Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00091 * 2 1 4 4 H 1.09002 * 109.47207 * 173.53861 * 3 2 1 5 5 C 1.53002 * 109.46823 * 293.53223 * 3 2 1 6 6 O 1.42894 * 109.47250 * 67.45560 * 5 3 2 7 7 C 1.50696 * 109.47489 * 53.53536 * 3 2 1 8 8 C 1.38238 * 119.99460 * 299.99235 * 7 3 2 9 9 C 1.38241 * 119.99741 * 179.78564 * 8 7 3 10 10 C 1.38235 * 119.99985 * 0.44598 * 9 8 7 11 11 C 1.38237 * 120.00043 * 359.80919 * 10 9 8 12 12 C 1.38233 * 120.00319 * 120.26886 * 7 3 2 13 13 S 1.65602 * 119.99964 * 179.97438 * 2 1 3 14 14 O 1.42099 * 104.27901 * 333.92734 * 13 2 1 15 15 O 1.42106 * 104.27872 * 206.07251 * 13 2 1 16 16 C 1.81396 * 104.45124 * 90.00099 * 13 2 1 17 17 C 1.53001 * 109.47486 * 186.10081 * 16 13 2 18 18 C 1.50700 * 115.54712 * 297.54678 * 17 16 13 19 19 H 1.07996 * 120.00005 * 95.32118 * 18 17 16 20 20 C 1.37878 * 119.99728 * 275.04292 * 18 17 16 21 21 N 1.31515 * 119.99895 * 355.58736 * 20 18 17 22 22 Si 1.86798 * 119.99829 * 175.59381 * 20 18 17 23 23 H 1.48507 * 109.47241 * 89.99750 * 22 20 18 24 24 H 1.48500 * 109.47220 * 209.99701 * 22 20 18 25 25 H 1.48499 * 109.47293 * 330.00080 * 22 20 18 26 26 C 1.53001 * 117.49812 * 83.21150 * 17 16 13 27 27 C 1.52995 * 117.49909 * 151.86976 * 17 16 13 28 28 H 1.09000 * 109.47026 * 272.86193 * 1 2 3 29 29 H 1.08999 * 109.47327 * 32.86221 * 1 2 3 30 30 H 1.08999 * 109.47355 * 152.86387 * 1 2 3 31 31 H 1.09009 * 109.47139 * 187.45275 * 5 3 2 32 32 H 1.09001 * 109.46931 * 307.45354 * 5 3 2 33 33 H 0.96702 * 114.00419 * 179.97438 * 6 5 3 34 34 H 1.07997 * 120.00353 * 359.97438 * 8 7 3 35 35 H 1.08004 * 119.99680 * 180.27211 * 9 8 7 36 36 H 1.08000 * 119.99940 * 179.83272 * 10 9 8 37 37 H 1.08000 * 120.00304 * 180.02562 * 11 10 9 38 38 H 1.07997 * 120.00150 * 359.97328 * 12 7 3 39 39 H 1.09003 * 109.47094 * 66.09722 * 16 13 2 40 40 H 1.08998 * 109.47127 * 306.10411 * 16 13 2 41 41 H 0.96999 * 119.99786 * 185.00255 * 21 20 18 42 42 H 1.08997 * 117.50051 * 215.00660 * 26 17 16 43 43 H 1.09006 * 117.49827 * 0.02562 * 26 17 16 44 44 H 1.09005 * 117.50032 * 359.97438 * 27 17 16 45 45 H 1.09004 * 117.49669 * 144.97582 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2635 1.0728 0.1156 5 6 1.9536 1.9983 -1.3226 6 8 0.5868 2.4085 -1.3954 7 6 1.7174 2.1260 1.1426 8 6 0.3903 2.5068 1.2108 9 6 -0.0511 3.2895 2.2613 10 6 0.8366 3.6991 3.2386 11 6 2.1648 3.3227 3.1676 12 6 2.6053 2.5364 2.1194 13 16 2.2929 -1.4342 0.0006 14 8 1.3969 -2.3559 0.6063 15 8 3.5395 -1.1189 0.6058 16 6 2.5193 -1.8270 -1.7557 17 6 3.1446 -3.2168 -1.8911 18 6 4.5181 -3.3728 -1.2908 19 1 4.6287 -3.7630 -0.2899 20 6 5.6336 -3.0226 -2.0215 21 7 5.5058 -2.6349 -3.2717 22 14 7.3266 -3.0991 -1.2357 23 1 7.9128 -4.4462 -1.4531 24 1 8.2048 -2.0719 -1.8512 25 1 7.2081 -2.8403 0.2217 26 6 2.2055 -4.4230 -1.8294 27 6 2.8349 -4.0100 -3.1622 28 1 -0.3633 0.0513 1.0264 29 1 -0.3634 0.8632 -0.5576 30 1 -0.3634 -0.9145 -0.4687 31 1 2.5994 2.8747 -1.3785 32 1 2.1769 1.3288 -2.1533 33 1 0.3600 2.8789 -2.2093 34 1 -0.3024 2.1902 0.4450 35 1 -1.0889 3.5834 2.3169 36 1 0.4923 4.3129 4.0578 37 1 2.8583 3.6424 3.9313 38 1 3.6430 2.2422 2.0639 39 1 3.1767 -1.0867 -2.2118 40 1 1.5524 -1.8130 -2.2587 41 1 6.2946 -2.4584 -3.8078 42 1 2.5810 -5.3295 -1.3547 43 1 1.1420 -4.2265 -1.6928 44 1 2.1853 -3.5419 -3.9018 45 1 3.6247 -4.6445 -3.5645 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451756546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = -56.196852 kcal Electronic energy + Delta-G solvation = -28902.743223 eV Core-core repulsion = 25013.856679 eV Total energy + Delta-G solvation = -3888.886544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.73825 -37.35069 -36.75558 -36.30939 -35.32941 -34.96840 -32.04560 -31.55735 -30.71698 -28.76340 -28.19167 -25.74160 -25.43597 -23.18303 -22.41533 -21.18410 -20.79580 -19.50930 -18.38811 -17.77063 -16.97542 -16.59374 -16.36580 -16.02216 -15.48707 -14.93838 -14.80180 -14.64572 -14.59425 -14.24228 -13.83678 -13.56695 -13.24971 -13.14536 -12.79146 -12.55253 -12.40999 -12.14025 -12.02642 -11.87534 -11.80003 -11.26974 -11.24153 -11.08442 -11.03035 -10.93861 -10.92847 -10.71958 -10.56683 -10.44757 -10.09640 -9.88156 -9.63049 -9.07452 -8.83193 -8.76571 -8.64899 -8.54596 -8.06781 -6.14426 -4.26923 0.97066 1.44941 1.52689 3.28348 3.31894 3.35016 3.46133 3.86907 4.17920 4.36911 4.60705 4.63522 4.82788 4.93988 5.03254 5.09037 5.12775 5.14543 5.22782 5.25790 5.35444 5.50814 5.63296 5.64098 5.68288 5.73995 5.88742 5.90673 6.03644 6.14267 6.15256 6.24685 6.31835 6.38018 6.55053 6.60720 6.61029 6.72717 6.77021 6.86600 6.99482 7.09997 7.21439 7.45011 7.51924 7.78618 8.18980 8.79217 9.45080 10.92023 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.004160 C = 0.003801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.535499 B = 6728.618681 C = 7364.381860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.001 6.001 3 C 0.187 3.813 4 H 0.122 0.878 5 C 0.067 3.933 6 O -0.561 6.561 7 C -0.087 4.087 8 C -0.088 4.088 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.129 4.129 12 C -0.108 4.108 13 S 2.603 3.397 14 O -0.967 6.967 15 O -0.948 6.948 16 C -0.554 4.554 17 C 0.039 3.961 18 C -0.515 4.515 19 H 0.067 0.933 20 C 0.082 3.918 21 N -0.875 5.875 22 Si 0.888 3.112 23 H -0.279 1.279 24 H -0.283 1.283 25 H -0.264 1.264 26 C -0.208 4.208 27 C -0.134 4.134 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.372 0.628 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 13.594 3.302 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.835 5.835 3 C 0.080 3.920 4 H 0.140 0.860 5 C -0.013 4.013 6 O -0.367 6.367 7 C -0.089 4.089 8 C -0.106 4.106 9 C -0.153 4.153 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.127 4.127 13 S 2.702 3.298 14 O -0.957 6.957 15 O -0.938 6.938 16 C -0.687 4.687 17 C 0.036 3.964 18 C -0.552 4.552 19 H 0.086 0.914 20 C -0.123 4.123 21 N -0.510 5.510 22 Si 0.715 3.285 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.246 4.246 27 C -0.173 4.173 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.969 12.976 4.548 16.983 hybrid contribution 0.928 0.449 -0.983 1.424 sum -9.041 13.425 3.565 16.573 Atomic orbital electron populations 1.21777 0.79195 1.03299 1.01826 1.57895 1.15099 1.20390 1.90146 1.19915 0.97441 0.82938 0.91702 0.86041 1.22680 0.83275 0.98005 0.97311 1.86483 1.27142 1.78494 1.44600 1.19886 0.94442 0.98362 0.96188 1.21599 0.95803 0.95646 0.97514 1.21175 0.99385 0.99462 0.95300 1.21127 0.93779 1.00260 0.98860 1.21063 0.95966 0.99257 0.98467 1.21198 0.99932 0.97514 0.94014 1.05371 0.73353 0.72248 0.78824 1.93494 1.65279 1.62047 1.74903 1.93517 1.43428 1.82304 1.74589 1.30048 1.07121 1.09359 1.22160 1.18289 0.93815 0.83634 1.00644 1.20536 0.88371 1.44849 1.01452 0.91439 1.24943 0.99298 0.93345 0.94707 1.70004 1.29764 1.44305 1.06972 0.86612 0.83374 0.77832 0.80676 1.20468 1.20905 1.18838 1.23183 0.96943 1.00990 1.03449 1.22508 1.01061 1.03944 0.89775 0.93242 0.88647 0.91739 0.92467 0.92268 0.78013 0.83621 0.86491 0.86637 0.86314 0.85742 0.85440 0.88297 0.92793 0.89577 0.90893 0.91744 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 8.20 59.84 0.49 1.64 16 2 N -1.00 -16.04 3.00 -115.86 -0.35 -16.39 16 3 C 0.19 2.69 2.92 -69.08 -0.20 2.49 16 4 H 0.12 1.87 6.51 -51.93 -0.34 1.54 16 5 C 0.07 0.74 6.83 37.16 0.25 1.00 16 6 O -0.56 -5.22 8.29 -35.23 -0.29 -5.51 16 7 C -0.09 -1.21 4.93 -104.63 -0.52 -1.73 16 8 C -0.09 -1.10 7.01 -39.58 -0.28 -1.38 16 9 C -0.14 -1.53 10.05 -39.58 -0.40 -1.93 16 10 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 12 C -0.11 -1.46 9.67 -39.58 -0.38 -1.84 16 13 S 2.60 53.81 5.05 -107.50 -0.54 53.26 16 14 O -0.97 -21.96 17.03 -57.54 -0.98 -22.94 16 15 O -0.95 -22.48 16.08 -57.54 -0.93 -23.41 16 16 C -0.55 -11.48 6.04 37.16 0.22 -11.26 16 17 C 0.04 0.94 1.45 -155.66 -0.23 0.71 16 18 C -0.51 -14.05 8.01 -34.44 -0.28 -14.33 16 19 H 0.07 1.89 7.82 -52.49 -0.41 1.48 16 20 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 21 N -0.87 -23.76 12.66 55.43 0.70 -23.06 16 22 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 26 C -0.21 -4.61 9.96 -26.69 -0.27 -4.88 16 27 C -0.13 -3.05 9.16 -26.70 -0.24 -3.30 16 28 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 29 H 0.10 1.09 4.06 -51.93 -0.21 0.88 16 30 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.37 1.93 9.12 45.56 0.42 2.35 16 34 H 0.15 1.69 3.94 -52.49 -0.21 1.49 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.61 7.95 -52.49 -0.42 1.19 16 39 H 0.13 2.67 8.14 -51.92 -0.42 2.24 16 40 H 0.10 1.74 8.11 -51.92 -0.42 1.31 16 41 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 42 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -33.51 374.96 -10.21 -43.72 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.74 Total: 8.74 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: -2.71 Total: -36.36 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.35 Total: -39.45 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -2.20 Total: -51.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.54 Total: 53.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.51 -10.21 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451756546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.475 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds