Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99861 * 2 1 4 4 C 1.53001 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46511 * 109.47151 * 65.00004 * 4 3 2 6 6 C 1.37095 * 120.00091 * 270.00235 * 5 4 3 7 7 H 1.08001 * 120.00117 * 57.96785 * 6 5 4 8 8 C 1.38947 * 119.99884 * 237.96916 * 6 5 4 9 9 N 1.31411 * 119.99943 * 20.98341 * 8 6 5 10 10 Si 1.86799 * 120.00211 * 200.97742 * 8 6 5 11 11 H 1.48498 * 109.46952 * 90.00167 * 10 8 6 12 12 H 1.48500 * 109.47233 * 210.00433 * 10 8 6 13 13 H 1.48499 * 109.46975 * 330.00147 * 10 8 6 14 14 C 1.34777 * 119.99754 * 89.99994 * 5 4 3 15 15 O 1.21297 * 119.99944 * 355.74078 * 14 5 4 16 16 C 1.50693 * 119.99948 * 175.74074 * 14 5 4 17 17 H 1.09006 * 109.47092 * 318.28276 * 16 14 5 18 18 C 1.53004 * 109.47135 * 78.28346 * 16 14 5 19 19 C 1.52998 * 109.47228 * 198.28400 * 16 14 5 20 20 H 1.09005 * 109.68855 * 292.63474 * 19 16 14 21 21 O 1.43011 * 109.69091 * 53.17596 * 19 16 14 22 22 C 1.43042 * 114.24684 * 171.78485 * 21 19 16 23 23 C 1.53437 * 109.08279 * 288.74049 * 22 21 19 24 24 C 1.51404 * 107.90261 * 47.44774 * 23 22 21 25 25 S 1.75520 * 126.26911 * 164.80403 * 24 23 22 26 26 C 1.75823 * 91.03082 * 180.02562 * 25 24 23 27 27 C 1.33066 * 109.61106 * 359.68465 * 26 25 24 28 28 C 1.34867 * 123.68560 * 344.50267 * 24 23 22 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46832 * 299.99839 * 1 2 3 31 31 H 1.09003 * 109.47424 * 59.99306 * 1 2 3 32 32 H 1.08997 * 109.47257 * 60.00702 * 3 2 1 33 33 H 1.09002 * 109.47100 * 300.00262 * 3 2 1 34 34 H 1.09004 * 109.47138 * 305.00738 * 4 3 2 35 35 H 1.08998 * 109.47217 * 184.99830 * 4 3 2 36 36 H 0.97000 * 120.00391 * 184.92473 * 9 8 6 37 37 H 1.08997 * 109.47072 * 209.73147 * 18 16 14 38 38 H 1.09003 * 109.46819 * 329.72651 * 18 16 14 39 39 H 1.08993 * 109.47341 * 89.72774 * 18 16 14 40 40 H 1.08995 * 109.54260 * 168.85765 * 22 21 19 41 41 H 1.09007 * 109.59933 * 48.65243 * 22 21 19 42 42 H 1.08998 * 109.76938 * 287.85575 * 23 22 21 43 43 H 1.08998 * 109.82419 * 167.07775 * 23 22 21 44 44 H 1.07998 * 125.18825 * 179.89101 * 26 25 24 45 45 H 1.07999 * 122.17861 * 180.25182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0968 -0.7986 -1.3371 7 1 3.2436 -1.4300 -1.1376 8 6 5.3174 -1.3677 -1.6792 9 7 6.4283 -0.6835 -1.5227 10 14 5.3791 -3.1056 -2.3615 11 1 5.2671 -3.0605 -3.8416 12 1 6.6664 -3.7411 -1.9816 13 1 4.2530 -3.8966 -1.8037 14 6 4.2615 1.3337 -2.3219 15 8 4.0807 2.5321 -2.2724 16 6 4.8057 0.7051 -3.5787 17 1 5.5462 -0.0503 -3.3158 18 6 3.6630 0.0500 -4.3573 19 6 5.4614 1.7823 -4.4451 20 1 4.7000 2.4676 -4.8178 21 8 6.4224 2.5047 -3.6706 22 6 7.2263 3.4121 -4.4298 23 6 8.2040 2.6097 -5.2985 24 6 7.4209 1.5137 -5.9897 25 16 7.9597 0.5585 -7.3601 26 6 6.4452 -0.3346 -7.3735 27 6 5.6590 0.1046 -6.3940 28 6 6.1830 1.1296 -5.6166 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1765 0.0889 36 1 7.2721 -1.0523 -1.8273 37 1 4.0474 -0.8013 -4.9191 38 1 2.8970 -0.2904 -3.6606 39 1 3.2307 0.7750 -5.0468 40 1 7.7857 4.0576 -3.7528 41 1 6.5865 4.0209 -5.0686 42 1 8.9790 2.1696 -4.6710 43 1 8.6592 3.2632 -6.0427 44 1 6.1932 -1.1220 -8.0684 45 1 4.6773 -0.3087 -6.2152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -72.021879 kcal Electronic energy + Delta-G solvation = -29392.005206 eV Core-core repulsion = 25502.432437 eV Total energy + Delta-G solvation = -3889.572769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.77663 -38.37480 -37.01965 -36.11916 -34.41704 -33.50182 -31.85473 -31.27977 -29.06092 -28.41950 -25.88667 -24.83182 -24.65931 -24.21442 -22.80983 -21.58072 -20.81766 -19.03311 -18.00560 -17.13989 -16.76997 -16.08717 -15.93813 -15.59672 -15.17350 -14.85046 -14.73740 -14.38453 -14.33552 -14.11441 -13.88027 -13.28246 -13.17844 -12.79319 -12.74358 -12.38564 -12.07976 -12.02435 -11.77733 -11.69347 -11.52270 -11.29292 -11.13431 -11.06879 -10.99447 -10.80767 -10.53695 -10.43193 -10.36598 -10.34390 -10.20201 -10.06312 -9.09700 -9.03886 -8.61880 -8.31133 -8.07948 -7.97532 -7.12308 -6.23399 -4.10846 1.22375 1.84413 2.19604 2.95605 3.19223 3.29267 3.30761 4.12878 4.22464 4.36224 4.47313 4.85375 4.90847 5.02904 5.11255 5.24337 5.42262 5.46941 5.59857 5.65679 5.68305 5.75181 5.83262 5.87311 5.92952 5.98283 6.00545 6.02384 6.12695 6.17485 6.19702 6.28613 6.34436 6.43879 6.54749 6.62872 6.75136 6.86677 6.92082 6.97659 7.28417 7.62890 7.77676 7.86702 8.18288 8.81749 9.08216 9.73856 10.16423 10.76637 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.004676 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.885699 B = 5986.032384 C = 6817.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.053 3.947 4 C 0.117 3.883 5 N -0.447 5.447 6 C -0.331 4.331 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.845 5.845 10 Si 0.888 3.112 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.530 3.470 15 O -0.603 6.603 16 C -0.095 4.095 17 H 0.132 0.868 18 C -0.136 4.136 19 C 0.178 3.822 20 H 0.067 0.933 21 O -0.342 6.342 22 C 0.066 3.934 23 C -0.080 4.080 24 C -0.176 4.176 25 S 0.072 5.928 26 C -0.221 4.221 27 C -0.125 4.125 28 C -0.126 4.126 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.267 0.733 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.162 0.838 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 2.443 -8.042 8.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.025 4.025 4 C -0.006 4.006 5 N -0.167 5.167 6 C -0.459 4.459 7 H 0.105 0.895 8 C -0.155 4.155 9 N -0.480 5.480 10 Si 0.714 3.286 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.320 3.680 15 O -0.488 6.488 16 C -0.117 4.117 17 H 0.149 0.851 18 C -0.193 4.193 19 C 0.117 3.883 20 H 0.084 0.916 21 O -0.259 6.259 22 C -0.014 4.014 23 C -0.119 4.119 24 C -0.292 4.292 25 S 0.337 5.663 26 C -0.355 4.355 27 C -0.155 4.155 28 C -0.138 4.138 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.179 0.821 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.289 2.706 -8.649 9.067 hybrid contribution -1.136 -0.834 0.130 1.415 sum -0.847 1.872 -8.519 8.763 Atomic orbital electron populations 1.22641 0.83148 1.01801 0.98949 1.88075 1.17696 1.27987 1.95102 1.23051 0.96284 0.84255 0.98891 1.21384 0.90197 0.98846 0.90219 1.43091 1.60569 1.06233 1.06844 1.19316 0.95083 0.80887 1.50607 0.89502 1.25573 0.95074 0.98268 0.96546 1.70103 0.97982 1.39569 1.40382 0.86536 0.77972 0.84127 0.79956 1.19756 1.21083 1.19069 1.20021 0.77612 0.85734 0.84638 1.90486 1.58123 1.15881 1.84279 1.21314 0.99250 0.97990 0.93116 0.85064 1.21868 0.98344 0.99384 0.99723 1.20930 0.88571 0.91768 0.87005 0.91562 1.88236 1.49609 1.55425 1.32661 1.22532 0.92533 0.91533 0.94759 1.20987 0.98179 0.94522 0.98236 1.24670 0.98852 1.04322 1.01402 1.83785 1.19254 1.32436 1.30819 1.25350 0.97504 1.07072 1.05618 1.20536 1.02673 0.97340 0.94939 1.20446 0.95163 0.98509 0.99693 0.90370 0.95122 0.94857 0.94334 0.93622 0.90933 0.90808 0.92222 0.92324 0.90566 0.93542 0.88594 0.93315 0.89526 0.90196 0.82053 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.28 9.77 -35.23 -0.34 -7.62 16 3 C 0.05 1.03 6.28 37.16 0.23 1.26 16 4 C 0.12 2.65 5.77 -4.03 -0.02 2.62 16 5 N -0.45 -11.22 2.35 -114.80 -0.27 -11.49 16 6 C -0.33 -8.41 7.34 -14.94 -0.11 -8.52 16 7 H 0.09 2.25 7.40 -52.49 -0.39 1.86 16 8 C 0.05 1.32 3.30 -17.47 -0.06 1.26 16 9 N -0.85 -22.80 12.00 55.50 0.67 -22.13 16 10 Si 0.89 19.66 29.61 -169.99 -5.03 14.63 16 11 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.53 13.44 5.97 -10.99 -0.07 13.38 16 15 O -0.60 -16.21 15.25 -10.32 -0.16 -16.37 16 16 C -0.10 -2.16 1.59 -91.77 -0.15 -2.31 16 17 H 0.13 3.29 4.30 -51.93 -0.22 3.07 16 18 C -0.14 -2.62 7.57 37.16 0.28 -2.34 16 19 C 0.18 3.72 2.01 -27.09 -0.05 3.66 16 20 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 21 O -0.34 -7.55 9.31 -51.10 -0.48 -8.02 16 22 C 0.07 1.08 6.83 37.38 0.26 1.34 16 23 C -0.08 -1.18 6.55 -27.31 -0.18 -1.36 16 24 C -0.18 -2.95 6.44 -35.16 -0.23 -3.17 16 25 S 0.07 1.02 23.32 -107.50 -2.51 -1.48 16 26 C -0.22 -3.20 11.21 28.93 0.32 -2.88 16 27 C -0.13 -2.08 8.98 -41.13 -0.37 -2.45 16 28 C -0.13 -2.32 5.44 -104.78 -0.57 -2.89 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.64 8.04 -51.93 -0.42 1.22 16 35 H 0.07 1.68 7.48 -51.93 -0.39 1.30 16 36 H 0.27 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.06 1.04 5.82 -51.93 -0.30 0.74 16 38 H 0.08 1.55 7.09 -51.93 -0.37 1.18 16 39 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.16 2.42 4.49 -52.49 -0.24 2.19 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -30.96 369.03 -8.65 -39.61 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.49 Total: 8.14 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.41 Total: -0.81 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.40 Total: -33.62 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.98 Total: -32.02 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.96 -8.65 -39.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.412 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds