Wall clock time and date at job start Sat Apr 11 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 120.00159 * 2 1 4 4 H 1.09001 * 109.46972 * 182.64485 * 3 2 1 5 5 C 1.53001 * 109.47343 * 62.64516 * 3 2 1 6 6 O 1.42897 * 109.47175 * 295.00245 * 5 3 2 7 7 C 1.50694 * 109.47068 * 302.64488 * 3 2 1 8 8 C 1.38241 * 119.99973 * 327.88323 * 7 3 2 9 9 C 1.38235 * 120.00031 * 179.80951 * 8 7 3 10 10 C 1.38236 * 119.99960 * 0.39846 * 9 8 7 11 11 C 1.38234 * 120.00003 * 359.85445 * 10 9 8 12 12 C 1.38234 * 120.00142 * 148.15432 * 7 3 2 13 13 S 1.65603 * 119.99620 * 179.97438 * 2 1 3 14 14 O 1.42105 * 104.27439 * 153.93147 * 13 2 1 15 15 O 1.42094 * 104.27683 * 26.07925 * 13 2 1 16 16 C 1.81396 * 104.45145 * 270.00340 * 13 2 1 17 17 C 1.53004 * 109.46969 * 186.08654 * 16 13 2 18 18 C 1.50698 * 115.55002 * 294.61238 * 17 16 13 19 19 H 1.07994 * 120.00033 * 95.20586 * 18 17 16 20 20 C 1.37882 * 119.99749 * 274.93137 * 18 17 16 21 21 N 1.31508 * 120.00369 * 355.48905 * 20 18 17 22 22 Si 1.86806 * 119.99734 * 175.49141 * 20 18 17 23 23 H 1.48500 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46871 * 119.99922 * 22 20 18 25 25 H 1.48499 * 109.46948 * 239.99603 * 22 20 18 26 26 C 1.53001 * 117.49669 * 80.27977 * 17 16 13 27 27 C 1.53001 * 117.49832 * 148.94161 * 17 16 13 28 28 H 1.09001 * 109.47390 * 274.19334 * 1 2 3 29 29 H 1.08997 * 109.46926 * 34.19043 * 1 2 3 30 30 H 1.08996 * 109.47147 * 154.19031 * 1 2 3 31 31 H 1.09001 * 109.47312 * 54.99600 * 5 3 2 32 32 H 1.08997 * 109.47520 * 175.00004 * 5 3 2 33 33 H 0.96695 * 114.00661 * 179.97438 * 6 5 3 34 34 H 1.08001 * 119.99897 * 359.97438 * 8 7 3 35 35 H 1.07995 * 120.00097 * 180.22753 * 9 8 7 36 36 H 1.08000 * 120.00089 * 179.83057 * 10 9 8 37 37 H 1.08006 * 120.00043 * 179.97438 * 11 10 9 38 38 H 1.08003 * 120.00104 * 359.97438 * 12 7 3 39 39 H 1.09002 * 109.47212 * 66.09040 * 16 13 2 40 40 H 1.08999 * 109.47302 * 306.08369 * 16 13 2 41 41 H 0.96996 * 120.00686 * 185.00249 * 21 20 18 42 42 H 1.09002 * 117.49866 * 214.99672 * 26 17 16 43 43 H 1.09001 * 117.50014 * 0.02760 * 26 17 16 44 44 H 1.09004 * 117.49606 * 359.97438 * 27 17 16 45 45 H 1.09002 * 117.49633 * 144.97350 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 1 3.2683 1.0700 -0.0474 5 6 1.8786 2.0418 1.2812 6 8 0.4962 2.4035 1.2876 7 6 1.7850 2.0869 -1.1963 8 6 1.4240 1.4574 -2.3730 9 6 1.0418 2.2079 -3.4692 10 6 1.0284 3.5880 -3.3913 11 6 1.3945 4.2175 -2.2164 12 6 1.7729 3.4670 -1.1189 13 16 2.2930 -1.4342 0.0006 14 8 3.5395 -1.1195 -0.6047 15 8 1.3970 -2.3563 -0.6043 16 6 2.5192 -1.8255 1.7574 17 6 3.4097 -3.0622 1.8938 18 6 2.8286 -4.3442 1.3555 19 1 3.0671 -4.6660 0.3526 20 6 1.9969 -5.1092 2.1455 21 7 1.7813 -4.7677 3.3970 22 14 1.1763 -6.6310 1.4380 23 1 1.5795 -6.7961 0.0184 24 1 1.5965 -7.8257 2.2135 25 1 -0.2989 -6.4813 1.5201 26 6 4.9210 -2.8623 1.7638 27 6 4.3025 -3.1567 3.1327 28 1 -0.3634 0.0751 1.0249 29 1 -0.3633 0.8500 -0.5775 30 1 -0.3633 -0.9251 -0.4474 31 1 2.0942 1.4154 2.1468 32 1 2.4901 2.9431 1.3235 33 1 0.2223 2.8971 2.0727 34 1 1.4380 0.3793 -2.4350 35 1 0.7562 1.7161 -4.3873 36 1 0.7324 4.1744 -4.2486 37 1 1.3844 5.2959 -2.1557 38 1 2.0588 3.9589 -0.2009 39 1 1.5492 -2.0243 2.2132 40 1 2.9907 -0.9811 2.2600 41 1 1.2554 -5.3439 3.9734 42 1 5.4950 -3.6581 1.2890 43 1 5.2809 -1.8496 1.5815 44 1 4.2557 -2.3376 3.8504 45 1 4.4691 -4.1461 3.5587 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451756547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:09 Heat of formation + Delta-G solvation = -81.166701 kcal Electronic energy + Delta-G solvation = -28846.972474 eV Core-core repulsion = 24957.003156 eV Total energy + Delta-G solvation = -3889.969318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.68257 -38.58799 -38.21320 -38.02740 -36.88063 -36.20343 -34.09779 -32.63646 -31.65339 -29.93154 -29.43817 -27.53967 -26.79691 -24.39358 -23.21797 -22.97493 -21.70523 -21.24275 -19.84022 -18.95196 -18.48330 -18.16715 -17.74275 -17.13471 -16.80316 -16.67884 -16.06476 -15.97905 -15.59613 -15.54954 -15.02207 -14.89259 -14.56953 -14.42474 -13.91882 -13.89646 -13.80614 -13.64107 -13.54036 -13.17561 -13.14639 -13.00598 -12.95338 -12.87657 -12.55811 -12.46385 -12.31716 -12.19070 -11.93323 -11.91083 -11.73837 -11.48417 -11.00498 -10.77750 -10.53024 -10.17771 -9.79138 -9.74436 -9.53232 -8.20854 -6.36850 -0.60895 0.50052 0.56650 1.33551 1.38509 1.49778 1.86657 2.37371 2.93460 2.95605 3.05100 3.29463 3.39617 3.43102 3.54613 3.88629 4.01337 4.13090 4.17022 4.18977 4.30673 4.31468 4.48058 4.48815 4.58800 4.61803 4.64654 4.73069 4.76383 4.81891 4.86813 4.97961 5.08181 5.12065 5.15055 5.20154 5.21712 5.42926 5.53451 5.62747 5.64225 5.67351 5.69557 5.84951 6.17306 6.20434 6.69751 7.06394 7.35815 8.85321 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018547 B = 0.003778 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.328754 B = 7409.088113 C = 7768.093120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.991 5.991 3 C 0.174 3.826 4 H 0.116 0.884 5 C 0.070 3.930 6 O -0.571 6.571 7 C -0.086 4.086 8 C -0.131 4.131 9 C -0.135 4.135 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.100 4.100 13 S 2.613 3.387 14 O -0.987 6.987 15 O -0.991 6.991 16 C -0.547 4.547 17 C 0.004 3.996 18 C -0.533 4.533 19 H 0.045 0.955 20 C 0.043 3.957 21 N -0.890 5.890 22 Si 0.932 3.068 23 H -0.276 1.276 24 H -0.269 1.269 25 H -0.275 1.275 26 C -0.197 4.197 27 C -0.129 4.129 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.266 0.734 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 21.474 -3.401 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.828 5.828 3 C 0.069 3.931 4 H 0.134 0.866 5 C -0.009 4.009 6 O -0.378 6.378 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.119 4.119 13 S 2.712 3.288 14 O -0.978 6.978 15 O -0.981 6.981 16 C -0.680 4.680 17 C 0.002 3.998 18 C -0.571 4.571 19 H 0.063 0.937 20 C -0.160 4.160 21 N -0.526 5.526 22 Si 0.758 3.242 23 H -0.201 1.201 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.234 4.234 27 C -0.168 4.168 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.243 0.757 34 H 0.108 0.892 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.153 0.847 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.764 20.663 -4.620 21.247 hybrid contribution -0.617 -1.208 0.837 1.594 sum -2.381 19.456 -3.783 19.963 Atomic orbital electron populations 1.21454 0.77604 1.02493 1.02869 1.57379 1.15761 1.19705 1.89977 1.20187 0.96520 0.82436 0.93992 0.86626 1.22528 0.84348 0.98798 0.95232 1.86558 1.24715 1.78326 1.48222 1.19951 1.00087 0.94748 0.94031 1.21000 1.00671 0.99141 0.94153 1.21317 1.00506 0.95130 0.98299 1.21439 0.99795 0.93985 0.99155 1.21478 0.98754 1.01094 0.92698 1.21209 0.99084 0.91879 0.99701 1.04733 0.73003 0.72439 0.78596 1.93453 1.45279 1.83559 1.75490 1.93462 1.65507 1.63485 1.75695 1.29907 1.09457 1.06115 1.22499 1.18438 0.87344 0.91571 1.02470 1.20730 1.29319 1.07018 0.99984 0.93696 1.25484 0.95528 0.99825 0.95146 1.70035 1.39162 1.37854 1.05587 0.85895 0.79062 0.80331 0.78949 1.20088 1.19369 1.20039 1.23250 0.96543 1.01786 1.01835 1.22456 1.03653 1.00655 0.90001 0.91321 0.90029 0.92430 0.92293 0.89368 0.75730 0.89176 0.85466 0.83878 0.83265 0.83633 0.86365 0.84658 0.92523 0.90205 0.88103 0.89271 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.99 8.58 127.77 1.10 4.08 16 2 N -0.99 -31.11 2.12 -520.46 -1.11 -32.22 16 3 C 0.17 4.44 2.93 44.24 0.13 4.57 16 4 H 0.12 3.04 6.83 -2.39 -0.02 3.02 16 5 C 0.07 1.20 6.08 71.98 0.44 1.64 16 6 O -0.57 -9.32 10.53 -148.98 -1.57 -10.89 16 7 C -0.09 -2.18 4.38 -19.87 -0.09 -2.27 16 8 C -0.13 -3.78 8.28 22.27 0.18 -3.59 16 9 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 10 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 11 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 12 C -0.10 -1.92 8.66 22.27 0.19 -1.72 16 13 S 2.61 107.86 5.16 -56.49 -0.29 107.57 16 14 O -0.99 -43.11 16.54 -127.65 -2.11 -45.22 16 15 O -0.99 -49.38 16.21 -127.65 -2.07 -51.45 16 16 C -0.55 -22.44 6.03 71.98 0.43 -22.00 16 17 C 0.00 0.19 1.42 -52.93 -0.08 0.12 16 18 C -0.53 -30.03 8.20 25.60 0.21 -29.82 16 19 H 0.04 2.66 7.82 -2.91 -0.02 2.63 16 20 C 0.04 2.39 5.43 84.66 0.46 2.85 16 21 N -0.89 -49.21 12.65 21.45 0.27 -48.94 16 22 Si 0.93 44.85 29.54 68.60 2.03 46.87 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 26 C -0.20 -8.46 9.96 30.62 0.30 -8.15 16 27 C -0.13 -5.74 9.14 30.62 0.28 -5.46 16 28 H 0.07 1.81 7.74 -2.39 -0.02 1.80 16 29 H 0.08 2.26 6.47 -2.39 -0.02 2.25 16 30 H 0.06 1.93 6.83 -2.39 -0.02 1.91 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.95 6.83 -2.39 -0.02 0.93 16 33 H 0.39 2.92 9.12 -74.06 -0.68 2.25 16 34 H 0.09 3.04 7.42 -2.91 -0.02 3.02 16 35 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.15 1.95 6.24 -2.91 -0.02 1.94 16 39 H 0.12 5.13 8.14 -2.39 -0.02 5.11 16 40 H 0.14 4.35 8.09 -2.39 -0.02 4.33 16 41 H 0.27 13.89 8.32 -92.71 -0.77 13.12 16 42 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 44 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 45 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -74.07 378.04 -0.29 -74.36 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.32 Total: 26.63 kcal Atomic # 6 Polarization: -70.95 SS G_CDS: 4.24 Total: -66.71 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.83 Total: -81.16 kcal Atomic # 8 Polarization: -101.81 SS G_CDS: -5.75 Total: -107.56 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 107.86 SS G_CDS: -0.29 Total: 107.57 kcal Total: -74.07 -0.29 -74.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451756547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.806 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds