Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99861 * 2 1 4 4 C 1.53001 * 109.46902 * 180.02562 * 3 2 1 5 5 N 1.46511 * 109.47151 * 65.00004 * 4 3 2 6 6 C 1.37095 * 120.00091 * 270.00235 * 5 4 3 7 7 H 1.08001 * 120.00117 * 57.96785 * 6 5 4 8 8 C 1.38947 * 119.99884 * 237.96916 * 6 5 4 9 9 N 1.31411 * 119.99943 * 20.98341 * 8 6 5 10 10 Si 1.86799 * 120.00211 * 200.97742 * 8 6 5 11 11 H 1.48498 * 109.46952 * 90.00167 * 10 8 6 12 12 H 1.48500 * 109.47233 * 210.00433 * 10 8 6 13 13 H 1.48499 * 109.46975 * 330.00147 * 10 8 6 14 14 C 1.34777 * 119.99754 * 89.99994 * 5 4 3 15 15 O 1.21297 * 119.99944 * 355.74078 * 14 5 4 16 16 C 1.50693 * 119.99948 * 175.74074 * 14 5 4 17 17 H 1.09006 * 109.47092 * 318.28276 * 16 14 5 18 18 C 1.53004 * 109.47135 * 78.28346 * 16 14 5 19 19 C 1.52998 * 109.47228 * 198.28400 * 16 14 5 20 20 H 1.09005 * 109.68855 * 292.63474 * 19 16 14 21 21 O 1.43011 * 109.69091 * 53.17596 * 19 16 14 22 22 C 1.43042 * 114.24684 * 171.78485 * 21 19 16 23 23 C 1.53437 * 109.08279 * 288.74049 * 22 21 19 24 24 C 1.51404 * 107.90261 * 47.44774 * 23 22 21 25 25 S 1.75520 * 126.26911 * 164.80403 * 24 23 22 26 26 C 1.75823 * 91.03082 * 180.02562 * 25 24 23 27 27 C 1.33066 * 109.61106 * 359.68465 * 26 25 24 28 28 C 1.34867 * 123.68560 * 344.50267 * 24 23 22 29 29 H 1.09000 * 109.47506 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46832 * 299.99839 * 1 2 3 31 31 H 1.09003 * 109.47424 * 59.99306 * 1 2 3 32 32 H 1.08997 * 109.47257 * 60.00702 * 3 2 1 33 33 H 1.09002 * 109.47100 * 300.00262 * 3 2 1 34 34 H 1.09004 * 109.47138 * 305.00738 * 4 3 2 35 35 H 1.08998 * 109.47217 * 184.99830 * 4 3 2 36 36 H 0.97000 * 120.00391 * 184.92473 * 9 8 6 37 37 H 1.08997 * 109.47072 * 209.73147 * 18 16 14 38 38 H 1.09003 * 109.46819 * 329.72651 * 18 16 14 39 39 H 1.08993 * 109.47341 * 89.72774 * 18 16 14 40 40 H 1.08995 * 109.54260 * 168.85765 * 22 21 19 41 41 H 1.09007 * 109.59933 * 48.65243 * 22 21 19 42 42 H 1.08998 * 109.76938 * 287.85575 * 23 22 21 43 43 H 1.08998 * 109.82419 * 167.07775 * 23 22 21 44 44 H 1.07998 * 125.18825 * 179.89101 * 26 25 24 45 45 H 1.07999 * 122.17861 * 180.25182 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0968 -0.7986 -1.3371 7 1 3.2436 -1.4300 -1.1376 8 6 5.3174 -1.3677 -1.6792 9 7 6.4283 -0.6835 -1.5227 10 14 5.3791 -3.1056 -2.3615 11 1 5.2671 -3.0605 -3.8416 12 1 6.6664 -3.7411 -1.9816 13 1 4.2530 -3.8966 -1.8037 14 6 4.2615 1.3337 -2.3219 15 8 4.0807 2.5321 -2.2724 16 6 4.8057 0.7051 -3.5787 17 1 5.5462 -0.0503 -3.3158 18 6 3.6630 0.0500 -4.3573 19 6 5.4614 1.7823 -4.4451 20 1 4.7000 2.4676 -4.8178 21 8 6.4224 2.5047 -3.6706 22 6 7.2263 3.4121 -4.4298 23 6 8.2040 2.6097 -5.2985 24 6 7.4209 1.5137 -5.9897 25 16 7.9597 0.5585 -7.3601 26 6 6.4452 -0.3346 -7.3735 27 6 5.6590 0.1046 -6.3940 28 6 6.1830 1.1296 -5.6166 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.6887 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5681 0.8409 35 1 3.9785 2.1765 0.0889 36 1 7.2721 -1.0523 -1.8273 37 1 4.0474 -0.8013 -4.9191 38 1 2.8970 -0.2904 -3.6606 39 1 3.2307 0.7750 -5.0468 40 1 7.7857 4.0576 -3.7528 41 1 6.5865 4.0209 -5.0686 42 1 8.9790 2.1696 -4.6710 43 1 8.6592 3.2632 -6.0427 44 1 6.1932 -1.1220 -8.0684 45 1 4.6773 -0.3087 -6.2152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457200194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -89.978151 kcal Electronic energy + Delta-G solvation = -29392.783848 eV Core-core repulsion = 25502.432437 eV Total energy + Delta-G solvation = -3890.351411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31470 -40.07075 -38.53903 -37.46631 -36.36073 -35.08597 -33.63891 -32.72810 -30.69783 -29.80427 -27.25326 -26.59392 -26.15443 -25.70452 -24.35271 -22.93183 -22.37359 -20.90666 -19.38255 -18.71127 -18.19196 -17.63124 -17.48361 -17.22222 -16.81836 -16.49358 -16.30952 -15.80912 -15.76812 -15.56280 -15.45960 -14.83848 -14.64750 -14.35971 -14.14704 -13.88317 -13.70643 -13.42537 -13.17854 -13.07294 -12.98896 -12.88111 -12.83752 -12.67439 -12.59666 -12.50114 -12.12610 -12.02741 -11.94139 -11.84178 -11.74298 -11.53733 -10.57416 -10.51926 -10.47081 -9.94809 -9.48589 -9.23713 -9.07767 -8.18721 -6.12321 0.01825 0.67856 1.01765 1.44061 1.47734 1.56906 1.68632 2.26437 2.38793 2.93159 2.98135 3.08588 3.15341 3.70262 3.77730 3.98116 4.18844 4.22290 4.23994 4.28052 4.30462 4.39401 4.43809 4.51363 4.58747 4.59697 4.59778 4.64996 4.73963 4.78144 4.80828 4.84045 4.87640 4.95274 5.06572 5.09721 5.16771 5.34985 5.41097 5.51768 5.56062 5.63210 6.21731 6.39215 6.42273 6.82334 7.11886 7.78458 8.21757 8.81062 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013491 B = 0.004676 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.885699 B = 5986.032384 C = 6817.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.068 3.932 4 C 0.110 3.890 5 N -0.456 5.456 6 C -0.336 4.336 7 H 0.081 0.919 8 C 0.023 3.977 9 N -0.878 5.878 10 Si 0.942 3.058 11 H -0.257 1.257 12 H -0.290 1.290 13 H -0.259 1.259 14 C 0.518 3.482 15 O -0.630 6.630 16 C -0.093 4.093 17 H 0.110 0.890 18 C -0.128 4.128 19 C 0.181 3.819 20 H 0.055 0.945 21 O -0.385 6.385 22 C 0.057 3.943 23 C -0.075 4.075 24 C -0.196 4.196 25 S 0.126 5.874 26 C -0.213 4.213 27 C -0.150 4.150 28 C -0.149 4.149 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.265 0.735 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.194 0.806 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 1.256 -9.998 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.010 4.010 4 C -0.013 4.013 5 N -0.176 5.176 6 C -0.464 4.464 7 H 0.099 0.901 8 C -0.181 4.181 9 N -0.514 5.514 10 Si 0.766 3.234 11 H -0.181 1.181 12 H -0.216 1.216 13 H -0.183 1.183 14 C 0.308 3.692 15 O -0.517 6.517 16 C -0.115 4.115 17 H 0.128 0.872 18 C -0.185 4.185 19 C 0.121 3.879 20 H 0.072 0.928 21 O -0.304 6.304 22 C -0.022 4.022 23 C -0.114 4.114 24 C -0.313 4.313 25 S 0.391 5.609 26 C -0.348 4.348 27 C -0.179 4.179 28 C -0.162 4.162 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.212 0.788 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.287 1.513 -10.601 10.713 hybrid contribution -1.129 -0.420 0.779 1.434 sum -0.842 1.093 -9.823 9.919 Atomic orbital electron populations 1.22879 0.80438 1.03410 1.00267 1.88010 1.20662 1.27854 1.95354 1.22776 0.93869 0.84646 0.99721 1.21466 0.92774 0.97796 0.89285 1.43297 1.60382 1.06412 1.07482 1.19342 0.95032 0.81009 1.51003 0.90093 1.26167 0.94326 1.01425 0.96156 1.70204 0.98421 1.41361 1.41393 0.85702 0.77705 0.79866 0.80146 1.18146 1.21581 1.18308 1.20602 0.77344 0.85597 0.85625 1.90441 1.59412 1.16914 1.84907 1.21264 0.99546 0.98008 0.92643 0.87230 1.21823 0.96964 1.00269 0.99459 1.20726 0.88557 0.91177 0.87444 0.92775 1.88154 1.50496 1.56670 1.35033 1.22804 0.92696 0.91343 0.95310 1.20995 0.97327 0.94494 0.98582 1.25028 0.98733 1.05040 1.02547 1.83580 1.18211 1.30773 1.28303 1.25794 0.97114 1.06951 1.04934 1.20562 1.03511 0.97837 0.95980 1.20331 0.96193 0.99972 0.99707 0.88694 0.92858 0.94392 0.91104 0.94977 0.91609 0.92023 0.92491 0.90527 0.92022 0.91748 0.87240 0.92489 0.89923 0.86760 0.78844 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -15.57 9.77 -148.98 -1.46 -17.02 16 3 C 0.07 2.64 6.28 71.98 0.45 3.09 16 4 C 0.11 5.16 5.77 86.38 0.50 5.66 16 5 N -0.46 -23.66 2.35 -635.51 -1.49 -25.15 16 6 C -0.34 -17.40 7.34 84.04 0.62 -16.78 16 7 H 0.08 4.25 7.40 -2.91 -0.02 4.22 16 8 C 0.02 1.19 3.30 84.93 0.28 1.47 16 9 N -0.88 -48.46 12.00 21.66 0.26 -48.20 16 10 Si 0.94 39.99 29.61 68.60 2.03 42.02 16 11 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 12 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 14 C 0.52 27.24 5.97 87.65 0.52 27.76 16 15 O -0.63 -35.40 15.25 12.09 0.18 -35.22 16 16 C -0.09 -4.33 1.59 -11.54 -0.02 -4.35 16 17 H 0.11 5.62 4.30 -2.38 -0.01 5.61 16 18 C -0.13 -4.95 7.57 71.98 0.55 -4.40 16 19 C 0.18 7.76 2.01 30.36 0.06 7.83 16 20 H 0.05 2.35 7.93 -2.38 -0.02 2.33 16 21 O -0.38 -17.59 9.31 -133.81 -1.25 -18.83 16 22 C 0.06 1.87 6.83 72.13 0.49 2.36 16 23 C -0.07 -2.13 6.55 30.22 0.20 -1.93 16 24 C -0.20 -6.30 6.44 25.13 0.16 -6.14 16 25 S 0.13 3.19 23.32 -56.49 -1.32 1.87 16 26 C -0.21 -5.50 11.21 66.66 0.75 -4.75 16 27 C -0.15 -4.71 8.98 21.27 0.19 -4.52 16 28 C -0.15 -5.43 5.44 -19.97 -0.11 -5.54 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 3.08 8.04 -2.38 -0.02 3.07 16 35 H 0.06 2.96 7.48 -2.39 -0.02 2.95 16 36 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 37 H 0.08 2.64 5.82 -2.39 -0.01 2.63 16 38 H 0.06 2.52 7.09 -2.39 -0.02 2.51 16 39 H 0.06 2.20 7.66 -2.39 -0.02 2.18 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.06 1.74 8.09 -2.38 -0.02 1.72 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.19 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.16 4.69 4.49 -2.91 -0.01 4.68 16 Total: -1.00 -68.98 369.03 3.86 -65.12 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 1.00 Total: 33.67 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 5.89 Total: 1.74 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -1.23 Total: -73.35 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -2.52 Total: -71.07 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.32 Total: 1.87 kcal Total: -68.98 3.86 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.855 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds