Wall clock time and date at job start Sat Apr 11 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99807 * 2 1 3 5 5 N 1.46502 * 109.46864 * 179.97438 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 S 1.81397 * 109.47174 * 239.99718 * 2 1 3 26 26 C 1.81395 * 101.92395 * 60.00203 * 25 2 1 27 27 O 1.42101 * 108.57975 * 174.48903 * 25 2 1 28 28 O 1.42098 * 108.58002 * 305.51162 * 25 2 1 29 29 H 1.08990 * 109.47570 * 300.00288 * 1 2 3 30 30 H 1.09005 * 109.46784 * 60.00503 * 1 2 3 31 31 H 1.09008 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47146 * 60.00301 * 4 2 1 33 33 H 1.08995 * 109.46642 * 299.99928 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09002 * 109.47394 * 59.99400 * 26 25 2 44 44 H 1.09001 * 109.47431 * 180.02562 * 26 25 2 45 45 H 1.09007 * 109.47051 * 299.99805 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5050 -0.7218 1.2490 6 6 4.1788 -1.3050 2.2601 7 8 3.5723 -1.8298 3.1699 8 6 5.6858 -1.3051 2.2601 9 6 6.1957 -2.0264 3.5094 10 1 5.7477 -1.5781 4.3960 11 6 5.8178 -3.4835 3.4376 12 1 5.6781 -3.9584 2.4776 13 6 5.6504 -4.2102 4.5972 14 7 5.9478 -3.6716 5.7594 15 14 5.0083 -5.9626 4.5168 16 1 4.9260 -6.5230 5.8895 17 1 3.6582 -5.9671 3.8984 18 1 5.9304 -6.7905 3.6985 19 6 7.6955 -1.8996 3.5856 20 6 8.4895 -2.4987 2.6256 21 6 9.8650 -2.3787 2.6930 22 6 10.4469 -1.6673 3.7256 23 6 9.6531 -1.0726 4.6885 24 6 8.2774 -1.1890 4.6186 25 16 2.1347 -0.8552 -1.4811 26 6 1.4230 0.1513 -2.8118 27 8 3.5496 -0.7331 -1.5284 28 8 1.5480 -2.1485 -1.5283 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6767 -1.7489 1.2493 33 1 1.6766 -0.2073 2.1392 34 1 3.9900 -0.3017 0.5215 35 1 6.0492 -0.2774 2.2597 36 1 6.0492 -1.8192 1.3703 37 1 6.3567 -2.7927 5.7963 38 1 8.0350 -3.0580 1.8211 39 1 10.4850 -2.8431 1.9405 40 1 11.5216 -1.5758 3.7799 41 1 10.1077 -0.5165 5.4950 42 1 7.6573 -0.7242 5.3708 43 1 1.7894 1.1746 -2.7292 44 1 1.7153 -0.2629 -3.7768 45 1 0.3361 0.1469 -2.7292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527252311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:46 Heat of formation + Delta-G solvation = -88.821748 kcal Electronic energy + Delta-G solvation = -27653.508520 eV Core-core repulsion = 23763.207254 eV Total energy + Delta-G solvation = -3890.301266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.27063 -38.31213 -37.28888 -36.34918 -35.95547 -34.18067 -32.79868 -31.25106 -30.06305 -29.94650 -28.95798 -26.59306 -24.66714 -23.05367 -22.54988 -21.61441 -20.27579 -19.50021 -19.00431 -17.44885 -17.04271 -16.54465 -16.31391 -16.15358 -15.70262 -15.55102 -14.94717 -14.29745 -14.15437 -14.04273 -13.68260 -13.61291 -13.57589 -13.30677 -13.07404 -12.98665 -12.64853 -12.57578 -12.29796 -12.25134 -12.22031 -12.15572 -11.81484 -11.75005 -11.41323 -11.29412 -10.85996 -10.65969 -10.54212 -10.37977 -10.07817 -9.98005 -9.62561 -9.06434 -8.74938 -8.55860 -8.22653 -8.08849 -7.58675 -6.16850 -3.85302 -0.37595 2.24103 2.29387 2.37649 3.29812 3.37068 3.46812 3.55972 3.61483 3.72659 3.77044 4.11120 4.23906 4.38218 4.61041 4.66141 4.68949 4.73588 5.00170 5.17213 5.24499 5.44343 5.50657 5.59345 5.62897 5.64066 5.68677 5.80719 5.85972 6.06976 6.16819 6.22399 6.37342 6.48059 6.70652 6.77124 6.83944 6.97802 7.25860 7.27889 7.42890 7.78595 7.90689 7.96590 8.29305 8.58400 8.97136 9.03865 9.83306 11.22663 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.003437 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.737294 B = 8143.992795 C = 9292.145142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.586 4.586 3 H 0.142 0.858 4 C 0.136 3.864 5 N -0.765 5.765 6 C 0.517 3.483 7 O -0.496 6.496 8 C -0.117 4.117 9 C 0.072 3.928 10 H 0.050 0.950 11 C -0.567 4.567 12 H 0.046 0.954 13 C 0.032 3.968 14 N -0.907 5.907 15 Si 1.059 2.941 16 H -0.284 1.284 17 H -0.288 1.288 18 H -0.290 1.290 19 C -0.032 4.032 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.130 4.130 25 S 2.417 3.583 26 C -0.661 4.661 27 O -0.931 6.931 28 O -0.927 6.927 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.403 0.597 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.271 0.729 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 12.935 -15.689 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.695 4.695 3 H 0.160 0.840 4 C 0.011 3.989 5 N -0.426 5.426 6 C 0.304 3.696 7 O -0.367 6.367 8 C -0.158 4.158 9 C 0.053 3.947 10 H 0.068 0.932 11 C -0.605 4.605 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.543 5.543 15 Si 0.888 3.112 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.217 1.217 19 C -0.033 4.033 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.144 4.144 24 C -0.148 4.148 25 S 2.597 3.403 26 C -0.810 4.810 27 O -0.928 6.928 28 O -0.924 6.924 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.241 0.759 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.988 10.486 -14.106 19.306 hybrid contribution 0.256 2.244 -1.330 2.621 sum -7.732 12.730 -15.436 21.450 Atomic orbital electron populations 1.21652 0.89069 1.04811 1.04499 1.30335 1.07583 1.13842 1.17752 0.84023 1.20950 0.82139 1.00878 0.94935 1.46600 1.05572 1.62451 1.27983 1.20897 0.90903 0.76879 0.80891 1.90751 1.69911 1.41044 1.34974 1.21688 0.90372 1.00823 1.02884 1.17882 0.86428 0.97353 0.93052 0.93202 1.21565 1.50564 0.93570 0.94792 0.93547 1.25567 0.94780 1.04639 0.92318 1.70734 1.38930 1.18536 1.26071 0.83700 0.76473 0.75307 0.75688 1.20979 1.21448 1.21679 1.20838 0.98733 0.91336 0.92389 1.20953 0.92646 0.99056 0.99716 1.21018 0.95193 1.00076 0.98512 1.20820 0.98533 1.01216 0.96496 1.20954 0.94094 1.00716 0.98590 1.21063 0.94316 1.00445 0.99022 1.08266 0.76323 0.77326 0.78386 1.30345 1.14142 1.16603 1.19864 1.93568 1.26800 1.86942 1.85445 1.93614 1.79244 1.34154 1.85427 0.89713 0.91014 0.89915 0.89906 0.89463 0.75931 0.91430 0.89784 0.91826 0.86579 0.87434 0.87614 0.87493 0.87186 0.85269 0.85155 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.94 37.16 0.33 -0.44 16 2 C -0.59 -4.46 2.88 -26.73 -0.08 -4.54 16 3 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 4 C 0.14 1.76 5.12 -4.04 -0.02 1.74 16 5 N -0.76 -12.08 5.16 -60.29 -0.31 -12.39 16 6 C 0.52 10.82 7.58 -10.99 -0.08 10.73 16 7 O -0.50 -12.63 15.02 5.55 0.08 -12.54 16 8 C -0.12 -2.42 4.95 -27.88 -0.14 -2.56 16 9 C 0.07 1.78 1.23 -92.92 -0.11 1.67 16 10 H 0.05 1.37 6.59 -51.93 -0.34 1.03 16 11 C -0.57 -15.94 6.35 -34.44 -0.22 -16.16 16 12 H 0.05 1.32 7.82 -52.48 -0.41 0.91 16 13 C 0.03 0.95 5.45 -17.83 -0.10 0.86 16 14 N -0.91 -28.18 13.56 55.43 0.75 -27.42 16 15 Si 1.06 26.99 29.91 -169.99 -5.08 21.90 16 16 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.03 -0.74 4.53 -104.62 -0.47 -1.21 16 20 C -0.11 -2.25 8.90 -39.58 -0.35 -2.60 16 21 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 22 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 23 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 24 C -0.13 -2.78 9.18 -39.58 -0.36 -3.14 16 25 S 2.42 22.09 4.76 -107.50 -0.51 21.58 16 26 C -0.66 -2.79 10.17 101.05 1.03 -1.76 16 27 O -0.93 -11.60 15.82 -57.83 -0.91 -12.51 16 28 O -0.93 -12.38 17.91 -57.83 -1.04 -13.42 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.17 6.56 -51.93 -0.34 -0.17 16 31 H 0.08 0.52 8.06 -51.92 -0.42 0.10 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.40 5.49 6.30 -40.82 -0.26 5.23 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.67 7.96 -51.93 -0.41 1.25 16 37 H 0.27 8.25 6.24 -40.82 -0.25 8.00 16 38 H 0.12 2.44 7.85 -52.48 -0.41 2.03 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.11 2.30 7.95 -52.49 -0.42 1.89 16 43 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 44 H 0.13 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.13 0.29 6.87 -51.92 -0.36 -0.07 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -39.48 382.23 -9.68 -49.16 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.65 Total: 6.00 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -1.77 Total: -26.10 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.44 Total: -39.82 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.87 Total: -38.48 kcal Atomic # 14 Polarization: 26.99 SS G_CDS: -5.08 Total: 21.90 kcal Atomic # 16 Polarization: 22.09 SS G_CDS: -0.51 Total: 21.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.48 -9.68 -49.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.661 kcal (2) G-P(sol) polarization free energy of solvation -39.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds