0.83419 0.77647 0.81065 1.20699 1.21374 1.19550 1.20426 0.95587 0.94183 0.95095 1.21009 0.98752 0.98441 0.95316 1.20930 0.93602 1.00836 0.99174 1.20916 0.96625 0.99374 0.98496 1.21030 0.98905 0.98924 0.95672 1.20990 0.92536 0.98364 0.98646 1.22976 1.00087 1.00832 0.91665 1.22805 1.00161 0.93115 1.00471 0.89184 0.94556 0.94114 0.92639 0.92510 0.75010 0.95677 0.95395 0.93214 0.86898 0.87294 0.87416 0.87098 0.86086 0.86389 0.87302 0.87210 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.63 101.05 0.97 1.31 16 2 O -0.37 -4.56 4.53 -35.23 -0.16 -4.72 16 3 C 0.12 1.37 6.16 37.16 0.23 1.60 16 4 C -0.66 -8.23 2.80 -90.62 -0.25 -8.48 16 5 S 2.65 47.39 5.61 -107.50 -0.60 46.79 16 6 O -0.97 -19.89 18.10 -57.54 -1.04 -20.93 16 7 O -0.95 -19.86 15.50 -57.54 -0.89 -20.75 16 8 N -1.05 -19.19 2.86 -5.88 -0.02 -19.21 16 9 C 0.19 3.75 2.46 -69.08 -0.17 3.58 16 10 H 0.09 1.78 6.77 -51.92 -0.35 1.43 16 11 C 0.03 0.63 4.26 -27.89 -0.12 0.51 16 12 C -0.51 -14.43 8.84 -34.44 -0.30 -14.74 16 13 H 0.06 1.87 7.14 -52.49 -0.37 1.50 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 16 Si 0.88 22.67 29.54 -169.99 -5.02 17.65 16 17 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.05 -0.82 3.50 -104.62 -0.37 -1.19 16 21 C -0.12 -1.66 9.67 -39.58 -0.38 -2.04 16 22 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 23 C -0.14 -1.64 10.05 -39.58 -0.40 -2.04 16 24 C -0.13 -1.63 9.71 -39.58 -0.38 -2.02 16 25 C -0.09 -1.31 6.73 -39.58 -0.27 -1.58 16 26 C -0.12 -1.22 9.81 -26.74 -0.26 -1.48 16 27 C -0.13 -1.25 10.02 -26.74 -0.27 -1.52 16 28 H 0.09 0.90 7.50 -51.93 -0.39 0.51 16 29 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 33 H 0.41 7.25 8.18 -34.47 -0.28 6.97 16 34 H 0.03 0.63 7.14 -51.93 -0.37 0.26 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.11 1.49 7.97 -52.49 -0.42 1.07 16 38 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.11 1.08 8.06 -52.48 -0.42 0.65 16 40 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.12 1.92 7.12 -52.49 -0.37 1.54 16 42 H 0.12 1.30 7.68 -51.92 -0.40 0.91 16 43 H 0.11 0.91 8.03 -51.93 -0.42 0.49 16 44 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -34.43 376.49 -10.51 -44.94 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.72 Total: 5.18 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -2.47 Total: -28.51 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.72 Total: -45.34 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -2.09 Total: -46.39 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 47.39 SS G_CDS: -0.60 Total: 46.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.43 -10.51 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451349944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.088 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds