Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00075 * 2 1 4 4 C 1.53002 * 109.47205 * 174.03581 * 3 2 1 5 5 S 1.81402 * 115.54587 * 334.28497 * 4 3 2 6 6 O 1.42100 * 110.54327 * 288.34767 * 5 4 3 7 7 O 1.42098 * 110.53929 * 151.60006 * 5 4 3 8 8 N 1.65593 * 104.45146 * 39.97367 * 5 4 3 9 9 C 1.46501 * 120.00189 * 82.15927 * 8 5 4 10 10 H 1.09007 * 109.47110 * 6.99428 * 9 8 5 11 11 C 1.53000 * 109.47358 * 126.99858 * 9 8 5 12 12 C 1.50692 * 109.46997 * 294.99967 * 11 9 8 13 13 H 1.08001 * 120.00286 * 359.97438 * 12 11 9 14 14 C 1.37884 * 119.99846 * 179.97438 * 12 11 9 15 15 N 1.31509 * 120.00040 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00053 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46823 * 90.00245 * 16 14 12 18 18 H 1.48498 * 109.46889 * 210.00208 * 16 14 12 19 19 H 1.48499 * 109.47154 * 330.00346 * 16 14 12 20 20 C 1.50699 * 109.46886 * 247.00082 * 9 8 5 21 21 C 1.38237 * 119.99950 * 110.73736 * 20 9 8 22 22 C 1.38236 * 119.99804 * 179.97438 * 21 20 9 23 23 C 1.38236 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38234 * 120.00067 * 0.07488 * 23 22 21 25 25 C 1.38239 * 119.99881 * 290.71003 * 20 9 8 26 26 C 1.52994 * 117.51796 * 119.98669 * 4 3 2 27 27 C 1.52995 * 117.50001 * 188.61661 * 4 3 2 28 28 H 1.08999 * 109.46777 * 186.31691 * 1 2 3 29 29 H 1.09003 * 109.46830 * 306.32005 * 1 2 3 30 30 H 1.09000 * 109.46776 * 66.31656 * 1 2 3 31 31 H 1.09001 * 109.47470 * 54.03440 * 3 2 1 32 32 H 1.09001 * 109.46850 * 294.03459 * 3 2 1 33 33 H 0.97002 * 120.00070 * 262.15412 * 8 5 4 34 34 H 1.08998 * 109.46623 * 55.00336 * 11 9 8 35 35 H 1.09007 * 109.46795 * 174.99760 * 11 9 8 36 36 H 0.97000 * 120.00583 * 179.97438 * 15 14 12 37 37 H 1.07995 * 120.00176 * 359.97127 * 21 20 9 38 38 H 1.08005 * 119.99966 * 179.71817 * 22 21 20 39 39 H 1.08005 * 120.00171 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00146 * 180.02562 * 24 23 22 41 41 H 1.07989 * 119.99972 * 359.97438 * 25 20 9 42 42 H 1.09007 * 117.49533 * 214.97262 * 26 4 3 43 43 H 1.09000 * 117.50141 * 359.97438 * 26 4 3 44 44 H 1.09003 * 117.49929 * 359.97438 * 27 4 3 45 45 H 1.08998 * 117.50020 * 144.99333 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5284 1.1878 0.1499 5 16 4.1183 -0.3112 0.9839 6 8 3.8211 -0.2591 2.3725 7 8 5.4177 -0.6583 0.5254 8 7 3.1444 -1.5179 0.4029 9 6 3.4403 -2.1393 -0.8904 10 1 4.3969 -1.7703 -1.2604 11 6 3.5102 -3.6584 -0.7222 12 6 4.6750 -4.0124 0.1660 13 1 5.3029 -3.2319 0.5699 14 6 4.9391 -5.3327 0.4632 15 7 4.1748 -6.2830 -0.0289 16 14 6.3833 -5.7715 1.5637 17 1 5.9359 -5.8009 2.9794 18 1 6.9080 -7.1074 1.1825 19 1 7.4541 -4.7551 1.4040 20 6 2.3534 -1.7924 -1.8748 21 6 2.6242 -0.9456 -2.9334 22 6 1.6272 -0.6278 -3.8368 23 6 0.3596 -1.1571 -3.6818 24 6 0.0886 -2.0030 -2.6226 25 6 1.0856 -2.3213 -1.7195 26 6 4.3960 1.7593 -0.9732 27 6 4.3182 2.4787 0.3748 28 1 -0.3633 -1.0214 0.1131 29 1 -0.3633 0.6087 0.8280 30 1 -0.3633 0.4128 -0.9411 31 1 1.6068 1.8829 0.8317 32 1 1.7757 1.8076 -0.9386 33 1 2.3779 -1.8133 0.9188 34 1 2.5858 -4.0167 -0.2692 35 1 3.6419 -4.1263 -1.6979 36 1 4.3607 -7.2119 0.1798 37 1 3.6145 -0.5324 -3.0547 38 1 1.8376 0.0373 -4.6613 39 1 -0.4194 -0.9085 -4.3873 40 1 -0.9016 -2.4168 -2.5018 41 1 0.8743 -2.9834 -0.8930 42 1 5.3214 1.2345 -1.2110 43 1 3.8854 2.2189 -1.8195 44 1 3.7564 3.4118 0.4156 45 1 5.1923 2.4273 1.0240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451349944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -73.081769 kcal Electronic energy + Delta-G solvation = -29843.683291 eV Core-core repulsion = 25954.064562 eV Total energy + Delta-G solvation = -3889.618729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.25040 -39.31238 -38.23812 -37.47639 -37.06643 -36.75869 -34.58739 -31.67298 -31.58949 -30.20013 -29.11251 -26.43196 -26.32747 -23.89532 -23.58903 -23.11995 -22.96560 -21.34469 -20.04206 -18.79426 -18.28455 -18.10335 -17.62174 -17.01811 -16.77431 -16.54412 -16.28187 -16.19396 -15.79511 -15.61708 -15.14538 -14.92527 -14.44421 -14.21328 -14.02487 -13.91590 -13.76464 -13.63930 -13.24056 -13.19783 -13.10517 -12.90800 -12.77972 -12.52988 -12.51847 -12.32799 -12.27294 -12.01596 -12.00905 -11.85276 -11.61816 -11.48063 -11.28534 -11.11158 -10.52701 -10.44375 -9.80860 -9.51256 -9.31531 -8.16091 -6.21416 -0.55427 0.72865 0.79219 1.34661 1.35383 1.48055 1.87916 2.29174 2.42051 2.86537 3.05048 3.17182 3.21077 3.30339 3.64205 3.79655 3.93777 4.12249 4.18551 4.39284 4.40934 4.46631 4.49981 4.53325 4.56012 4.62679 4.65917 4.74766 4.84343 4.86987 4.91539 4.97170 5.03742 5.04695 5.07991 5.35516 5.42035 5.52499 5.74376 5.80792 5.86047 5.87211 6.13541 6.30541 6.31954 6.39661 6.50559 6.93767 7.45141 8.94773 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.006079 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.778163 B = 4604.680354 C = 6186.683360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.122 3.878 4 C -0.651 4.651 5 S 2.641 3.359 6 O -1.005 7.005 7 O -0.993 6.993 8 N -1.060 6.060 9 C 0.211 3.789 10 H 0.074 0.926 11 C 0.034 3.966 12 C -0.525 4.525 13 H 0.051 0.949 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.936 3.064 17 H -0.275 1.275 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.065 4.065 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.124 4.124 25 C -0.099 4.099 26 C -0.110 4.110 27 C -0.113 4.113 28 H 0.082 0.918 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.414 0.586 34 H 0.009 0.991 35 H 0.001 0.999 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 21.088 -6.804 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.308 6.308 3 C 0.045 3.955 4 C -0.744 4.744 5 S 2.736 3.264 6 O -0.996 6.996 7 O -0.983 6.983 8 N -0.816 5.816 9 C 0.103 3.897 10 H 0.092 0.908 11 C -0.005 4.005 12 C -0.563 4.563 13 H 0.070 0.930 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.762 3.238 17 H -0.201 1.201 18 H -0.199 1.199 19 H -0.198 1.198 20 C -0.067 4.067 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.118 4.118 26 C -0.148 4.148 27 C -0.152 4.152 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.028 0.972 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.984 20.653 -6.246 23.373 hybrid contribution -0.019 -0.709 0.783 1.056 sum -9.003 19.945 -5.463 22.554 Atomic orbital electron populations 1.22821 0.80025 1.03024 1.00537 1.88180 1.20925 1.26265 1.95431 1.21590 0.85427 0.86141 1.02365 1.31902 1.04597 1.17218 1.20653 1.03538 0.73504 0.75957 0.73436 1.93480 1.85777 1.87618 1.32728 1.93545 1.39576 1.82032 1.83145 1.54702 1.45238 1.51083 1.30607 1.19501 0.94868 0.94149 0.81135 0.90797 1.19223 0.95655 0.90477 0.95115 1.21642 1.13218 0.92053 1.29393 0.93025 1.25683 0.98885 0.96798 0.97632 1.70047 1.40187 1.00110 1.46370 0.85887 0.80561 0.77762 0.79635 1.20110 1.19889 1.19839 1.20046 0.94821 0.96414 0.95411 1.21104 0.99818 0.98235 0.95019 1.21237 0.93010 1.00519 0.99037 1.21288 0.97289 0.97882 0.98095 1.21217 0.99027 0.98762 0.95191 1.20866 0.93039 0.98764 0.99100 1.23208 0.99064 0.99834 0.92670 1.23171 0.99533 0.92847 0.99627 0.89937 0.93342 0.92997 0.91332 0.90040 0.75126 0.97242 0.98080 0.92971 0.86278 0.84266 0.84303 0.85177 0.88210 0.87672 0.84014 0.83438 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.63 113.37 1.09 1.69 16 2 O -0.39 -9.23 4.53 -148.98 -0.68 -9.90 16 3 C 0.12 2.36 6.16 71.98 0.44 2.80 16 4 C -0.65 -15.12 2.80 -10.80 -0.03 -15.15 16 5 S 2.64 98.16 5.61 -56.49 -0.32 97.84 16 6 O -1.01 -43.40 18.10 -127.65 -2.31 -45.71 16 7 O -0.99 -44.06 15.50 -127.65 -1.98 -46.04 16 8 N -1.06 -40.76 2.86 -172.51 -0.49 -41.25 16 9 C 0.21 8.61 2.46 44.24 0.11 8.72 16 10 H 0.07 3.17 6.77 -2.38 -0.02 3.15 16 11 C 0.03 1.78 4.26 29.85 0.13 1.90 16 12 C -0.52 -31.26 8.84 25.60 0.23 -31.03 16 13 H 0.05 3.16 7.14 -2.91 -0.02 3.14 16 14 C 0.01 0.46 5.46 84.66 0.46 0.93 16 15 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 16 Si 0.94 47.84 29.54 68.60 2.03 49.87 16 17 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 18 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 19 H -0.27 -13.99 7.11 99.48 0.71 -13.28 16 20 C -0.06 -2.11 3.50 -19.86 -0.07 -2.18 16 21 C -0.12 -3.29 9.67 22.27 0.22 -3.07 16 22 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 24 C -0.12 -2.91 9.71 22.27 0.22 -2.70 16 25 C -0.10 -3.00 6.73 22.27 0.15 -2.85 16 26 C -0.11 -1.96 9.81 30.59 0.30 -1.66 16 27 C -0.11 -1.86 10.02 30.59 0.31 -1.55 16 28 H 0.08 1.62 7.50 -2.39 -0.02 1.60 16 29 H 0.05 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 33 H 0.41 15.61 8.18 -96.75 -0.79 14.82 16 34 H 0.01 0.51 7.14 -2.39 -0.02 0.49 16 35 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.12 2.96 7.97 -2.91 -0.02 2.93 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.10 3.37 7.12 -2.92 -0.02 3.35 16 42 H 0.10 2.20 7.68 -2.38 -0.02 2.18 16 43 H 0.14 1.64 8.03 -2.39 -0.02 1.62 16 44 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -79.26 376.49 0.73 -78.53 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.20 Total: 22.48 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 3.99 Total: -48.79 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -0.21 Total: -98.27 kcal Atomic # 8 Polarization: -96.69 SS G_CDS: -4.96 Total: -101.66 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Atomic # 16 Polarization: 98.16 SS G_CDS: -0.32 Total: 97.84 kcal Total: -79.26 0.73 -78.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451349944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.447 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds