Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81404 * 109.46946 * 2 1 4 4 O 1.42098 * 110.54122 * 291.62548 * 3 2 1 5 5 O 1.42102 * 110.54223 * 68.37613 * 3 2 1 6 6 C 1.76200 * 104.45035 * 180.02562 * 3 2 1 7 7 C 1.37974 * 120.07631 * 114.99721 * 6 3 2 8 8 C 1.38337 * 120.14566 * 180.02562 * 7 6 3 9 9 C 1.38382 * 120.29267 * 0.02562 * 8 7 6 10 10 C 1.37941 * 120.14502 * 0.02562 * 9 8 7 11 11 C 1.39565 * 120.06918 * 294.72705 * 6 3 2 12 12 C 1.47843 * 120.14634 * 359.97438 * 11 6 3 13 13 O 1.21553 * 119.99919 * 359.97438 * 12 11 6 14 14 N 1.34770 * 120.00238 * 180.02562 * 12 11 6 15 15 C 1.46497 * 120.00584 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47505 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.46888 * 299.99655 * 16 15 14 18 18 C 1.52992 * 109.47225 * 60.00155 * 16 15 14 19 19 C 1.50699 * 109.46934 * 179.97438 * 16 15 14 20 20 H 1.08002 * 120.00190 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99794 * 179.97438 * 19 16 15 22 22 N 1.31518 * 120.00355 * 359.97438 * 21 19 16 23 23 Si 1.86804 * 119.99902 * 180.02562 * 21 19 16 24 24 H 1.48495 * 109.47462 * 90.00214 * 23 21 19 25 25 H 1.48505 * 109.46840 * 209.99916 * 23 21 19 26 26 H 1.48501 * 109.47236 * 329.99737 * 23 21 19 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99756 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99928 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00064 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00244 * 2 1 3 32 32 H 1.08002 * 119.92633 * 0.02787 * 7 6 3 33 33 H 1.07999 * 119.85740 * 179.97438 * 8 7 6 34 34 H 1.08000 * 119.93038 * 180.02562 * 9 8 7 35 35 H 1.08004 * 120.07213 * 179.97438 * 10 9 8 36 36 H 0.97008 * 119.99863 * 359.97438 * 14 12 11 37 37 H 1.09008 * 109.47250 * 300.00193 * 15 14 12 38 38 H 1.09009 * 109.46940 * 59.99208 * 15 14 12 39 39 H 1.09004 * 109.46936 * 60.00446 * 17 16 15 40 40 H 1.09008 * 109.46878 * 180.02562 * 17 16 15 41 41 H 1.08998 * 109.47363 * 299.99938 * 17 16 15 42 42 H 1.08998 * 109.47377 * 59.99855 * 18 16 15 43 43 H 1.08998 * 109.47265 * 180.02562 * 18 16 15 44 44 H 1.09004 * 109.47119 * 299.99873 * 18 16 15 45 45 H 0.96992 * 120.00434 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8385 2.3438 -1.2370 5 8 1.8385 2.3439 1.2370 6 6 3.8899 1.5562 -0.0008 7 6 4.6224 1.9984 -1.0831 8 6 6.0005 1.8776 -1.0855 9 6 6.6535 1.3127 -0.0041 10 6 5.9329 0.8655 1.0839 11 6 4.5427 0.9915 1.0960 12 6 3.7647 0.5214 2.2619 13 8 2.5538 0.6267 2.2670 14 7 4.3982 -0.0229 3.3197 15 6 3.6274 -0.4882 4.4753 16 6 4.5801 -1.0589 5.5276 17 6 5.3585 -2.2318 4.9281 18 6 5.5595 0.0290 5.9725 19 6 3.7872 -1.5370 6.7165 20 1 2.7112 -1.4434 6.7210 21 6 4.4352 -2.0947 7.7982 22 7 5.7453 -2.2100 7.7922 23 14 3.4522 -2.6879 9.2718 24 1 3.0787 -4.1118 9.0769 25 1 4.2747 -2.5557 10.5011 26 1 2.2219 -1.8677 9.4088 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.1187 2.4400 -1.9304 33 1 6.5692 2.2250 -1.9353 34 1 7.7296 1.2216 -0.0120 35 1 6.4438 0.4244 1.9270 36 1 5.3646 -0.1066 3.3158 37 1 3.0724 0.3473 4.9021 38 1 2.9298 -1.2636 4.1584 39 1 5.9321 -1.8856 4.0683 40 1 6.0370 -2.6387 5.6780 41 1 4.6607 -3.0069 4.6112 42 1 5.0049 0.8646 6.3995 43 1 6.2385 -0.3777 6.7218 44 1 6.1331 0.3752 5.1126 45 1 6.2012 -2.6020 8.5533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -71.026466 kcal Electronic energy + Delta-G solvation = -28370.481492 eV Core-core repulsion = 24480.951888 eV Total energy + Delta-G solvation = -3889.529604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.38042 -38.54389 -36.96151 -36.32381 -35.61360 -33.69330 -32.98886 -31.78164 -31.53788 -30.59597 -25.98996 -25.81512 -25.25394 -24.20702 -23.66069 -22.96608 -20.58462 -19.25725 -18.71854 -18.24589 -17.12972 -16.17603 -16.06871 -15.98367 -15.67269 -15.24335 -15.21182 -14.83589 -14.61040 -14.46752 -14.01228 -13.44090 -13.34963 -13.05836 -12.97990 -12.77403 -12.55811 -12.35290 -12.28944 -11.93228 -11.79799 -11.62237 -11.53423 -11.27843 -11.26996 -10.91577 -10.84063 -10.72942 -10.46057 -10.29923 -10.25692 -9.78151 -9.72000 -9.62904 -9.39075 -9.32038 -8.87072 -8.56466 -8.40473 -6.07829 -4.17979 0.16144 0.45163 0.81624 2.73150 3.00989 3.25203 3.32187 3.33508 3.39695 3.51341 3.95129 4.29547 4.35759 4.53194 4.58062 4.61421 4.73894 4.87478 5.02804 5.19407 5.21575 5.23489 5.29494 5.50488 5.61426 5.74481 5.81697 5.88837 5.93757 5.99699 6.10763 6.22999 6.39984 6.45530 6.65268 6.71786 6.81182 6.85473 6.93354 7.26100 7.47099 7.62848 7.77094 7.92985 8.05109 8.27925 8.38424 8.82451 9.48304 10.93712 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016398 B = 0.003353 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.066113 B = 8347.754683 C = 9576.959399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.602 4.602 3 S 2.509 3.491 4 O -0.962 6.962 5 O -0.903 6.903 6 C -0.616 4.616 7 C -0.033 4.033 8 C -0.122 4.122 9 C -0.075 4.075 10 C -0.107 4.107 11 C -0.037 4.037 12 C 0.522 3.478 13 O -0.519 6.519 14 N -0.697 5.697 15 C 0.128 3.872 16 C 0.055 3.945 17 C -0.132 4.132 18 C -0.132 4.132 19 C -0.506 4.506 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.886 5.886 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.155 0.845 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.399 0.601 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.004 0.996 40 H 0.087 0.913 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.087 0.913 44 H 0.004 0.996 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 4.016 -18.242 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.732 4.732 3 S 2.687 3.313 4 O -0.959 6.959 5 O -0.900 6.900 6 C -0.700 4.700 7 C -0.052 4.052 8 C -0.141 4.141 9 C -0.093 4.093 10 C -0.126 4.126 11 C -0.041 4.041 12 C 0.308 3.692 13 O -0.400 6.400 14 N -0.346 5.346 15 C 0.006 3.994 16 C 0.054 3.946 17 C -0.189 4.189 18 C -0.190 4.190 19 C -0.545 4.545 20 H 0.077 0.923 21 C -0.134 4.134 22 N -0.525 5.525 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.198 1.198 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.173 0.827 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.105 0.895 44 H 0.023 0.977 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.179 4.767 -18.049 18.668 hybrid contribution 0.914 -1.091 0.853 1.660 sum 1.093 3.676 -17.195 17.618 Atomic orbital electron populations 1.21455 0.90617 1.04743 1.03148 1.30329 1.06948 1.23819 1.12114 1.05235 0.73859 0.78003 0.74237 1.93505 1.83252 1.73073 1.46101 1.93643 1.81760 1.71981 1.42641 1.30951 1.27580 1.11121 1.00396 1.21030 0.94399 0.93661 0.96088 1.21491 0.94549 0.99138 0.98926 1.21432 1.00594 0.94557 0.92683 1.21528 0.92886 0.99076 0.99137 1.19815 0.94507 0.96633 0.93107 1.18419 0.87857 0.79516 0.83440 1.90809 1.13063 1.55303 1.80799 1.46202 1.11427 1.59375 1.17641 1.21905 0.94850 0.98414 0.84238 1.18382 0.92229 0.92254 0.91713 1.21852 1.00054 0.98839 0.98188 1.21848 0.99896 0.97749 0.99482 1.20958 0.93251 1.39929 1.00335 0.92295 1.24874 0.94910 0.95417 0.98249 1.69791 1.07138 1.44774 1.30751 0.86558 0.80095 0.79111 0.82042 1.20720 1.21261 1.19831 0.90147 0.90540 0.91637 0.82733 0.86285 0.83264 0.84639 0.84531 0.84457 0.76392 0.91767 0.92058 0.97691 0.89446 0.95314 0.95190 0.89477 0.97696 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.92 37.16 0.37 -1.17 16 2 C -0.60 -7.20 6.05 37.16 0.22 -6.98 16 3 S 2.51 36.39 4.50 -107.50 -0.48 35.90 16 4 O -0.96 -14.61 16.74 -57.54 -0.96 -15.58 16 5 O -0.90 -16.91 14.81 -67.51 -1.00 -17.91 16 6 C -0.62 -8.26 5.61 -39.18 -0.22 -8.48 16 7 C -0.03 -0.36 9.49 -39.64 -0.38 -0.74 16 8 C -0.12 -1.07 10.04 -39.49 -0.40 -1.47 16 9 C -0.07 -0.66 10.03 -39.64 -0.40 -1.06 16 10 C -0.11 -1.19 9.54 -39.18 -0.37 -1.57 16 11 C -0.04 -0.51 5.86 -104.97 -0.62 -1.13 16 12 C 0.52 8.73 7.36 -12.33 -0.09 8.64 16 13 O -0.52 -9.69 9.08 -19.83 -0.18 -9.87 16 14 N -0.70 -11.74 4.91 -61.25 -0.30 -12.04 16 15 C 0.13 2.57 4.50 -4.05 -0.02 2.55 16 16 C 0.05 1.22 0.50 -155.67 -0.08 1.14 16 17 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 18 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 19 C -0.51 -12.81 8.01 -34.44 -0.28 -13.09 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 22 N -0.89 -22.92 9.35 55.43 0.52 -22.41 16 23 Si 0.89 20.29 29.54 -169.99 -5.02 15.26 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.15 2.06 5.45 -51.92 -0.28 1.78 16 31 H 0.12 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.15 1.42 7.21 -52.49 -0.38 1.04 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 1.32 6.41 -52.48 -0.34 0.99 16 36 H 0.40 5.95 4.20 -40.82 -0.17 5.78 16 37 H 0.06 1.38 8.14 -51.92 -0.42 0.96 16 38 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 39 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 40 H 0.09 2.08 6.07 -51.92 -0.32 1.77 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 2.10 6.07 -51.93 -0.32 1.79 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -31.54 364.91 -9.95 -41.49 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.28 Total: 6.46 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -1.74 Total: -26.81 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.22 Total: -34.45 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -2.14 Total: -43.36 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 36.39 SS G_CDS: -0.48 Total: 35.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.54 -9.95 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds