Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00388 * 2 1 4 4 C 1.53001 * 109.47295 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47310 * 64.99954 * 4 3 2 6 6 C 1.37095 * 119.99887 * 275.27083 * 5 4 3 7 7 H 1.07996 * 120.00060 * 338.93392 * 6 5 4 8 8 C 1.38950 * 120.00103 * 158.93326 * 6 5 4 9 9 N 1.31418 * 119.99680 * 352.22966 * 8 6 5 10 10 Si 1.86800 * 120.00248 * 172.22946 * 8 6 5 11 11 H 1.48505 * 109.47017 * 90.00216 * 10 8 6 12 12 H 1.48504 * 109.47287 * 209.99975 * 10 8 6 13 13 H 1.48493 * 109.47018 * 330.00353 * 10 8 6 14 14 C 1.34775 * 120.00092 * 95.26711 * 5 4 3 15 15 O 1.21295 * 119.99915 * 128.12540 * 14 5 4 16 16 C 1.50696 * 120.00492 * 308.13048 * 14 5 4 17 17 H 1.09003 * 109.46930 * 44.68507 * 16 14 5 18 18 C 1.53001 * 109.47031 * 284.68498 * 16 14 5 19 19 S 1.81405 * 109.47601 * 164.68206 * 16 14 5 20 20 C 1.76196 * 102.99856 * 291.78993 * 19 16 14 21 21 C 1.38926 * 120.02513 * 353.96866 * 20 19 16 22 22 C 1.38090 * 119.96922 * 180.27550 * 21 20 19 23 23 C 1.38712 * 120.02795 * 359.49940 * 22 21 20 24 24 O 1.36011 * 119.97441 * 180.27615 * 23 22 21 25 25 C 1.42898 * 116.99829 * 179.97438 * 24 23 22 26 26 C 1.38705 * 120.05110 * 0.24866 * 23 22 21 27 27 C 1.38097 * 120.02384 * 0.02562 * 26 23 22 28 28 H 1.09005 * 109.46699 * 59.99659 * 1 2 3 29 29 H 1.08994 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47308 * 300.00600 * 1 2 3 31 31 H 1.09003 * 109.47342 * 59.99313 * 3 2 1 32 32 H 1.09007 * 109.47410 * 299.99885 * 3 2 1 33 33 H 1.08999 * 109.46766 * 304.99437 * 4 3 2 34 34 H 1.09008 * 109.47252 * 185.00124 * 4 3 2 35 35 H 0.97003 * 119.99694 * 185.00366 * 9 8 6 36 36 H 1.09006 * 109.47002 * 54.73773 * 18 16 14 37 37 H 1.09000 * 109.46989 * 174.73487 * 18 16 14 38 38 H 1.08996 * 109.47323 * 294.73348 * 18 16 14 39 39 H 1.07994 * 120.01194 * 0.05070 * 21 20 19 40 40 H 1.08002 * 119.98522 * 179.77294 * 22 21 20 41 41 H 1.08999 * 109.47430 * 300.00018 * 25 24 23 42 42 H 1.09000 * 109.46949 * 60.00086 * 25 24 23 43 43 H 1.09004 * 109.46869 * 179.97438 * 25 24 23 44 44 H 1.07999 * 119.98882 * 180.02562 * 26 23 22 45 45 H 1.08004 * 120.01102 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5638 -1.2508 6 6 3.9947 -0.8019 -1.3695 7 1 4.0208 -1.4205 -0.4847 8 6 3.9791 -1.3901 -2.6283 9 7 3.7936 -0.6490 -3.6976 10 14 4.2218 -3.2342 -2.8006 11 1 2.9033 -3.9149 -2.7395 12 1 4.8709 -3.5285 -4.1035 13 1 5.0840 -3.7253 -1.6959 14 6 4.3650 1.3353 -2.2854 15 8 5.4344 1.1367 -2.8223 16 6 3.4707 2.4449 -2.7753 17 1 3.0780 2.9984 -1.9223 18 6 2.3101 1.8492 -3.5747 19 16 4.4236 3.5658 -3.8366 20 6 5.5401 4.3280 -2.7065 21 6 5.4264 4.0814 -1.3440 22 6 6.2985 4.6839 -0.4589 23 6 7.2941 5.5268 -0.9305 24 8 8.1559 6.1152 -0.0582 25 6 9.1570 6.9708 -0.6129 26 6 7.4117 5.7696 -2.2911 27 6 6.5373 5.1727 -3.1777 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5684 0.8428 34 1 3.9786 2.1764 0.0902 35 1 3.7102 -1.0671 -4.5689 36 1 1.7938 1.1061 -2.9668 37 1 1.6137 2.6414 -3.8494 38 1 2.6960 1.3756 -4.4774 39 1 4.6542 3.4217 -0.9771 40 1 6.2080 4.4953 0.6007 41 1 9.7808 6.4013 -1.3018 42 1 8.6781 7.7901 -1.1492 43 1 9.7752 7.3742 0.1891 44 1 8.1875 6.4257 -2.6572 45 1 6.6293 5.3616 -4.2371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457181121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -77.780100 kcal Electronic energy + Delta-G solvation = -28525.556552 eV Core-core repulsion = 24635.734088 eV Total energy + Delta-G solvation = -3889.822464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.00626 -40.47633 -38.48989 -38.25964 -36.05536 -34.13499 -33.44358 -32.12607 -31.18856 -30.32079 -28.11390 -27.28110 -26.65004 -25.33157 -23.89310 -23.30212 -23.11797 -21.02354 -19.31283 -18.81618 -18.15596 -17.60172 -17.30855 -17.07046 -16.78508 -16.60689 -16.41000 -16.16689 -15.90158 -15.58463 -15.44502 -15.18775 -14.75967 -14.54679 -14.03108 -13.90658 -13.77321 -13.58177 -13.35549 -13.04847 -12.86239 -12.83720 -12.74745 -12.60045 -12.51472 -12.37182 -12.16714 -12.11700 -12.06620 -11.91518 -11.72099 -11.17672 -10.94039 -10.37420 -10.13734 -10.07384 -9.99511 -9.16249 -8.07945 -8.07120 -5.56158 0.24713 0.30196 0.66971 1.41620 1.46644 1.50007 1.54208 2.08589 2.38056 2.49392 2.66986 3.01633 3.20059 3.43331 3.73085 3.82014 3.97438 4.01064 4.19842 4.26134 4.28514 4.36587 4.43985 4.45498 4.47265 4.49188 4.59786 4.63120 4.68531 4.70424 4.75653 4.90761 4.91692 4.95073 4.96370 5.03768 5.06275 5.25952 5.31458 5.50297 5.60299 5.62709 6.18434 6.43030 6.52298 7.11158 7.43345 7.77384 8.21229 9.02544 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.003937 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.356769 B = 7110.253480 C = 7552.607025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.394 6.394 3 C 0.047 3.953 4 C 0.115 3.885 5 N -0.529 5.529 6 C -0.277 4.277 7 H 0.078 0.922 8 C -0.025 4.025 9 N -0.891 5.891 10 Si 0.977 3.023 11 H -0.275 1.275 12 H -0.298 1.298 13 H -0.274 1.274 14 C 0.555 3.445 15 O -0.552 6.552 16 C -0.081 4.081 17 H 0.102 0.898 18 C -0.087 4.087 19 S -0.105 6.105 20 C -0.122 4.122 21 C -0.106 4.106 22 C -0.139 4.139 23 C 0.111 3.889 24 O -0.331 6.331 25 C 0.016 3.984 26 C -0.182 4.182 27 C -0.074 4.074 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.119 0.881 40 H 0.145 0.855 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.121 0.879 44 H 0.163 0.837 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 15.046 6.456 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.313 6.313 3 C -0.031 4.031 4 C -0.009 4.009 5 N -0.256 5.256 6 C -0.405 4.405 7 H 0.096 0.904 8 C -0.224 4.224 9 N -0.534 5.534 10 Si 0.804 3.196 11 H -0.201 1.201 12 H -0.225 1.225 13 H -0.199 1.199 14 C 0.343 3.657 15 O -0.428 6.428 16 C -0.213 4.213 17 H 0.120 0.880 18 C -0.146 4.146 19 S 0.140 5.860 20 C -0.235 4.235 21 C -0.130 4.130 22 C -0.159 4.159 23 C 0.063 3.937 24 O -0.245 6.245 25 C -0.078 4.078 26 C -0.202 4.202 27 C -0.098 4.098 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.137 0.863 40 H 0.163 0.837 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.139 0.861 44 H 0.180 0.820 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.063 14.829 4.950 15.633 hybrid contribution -0.090 -1.313 0.705 1.494 sum -0.027 13.516 5.655 14.651 Atomic orbital electron populations 1.22808 0.81018 1.02836 1.00126 1.88076 1.20014 1.27905 1.95275 1.23188 0.94522 0.85128 1.00250 1.21660 0.92925 0.97948 0.88364 1.42904 1.65775 1.04731 1.12184 1.19331 1.47409 0.81018 0.92765 0.90402 1.25679 0.98831 1.02391 0.95518 1.69604 1.49932 1.35431 0.98388 0.85145 0.77909 0.79929 0.76586 1.20051 1.22499 1.19909 1.19306 0.84732 0.81420 0.80259 1.90445 1.24300 1.69213 1.58844 1.23893 0.99884 0.97035 1.00533 0.87962 1.21188 0.93990 0.99508 0.99906 1.84868 1.39772 1.44423 1.16940 1.21816 1.02198 1.03033 0.96487 1.21070 1.00206 0.99699 0.91985 1.20445 0.95569 0.99112 1.00821 1.19021 0.91185 0.94343 0.89104 1.86066 1.42749 1.60733 1.34979 1.23376 0.89579 0.92933 1.01915 1.21391 1.02527 1.04709 0.91608 1.20771 0.92749 0.95711 1.00532 0.94660 0.89853 0.92522 0.90738 0.93986 0.90825 0.89918 0.93317 0.91893 0.90754 0.92754 0.86350 0.83723 0.92064 0.91259 0.86077 0.81953 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.39 -14.51 9.93 -148.98 -1.48 -15.99 16 3 C 0.05 1.52 6.14 71.98 0.44 1.97 16 4 C 0.12 4.29 5.48 86.38 0.47 4.77 16 5 N -0.53 -25.70 2.60 -635.55 -1.65 -27.35 16 6 C -0.28 -15.01 8.84 84.04 0.74 -14.27 16 7 H 0.08 4.18 7.84 -2.91 -0.02 4.15 16 8 C -0.02 -1.37 5.12 84.93 0.43 -0.93 16 9 N -0.89 -51.18 8.66 21.66 0.19 -51.00 16 10 Si 0.98 46.16 29.56 68.60 2.03 48.19 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 14 C 0.56 27.75 2.43 87.66 0.21 27.96 16 15 O -0.55 -32.92 15.30 -3.08 -0.05 -32.97 16 16 C -0.08 -3.33 1.75 29.85 0.05 -3.28 16 17 H 0.10 3.69 5.39 -2.39 -0.01 3.68 16 18 C -0.09 -3.57 7.88 71.98 0.57 -3.00 16 19 S -0.10 -4.17 20.53 -56.49 -1.16 -5.33 16 20 C -0.12 -4.48 5.98 22.60 0.14 -4.34 16 21 C -0.11 -3.73 8.81 22.40 0.20 -3.53 16 22 C -0.14 -4.29 9.98 22.35 0.22 -4.06 16 23 C 0.11 3.11 6.69 22.49 0.15 3.26 16 24 O -0.33 -7.96 10.50 -93.67 -0.98 -8.94 16 25 C 0.02 0.23 9.81 113.37 1.11 1.34 16 26 C -0.18 -4.73 9.03 22.35 0.20 -4.53 16 27 C -0.07 -2.28 9.79 22.40 0.22 -2.06 16 28 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.38 5.68 -2.38 -0.01 1.36 16 33 H 0.07 2.70 8.08 -2.39 -0.02 2.68 16 34 H 0.08 2.69 5.66 -2.38 -0.01 2.67 16 35 H 0.26 14.61 8.32 -92.71 -0.77 13.84 16 36 H 0.06 2.78 7.54 -2.38 -0.02 2.76 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 2.54 7.22 -2.39 -0.02 2.53 16 39 H 0.12 4.21 2.84 -2.91 -0.01 4.21 16 40 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 41 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 42 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 43 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.16 2.96 6.29 -2.91 -0.02 2.94 16 45 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -74.17 372.28 4.31 -69.85 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.01 Total: 22.20 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 6.41 Total: 1.33 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -1.46 Total: -78.35 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -2.51 Total: -57.90 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -1.16 Total: -5.33 kcal Total: -74.17 4.31 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.926 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds