Wall clock time and date at job start Sat Apr 11 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46969 * 2 1 4 4 C 1.53005 * 109.46912 * 119.99807 * 2 1 3 5 5 N 1.46502 * 109.46864 * 179.97438 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 S 1.81397 * 109.47174 * 239.99718 * 2 1 3 26 26 C 1.81395 * 101.92395 * 60.00203 * 25 2 1 27 27 O 1.42101 * 108.57975 * 174.48903 * 25 2 1 28 28 O 1.42098 * 108.58002 * 305.51162 * 25 2 1 29 29 H 1.08990 * 109.47570 * 300.00288 * 1 2 3 30 30 H 1.09005 * 109.46784 * 60.00503 * 1 2 3 31 31 H 1.09008 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47146 * 60.00301 * 4 2 1 33 33 H 1.08995 * 109.46642 * 299.99928 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09002 * 109.47394 * 59.99400 * 26 25 2 44 44 H 1.09001 * 109.47431 * 180.02562 * 26 25 2 45 45 H 1.09007 * 109.47051 * 299.99805 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5050 -0.7218 1.2490 6 6 4.1788 -1.3050 2.2601 7 8 3.5723 -1.8298 3.1699 8 6 5.6858 -1.3051 2.2601 9 6 6.1957 -2.0264 3.5094 10 1 5.7477 -1.5781 4.3960 11 6 5.8178 -3.4835 3.4376 12 1 5.6781 -3.9584 2.4776 13 6 5.6504 -4.2102 4.5972 14 7 5.9478 -3.6716 5.7594 15 14 5.0083 -5.9626 4.5168 16 1 4.9260 -6.5230 5.8895 17 1 3.6582 -5.9671 3.8984 18 1 5.9304 -6.7905 3.6985 19 6 7.6955 -1.8996 3.5856 20 6 8.4895 -2.4987 2.6256 21 6 9.8650 -2.3787 2.6930 22 6 10.4469 -1.6673 3.7256 23 6 9.6531 -1.0726 4.6885 24 6 8.2774 -1.1890 4.6186 25 16 2.1347 -0.8552 -1.4811 26 6 1.4230 0.1513 -2.8118 27 8 3.5496 -0.7331 -1.5284 28 8 1.5480 -2.1485 -1.5283 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6767 -1.7489 1.2493 33 1 1.6766 -0.2073 2.1392 34 1 3.9900 -0.3017 0.5215 35 1 6.0492 -0.2774 2.2597 36 1 6.0492 -1.8192 1.3703 37 1 6.3567 -2.7927 5.7963 38 1 8.0350 -3.0580 1.8211 39 1 10.4850 -2.8431 1.9405 40 1 11.5216 -1.5758 3.7799 41 1 10.1077 -0.5165 5.4950 42 1 7.6573 -0.7242 5.3708 43 1 1.7894 1.1746 -2.7292 44 1 1.7153 -0.2629 -3.7768 45 1 0.3361 0.1469 -2.7292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527252311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:45 Heat of formation + Delta-G solvation = -118.718370 kcal Electronic energy + Delta-G solvation = -27654.804934 eV Core-core repulsion = 23763.207254 eV Total energy + Delta-G solvation = -3891.597681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.90652 -39.88325 -38.10646 -37.34842 -36.93824 -36.04398 -33.97406 -33.21510 -31.61781 -30.74553 -30.18217 -27.83630 -26.40484 -24.60747 -23.60970 -23.19351 -21.87737 -21.16932 -19.79812 -18.88681 -18.18876 -18.08089 -17.57033 -17.18275 -16.94780 -16.58247 -16.49197 -15.79744 -15.67364 -15.62928 -15.12098 -14.80771 -14.48087 -14.26935 -14.09021 -14.00448 -13.93633 -13.77186 -13.64620 -13.50476 -13.20993 -13.16195 -13.07949 -13.05508 -12.68430 -12.64840 -12.40523 -12.09593 -11.96787 -11.94897 -11.73368 -11.52517 -11.23634 -10.86070 -10.61686 -10.39939 -10.16646 -9.64925 -9.28527 -8.46919 -6.13362 -1.02608 0.67043 0.72753 1.45735 1.55835 1.72319 1.73909 1.78115 2.15802 2.59645 2.63924 3.02512 3.09889 3.33625 3.35623 3.69222 3.99392 4.04784 4.10391 4.12486 4.23623 4.27406 4.28454 4.39429 4.43791 4.46794 4.57356 4.62971 4.67613 4.80419 4.82295 4.85172 4.97619 5.05694 5.21570 5.23901 5.37078 5.39349 5.42300 5.73728 5.80997 5.93680 6.22723 6.29406 6.38577 6.53724 6.76735 7.37243 7.60876 8.93484 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.003437 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.737294 B = 8143.992795 C = 9292.145142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.568 4.568 3 H 0.183 0.817 4 C 0.123 3.877 5 N -0.746 5.746 6 C 0.513 3.487 7 O -0.554 6.554 8 C -0.115 4.115 9 C 0.075 3.925 10 H 0.010 0.990 11 C -0.561 4.561 12 H 0.034 0.966 13 C -0.022 4.022 14 N -0.940 5.940 15 Si 1.094 2.906 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.056 4.056 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.151 4.151 25 S 2.393 3.607 26 C -0.628 4.628 27 O -0.977 6.977 28 O -0.986 6.986 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.164 0.836 44 H 0.140 0.860 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 15.209 -18.302 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.678 4.678 3 H 0.200 0.800 4 C -0.001 4.001 5 N -0.406 5.406 6 C 0.300 3.700 7 O -0.430 6.430 8 C -0.155 4.155 9 C 0.055 3.945 10 H 0.028 0.972 11 C -0.599 4.599 12 H 0.052 0.948 13 C -0.220 4.220 14 N -0.578 5.578 15 Si 0.919 3.081 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.193 1.193 19 C -0.057 4.057 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.141 4.141 24 C -0.169 4.169 25 S 2.580 3.420 26 C -0.781 4.781 27 O -0.974 6.974 28 O -0.983 6.983 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.256 0.744 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.117 0.883 43 H 0.182 0.818 44 H 0.158 0.842 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.243 12.756 -16.762 22.274 hybrid contribution 0.024 1.707 -0.645 1.825 sum -7.219 14.463 -17.407 23.755 Atomic orbital electron populations 1.21827 0.86960 1.04730 1.07129 1.30238 1.09151 1.14712 1.13658 0.79975 1.21162 0.80097 1.00528 0.98339 1.46398 1.07125 1.60516 1.26556 1.21000 0.91208 0.76586 0.81188 1.90722 1.70865 1.43964 1.37401 1.21621 0.90573 1.02155 1.01182 1.17694 0.88230 0.95473 0.93056 0.97200 1.21795 1.49073 0.95294 0.93776 0.94813 1.26694 0.95249 1.07695 0.92396 1.70810 1.41504 1.18689 1.26802 0.83241 0.76419 0.72452 0.75994 1.20851 1.21487 1.19303 1.20593 0.97297 0.93664 0.94137 1.21007 0.94156 0.99618 0.99499 1.21396 0.94131 0.99371 0.99385 1.21315 1.00598 0.99133 0.94987 1.21315 0.92816 1.00376 0.99640 1.21130 0.95932 1.01272 0.98573 1.08490 0.75682 0.77614 0.80204 1.30069 1.15543 1.16468 1.16062 1.93505 1.29767 1.87682 1.86451 1.93548 1.79642 1.38502 1.86616 0.88939 0.86542 0.91484 0.92539 0.89272 0.74401 0.88470 0.89127 0.92799 0.87341 0.84059 0.83383 0.84411 0.88343 0.81770 0.84200 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.94 71.98 0.64 -0.58 16 2 C -0.57 -7.61 2.88 30.60 0.09 -7.52 16 3 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.12 3.29 5.12 86.38 0.44 3.73 16 5 N -0.75 -24.36 5.16 -463.05 -2.39 -26.75 16 6 C 0.51 22.67 7.58 87.66 0.66 23.33 16 7 O -0.55 -30.29 15.02 -3.04 -0.05 -30.34 16 8 C -0.12 -4.97 4.95 29.85 0.15 -4.82 16 9 C 0.07 3.91 1.23 -12.28 -0.02 3.89 16 10 H 0.01 0.58 6.59 -2.39 -0.02 0.57 16 11 C -0.56 -33.20 6.35 25.60 0.16 -33.04 16 12 H 0.03 2.02 7.82 -2.91 -0.02 1.99 16 13 C -0.02 -1.33 5.45 84.65 0.46 -0.87 16 14 N -0.94 -61.35 13.56 21.44 0.29 -61.06 16 15 Si 1.09 56.44 29.91 68.60 2.05 58.49 16 16 H -0.28 -14.43 7.11 99.48 0.71 -13.72 16 17 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 C -0.06 -2.64 4.53 -19.87 -0.09 -2.74 16 20 C -0.12 -5.29 8.90 22.27 0.20 -5.09 16 21 C -0.13 -4.34 10.05 22.27 0.22 -4.11 16 22 C -0.14 -4.57 10.05 22.27 0.22 -4.35 16 23 C -0.12 -4.39 10.05 22.27 0.22 -4.17 16 24 C -0.15 -6.56 9.18 22.27 0.20 -6.36 16 25 S 2.39 41.36 4.76 -56.49 -0.27 41.09 16 26 C -0.63 -2.34 10.17 113.37 1.15 -1.19 16 27 O -0.98 -24.24 15.82 -127.37 -2.01 -26.26 16 28 O -0.99 -27.34 17.91 -127.37 -2.28 -29.62 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.12 -0.06 6.56 -2.38 -0.02 -0.08 16 31 H 0.07 0.80 8.06 -2.38 -0.02 0.78 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.42 11.39 6.30 -92.71 -0.58 10.81 16 35 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.09 3.74 7.96 -2.39 -0.02 3.72 16 37 H 0.26 16.99 6.24 -92.70 -0.58 16.41 16 38 H 0.11 4.64 7.85 -2.91 -0.02 4.62 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.10 4.38 7.95 -2.91 -0.02 4.35 16 43 H 0.16 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.14 0.48 8.14 -2.39 -0.02 0.47 16 45 H 0.16 -0.25 6.87 -2.39 -0.02 -0.27 16 Total: -1.00 -95.16 382.23 0.67 -94.48 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.60 Total: 23.83 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 4.73 Total: -43.88 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.10 Total: -87.80 kcal Atomic # 8 Polarization: -81.87 SS G_CDS: -4.34 Total: -86.21 kcal Atomic # 14 Polarization: 56.44 SS G_CDS: 2.05 Total: 58.49 kcal Atomic # 16 Polarization: 41.36 SS G_CDS: -0.27 Total: 41.09 kcal Total: -95.16 0.67 -94.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.236 kcal (2) G-P(sol) polarization free energy of solvation -95.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds