Wall clock time and date at job start Sat Apr 11 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 120.00159 * 2 1 4 4 H 1.09001 * 109.46972 * 182.64485 * 3 2 1 5 5 C 1.53001 * 109.47343 * 62.64516 * 3 2 1 6 6 O 1.42897 * 109.47175 * 295.00245 * 5 3 2 7 7 C 1.50694 * 109.47068 * 302.64488 * 3 2 1 8 8 C 1.38241 * 119.99973 * 327.88323 * 7 3 2 9 9 C 1.38235 * 120.00031 * 179.80951 * 8 7 3 10 10 C 1.38236 * 119.99960 * 0.39846 * 9 8 7 11 11 C 1.38234 * 120.00003 * 359.85445 * 10 9 8 12 12 C 1.38234 * 120.00142 * 148.15432 * 7 3 2 13 13 S 1.65603 * 119.99620 * 179.97438 * 2 1 3 14 14 O 1.42105 * 104.27439 * 153.93147 * 13 2 1 15 15 O 1.42094 * 104.27683 * 26.07925 * 13 2 1 16 16 C 1.81396 * 104.45145 * 270.00340 * 13 2 1 17 17 C 1.53004 * 109.46969 * 186.08654 * 16 13 2 18 18 C 1.50698 * 115.55002 * 294.61238 * 17 16 13 19 19 H 1.07994 * 120.00033 * 95.20586 * 18 17 16 20 20 C 1.37882 * 119.99749 * 274.93137 * 18 17 16 21 21 N 1.31508 * 120.00369 * 355.48905 * 20 18 17 22 22 Si 1.86806 * 119.99734 * 175.49141 * 20 18 17 23 23 H 1.48500 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46871 * 119.99922 * 22 20 18 25 25 H 1.48499 * 109.46948 * 239.99603 * 22 20 18 26 26 C 1.53001 * 117.49669 * 80.27977 * 17 16 13 27 27 C 1.53001 * 117.49832 * 148.94161 * 17 16 13 28 28 H 1.09001 * 109.47390 * 274.19334 * 1 2 3 29 29 H 1.08997 * 109.46926 * 34.19043 * 1 2 3 30 30 H 1.08996 * 109.47147 * 154.19031 * 1 2 3 31 31 H 1.09001 * 109.47312 * 54.99600 * 5 3 2 32 32 H 1.08997 * 109.47520 * 175.00004 * 5 3 2 33 33 H 0.96695 * 114.00661 * 179.97438 * 6 5 3 34 34 H 1.08001 * 119.99897 * 359.97438 * 8 7 3 35 35 H 1.07995 * 120.00097 * 180.22753 * 9 8 7 36 36 H 1.08000 * 120.00089 * 179.83057 * 10 9 8 37 37 H 1.08006 * 120.00043 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.00104 * 359.97438 * 12 7 3 39 39 H 1.09002 * 109.47212 * 66.09040 * 16 13 2 40 40 H 1.08999 * 109.47302 * 306.08369 * 16 13 2 41 41 H 0.96996 * 120.00686 * 185.00249 * 21 20 18 42 42 H 1.09002 * 117.49866 * 214.99672 * 26 17 16 43 43 H 1.09001 * 117.50014 * 0.02760 * 26 17 16 44 44 H 1.09004 * 117.49606 * 359.97438 * 27 17 16 45 45 H 1.09002 * 117.49633 * 144.97350 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2683 1.0700 -0.0474 5 6 1.8786 2.0418 1.2812 6 8 0.4962 2.4035 1.2876 7 6 1.7850 2.0869 -1.1963 8 6 1.4240 1.4574 -2.3730 9 6 1.0418 2.2079 -3.4692 10 6 1.0284 3.5880 -3.3913 11 6 1.3945 4.2175 -2.2164 12 6 1.7729 3.4670 -1.1189 13 16 2.2930 -1.4342 0.0006 14 8 3.5395 -1.1195 -0.6047 15 8 1.3970 -2.3563 -0.6043 16 6 2.5192 -1.8255 1.7574 17 6 3.4097 -3.0622 1.8938 18 6 2.8286 -4.3442 1.3555 19 1 3.0671 -4.6660 0.3526 20 6 1.9969 -5.1092 2.1455 21 7 1.7813 -4.7677 3.3970 22 14 1.1763 -6.6310 1.4380 23 1 1.5795 -6.7961 0.0184 24 1 1.5965 -7.8257 2.2135 25 1 -0.2989 -6.4813 1.5201 26 6 4.9210 -2.8623 1.7638 27 6 4.3025 -3.1567 3.1327 28 1 -0.3634 0.0751 1.0249 29 1 -0.3633 0.8500 -0.5775 30 1 -0.3633 -0.9251 -0.4474 31 1 2.0942 1.4154 2.1468 32 1 2.4901 2.9431 1.3235 33 1 0.2223 2.8971 2.0727 34 1 1.4380 0.3793 -2.4350 35 1 0.7562 1.7161 -4.3873 36 1 0.7324 4.1744 -4.2486 37 1 1.3844 5.2959 -2.1557 38 1 2.0588 3.9589 -0.2009 39 1 1.5492 -2.0243 2.2132 40 1 2.9907 -0.9811 2.2600 41 1 1.2554 -5.3439 3.9734 42 1 5.4950 -3.6581 1.2890 43 1 5.2809 -1.8496 1.5815 44 1 4.2557 -2.3376 3.8504 45 1 4.4691 -4.1461 3.5587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451756547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:10 Heat of formation + Delta-G solvation = -58.377960 kcal Electronic energy + Delta-G solvation = -28845.984280 eV Core-core repulsion = 24957.003156 eV Total energy + Delta-G solvation = -3888.981124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.77094 -37.32855 -36.77369 -36.35095 -35.40922 -35.01195 -32.03879 -31.66405 -30.76392 -28.58177 -28.17851 -25.73646 -25.42925 -23.45886 -22.33910 -21.19896 -20.60540 -19.50332 -18.47826 -17.74364 -17.28884 -16.70997 -16.46713 -15.82055 -15.30012 -14.98020 -14.87568 -14.66404 -14.58685 -13.96462 -13.79317 -13.59308 -13.42195 -13.19721 -12.98779 -12.78181 -12.34426 -12.10907 -12.01422 -11.94485 -11.79575 -11.30647 -11.22984 -11.05190 -11.04471 -10.95272 -10.93577 -10.78884 -10.57602 -10.44977 -10.11674 -10.06451 -9.63383 -9.06055 -8.88789 -8.84403 -8.63636 -8.54820 -8.07303 -6.13474 -4.25751 0.96611 1.39934 1.45069 3.26573 3.28654 3.37292 3.45745 3.83516 4.14703 4.37459 4.53440 4.56404 4.76889 4.87846 4.98606 5.03758 5.10432 5.12929 5.17441 5.22903 5.25474 5.41447 5.54771 5.61291 5.68021 5.69856 5.93094 5.94741 6.01420 6.06221 6.21093 6.27004 6.31509 6.37197 6.47472 6.53221 6.60390 6.61273 6.71768 6.90314 6.99647 7.02669 7.22116 7.44600 7.53664 7.79728 8.19361 8.80515 9.45978 10.93136 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.003778 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.328754 B = 7409.088113 C = 7768.093120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.002 6.002 3 C 0.187 3.813 4 H 0.122 0.878 5 C 0.066 3.934 6 O -0.556 6.556 7 C -0.073 4.073 8 C -0.099 4.099 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.125 4.125 12 C -0.102 4.102 13 S 2.601 3.399 14 O -0.970 6.970 15 O -0.945 6.945 16 C -0.552 4.552 17 C 0.038 3.962 18 C -0.514 4.514 19 H 0.068 0.932 20 C 0.080 3.920 21 N -0.874 5.874 22 Si 0.891 3.109 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.279 1.279 26 C -0.209 4.209 27 C -0.134 4.134 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.373 0.627 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.262 0.738 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 18.237 -4.158 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.837 5.837 3 C 0.080 3.920 4 H 0.140 0.860 5 C -0.014 4.014 6 O -0.360 6.360 7 C -0.075 4.075 8 C -0.118 4.118 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.143 4.143 12 C -0.120 4.120 13 S 2.699 3.301 14 O -0.960 6.960 15 O -0.936 6.936 16 C -0.685 4.685 17 C 0.035 3.965 18 C -0.551 4.551 19 H 0.086 0.914 20 C -0.125 4.125 21 N -0.510 5.510 22 Si 0.718 3.282 23 H -0.191 1.191 24 H -0.209 1.209 25 H -0.205 1.205 26 C -0.246 4.246 27 C -0.173 4.173 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.148 0.852 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.699 17.429 -5.393 18.323 hybrid contribution -0.640 -0.306 1.141 1.343 sum -2.339 17.122 -4.253 17.797 Atomic orbital electron populations 1.21442 0.78273 1.03146 1.02050 1.57811 1.15627 1.20073 1.90150 1.19842 0.97092 0.83376 0.91666 0.86008 1.22600 0.83510 0.97855 0.97440 1.86614 1.24961 1.77776 1.46689 1.19888 0.99254 0.93638 0.94680 1.21028 0.98073 1.00247 0.92402 1.21130 1.00336 0.94054 0.98501 1.21094 1.00718 0.94667 0.97873 1.21049 1.00402 0.99464 0.93411 1.20922 0.99850 0.92939 0.98310 1.05417 0.73601 0.72083 0.78951 1.93492 1.44293 1.83117 1.75113 1.93527 1.64418 1.60994 1.74623 1.30045 1.10408 1.06166 1.21909 1.18311 0.85742 0.91401 1.01009 1.20569 1.28634 1.05080 1.00789 0.91372 1.24960 0.95066 0.97713 0.94721 1.70004 1.38683 1.37088 1.05216 0.86521 0.79654 0.82081 0.79905 1.19094 1.20938 1.20511 1.23201 0.98164 1.00498 1.02770 1.22514 1.04232 1.00907 0.89628 0.92790 0.90995 0.90412 0.92661 0.92634 0.78055 0.86231 0.86200 0.86491 0.86425 0.86185 0.85207 0.88491 0.92822 0.89547 0.90816 0.91757 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.42 8.58 59.85 0.51 1.93 16 2 N -1.00 -15.79 2.12 -115.86 -0.25 -16.04 16 3 C 0.19 2.52 2.93 -69.09 -0.20 2.31 16 4 H 0.12 1.66 6.83 -51.93 -0.35 1.31 16 5 C 0.07 0.67 6.08 37.16 0.23 0.89 16 6 O -0.56 -5.47 10.53 -35.23 -0.37 -5.84 16 7 C -0.07 -0.97 4.38 -104.63 -0.46 -1.43 16 8 C -0.10 -1.41 8.28 -39.58 -0.33 -1.74 16 9 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 10 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 11 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 12 C -0.10 -1.13 8.66 -39.58 -0.34 -1.48 16 13 S 2.60 52.63 5.16 -107.50 -0.55 52.07 16 14 O -0.97 -20.84 16.54 -57.54 -0.95 -21.79 16 15 O -0.95 -22.42 16.21 -57.54 -0.93 -23.36 16 16 C -0.55 -11.47 6.03 37.16 0.22 -11.24 16 17 C 0.04 0.92 1.42 -155.66 -0.22 0.69 16 18 C -0.51 -14.08 8.20 -34.44 -0.28 -14.37 16 19 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 20 C 0.08 2.19 5.43 -17.82 -0.10 2.10 16 21 N -0.87 -24.03 12.65 55.43 0.70 -23.33 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.21 -4.57 9.96 -26.69 -0.27 -4.83 16 27 C -0.13 -3.04 9.14 -26.69 -0.24 -3.28 16 28 H 0.05 0.74 7.74 -51.93 -0.40 0.33 16 29 H 0.07 1.00 6.47 -51.93 -0.34 0.67 16 30 H 0.08 1.24 6.83 -51.93 -0.35 0.88 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.43 6.83 -51.93 -0.35 0.07 16 33 H 0.37 2.10 9.12 45.56 0.42 2.52 16 34 H 0.12 1.87 7.42 -52.49 -0.39 1.48 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.12 1.09 6.24 -52.48 -0.33 0.76 16 39 H 0.13 2.81 8.14 -51.92 -0.42 2.39 16 40 H 0.10 1.67 8.09 -51.92 -0.42 1.25 16 41 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -33.38 378.04 -10.22 -43.60 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.87 Total: 8.17 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -2.67 Total: -35.74 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.46 Total: -39.36 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.26 Total: -50.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.63 SS G_CDS: -0.55 Total: 52.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.38 -10.22 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451756547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.778 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds