Wall clock time and date at job start Sat Apr 11 2020 05:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.47024 * 239.99657 * 2 1 3 5 5 N 1.46498 * 109.47238 * 180.02562 * 4 2 1 6 6 C 1.34776 * 120.00269 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99737 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00164 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47307 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47622 * 54.99947 * 9 8 6 11 11 C 1.50707 * 109.46863 * 294.99720 * 9 8 6 12 12 H 1.07997 * 119.99724 * 325.84417 * 11 9 8 13 13 C 1.37878 * 119.99585 * 145.84424 * 11 9 8 14 14 N 1.31509 * 120.00476 * 6.11935 * 13 11 9 15 15 Si 1.86803 * 119.99562 * 186.12153 * 13 11 9 16 16 H 1.48493 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46859 * 120.00226 * 15 13 11 18 18 H 1.48502 * 109.47045 * 239.99943 * 15 13 11 19 19 C 1.50697 * 109.47344 * 175.00236 * 9 8 6 20 20 C 1.38232 * 120.00369 * 63.46546 * 19 9 8 21 21 C 1.38242 * 120.00009 * 179.81290 * 20 19 9 22 22 C 1.38226 * 119.99854 * 0.39660 * 21 20 19 23 23 C 1.38231 * 120.00335 * 359.85614 * 22 21 20 24 24 C 1.38229 * 119.99930 * 359.95899 * 23 22 21 25 25 S 1.81404 * 109.47075 * 119.99755 * 2 1 3 26 26 C 1.81399 * 101.92262 * 305.00132 * 25 2 1 27 27 O 1.42105 * 108.57537 * 59.48764 * 25 2 1 28 28 O 1.42093 * 108.57760 * 190.50915 * 25 2 1 29 29 H 1.08992 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46857 * 60.00175 * 1 2 3 31 31 H 1.08995 * 109.46769 * 300.00510 * 1 2 3 32 32 H 1.09002 * 109.47282 * 300.00451 * 4 2 1 33 33 H 1.09002 * 109.47167 * 60.00357 * 4 2 1 34 34 H 0.97002 * 119.99675 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47244 * 300.00317 * 8 6 5 36 36 H 1.08999 * 109.47217 * 59.99629 * 8 6 5 37 37 H 0.96999 * 120.00245 * 179.97438 * 14 13 11 38 38 H 1.08001 * 120.00055 * 0.02562 * 20 19 9 39 39 H 1.08001 * 119.99784 * 180.23036 * 21 20 19 40 40 H 1.08008 * 119.99747 * 179.83730 * 22 21 20 41 41 H 1.08003 * 120.00153 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99862 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47271 * 59.99842 * 26 25 2 44 44 H 1.08993 * 109.47164 * 179.97438 * 26 25 2 45 45 H 1.09006 * 109.46985 * 299.99878 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7219 -1.2489 6 6 4.1789 -1.3061 -2.2594 7 8 3.5724 -1.8309 -3.1692 8 6 5.6859 -1.3072 -2.2588 9 6 6.1959 -2.0283 -3.5080 10 1 5.7620 -1.5684 -4.3958 11 6 5.7962 -3.4802 -3.4482 12 1 5.7553 -3.9902 -2.4971 13 6 5.4827 -4.1572 -4.6077 14 7 5.6477 -3.5740 -5.7748 15 14 4.8236 -5.9030 -4.5208 16 1 4.7308 -6.3268 -3.1006 17 1 3.4755 -5.9545 -5.1414 18 1 5.7401 -6.8150 -5.2512 19 6 7.6978 -1.9231 -3.5709 20 6 8.4733 -2.5029 -2.5843 21 6 9.8512 -2.4097 -2.6441 22 6 10.4533 -1.7296 -3.6860 23 6 9.6778 -1.1453 -4.6698 24 6 8.3001 -1.2418 -4.6121 25 16 2.1347 -0.8551 1.4812 26 6 1.2998 0.0577 2.8080 27 8 1.6408 -2.1875 1.4680 28 8 3.5342 -0.6350 1.5914 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.9900 -0.3024 -0.5211 35 1 6.0499 -0.2797 -2.2588 36 1 6.0485 -1.8211 -1.3686 37 1 5.4275 -4.0505 -6.5905 38 1 8.0027 -3.0317 -1.7686 39 1 10.4572 -2.8659 -1.8752 40 1 11.5299 -1.6545 -3.7313 41 1 10.1482 -0.6136 -5.4837 42 1 7.6941 -0.7849 -5.3806 43 1 0.2202 -0.0209 2.6795 44 1 1.5821 -0.3640 3.7725 45 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527252315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:53 Heat of formation + Delta-G solvation = -85.333074 kcal Electronic energy + Delta-G solvation = -27609.549718 eV Core-core repulsion = 23719.399733 eV Total energy + Delta-G solvation = -3890.149985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.15756 -38.17082 -37.25082 -36.30084 -35.90280 -33.89458 -32.76800 -31.36998 -29.95011 -29.90751 -28.82724 -26.62934 -25.05169 -23.01738 -22.41734 -21.54537 -20.15856 -19.27686 -18.91858 -17.41166 -16.83104 -16.39208 -16.26339 -16.10325 -15.61402 -15.49157 -14.73993 -14.39660 -14.09839 -14.04574 -13.80022 -13.64439 -13.58174 -13.23634 -12.94463 -12.85305 -12.57702 -12.45836 -12.26778 -12.24217 -12.17912 -11.84885 -11.78420 -11.57469 -11.52437 -11.27165 -10.81774 -10.63225 -10.51689 -10.45924 -10.18321 -9.99169 -9.37874 -9.01862 -8.85237 -8.66841 -8.27259 -7.97360 -7.53580 -5.86928 -3.85748 -0.34063 2.36048 2.40820 2.41706 3.33660 3.42305 3.43392 3.50332 3.54780 3.56716 3.77431 4.14400 4.27523 4.40941 4.59121 4.63964 4.72136 4.82490 5.02471 5.19147 5.26939 5.46177 5.55970 5.61444 5.64777 5.72559 5.79993 5.89640 5.94409 6.18527 6.29941 6.36912 6.48370 6.61704 6.79117 6.88856 6.98063 7.11562 7.37926 7.51894 7.59457 7.93942 8.02290 8.03490 8.13151 8.46100 9.07086 9.14820 9.76228 11.23312 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.003478 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.137239 B = 8048.233583 C = 9252.260085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.586 4.586 3 H 0.142 0.858 4 C 0.136 3.864 5 N -0.768 5.768 6 C 0.517 3.483 7 O -0.492 6.492 8 C -0.124 4.124 9 C 0.079 3.921 10 H 0.072 0.928 11 C -0.491 4.491 12 H 0.052 0.948 13 C 0.078 3.922 14 N -0.882 5.882 15 Si 0.886 3.114 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.288 1.288 19 C -0.020 4.020 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.119 4.119 25 S 2.416 3.584 26 C -0.661 4.661 27 O -0.927 6.927 28 O -0.932 6.932 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.402 0.598 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 12.583 14.938 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.695 4.695 3 H 0.160 0.840 4 C 0.011 3.989 5 N -0.429 5.429 6 C 0.304 3.696 7 O -0.362 6.362 8 C -0.164 4.164 9 C 0.060 3.940 10 H 0.090 0.910 11 C -0.529 4.529 12 H 0.070 0.930 13 C -0.125 4.125 14 N -0.520 5.520 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.214 1.214 19 C -0.021 4.021 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.147 4.147 24 C -0.137 4.137 25 S 2.596 3.404 26 C -0.810 4.810 27 O -0.924 6.924 28 O -0.928 6.928 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.421 11.428 14.100 19.608 hybrid contribution -0.651 -0.108 0.281 0.717 sum -8.071 11.320 14.380 20.002 Atomic orbital electron populations 1.21676 0.89190 1.04703 1.04568 1.30338 1.07474 1.13891 1.17779 0.83962 1.20949 0.82233 1.00873 0.94842 1.46636 1.05526 1.62614 1.28109 1.20946 0.90985 0.76888 0.80815 1.90759 1.69876 1.40859 1.34720 1.21827 0.90264 1.01035 1.03297 1.17857 0.86266 0.96651 0.93248 0.90954 1.20761 1.44986 0.94234 0.92890 0.92968 1.24800 0.94562 0.97577 0.95519 1.69922 1.47716 1.37139 0.97178 0.86643 0.78717 0.85155 0.78071 1.19834 1.21049 1.21411 1.20720 0.98617 0.90856 0.91873 1.20974 0.92799 0.99799 0.99725 1.20974 0.95110 1.00438 0.98441 1.20784 0.98402 1.01766 0.96470 1.20969 0.94348 1.00941 0.98434 1.21077 0.93858 1.00037 0.98737 1.08277 0.76490 0.77194 0.78397 1.30356 1.15115 1.15730 1.19809 1.93618 1.81809 1.31472 1.85498 1.93575 1.27560 1.86486 1.85219 0.90039 0.89698 0.90945 0.89858 0.89483 0.76150 0.91427 0.90088 0.93267 0.86806 0.87668 0.87857 0.87699 0.86875 0.85181 0.85194 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 8.90 37.16 0.33 -0.45 16 2 C -0.59 -4.53 2.91 -26.73 -0.08 -4.61 16 3 H 0.14 0.68 8.14 -51.92 -0.42 0.26 16 4 C 0.14 1.77 5.11 -4.04 -0.02 1.75 16 5 N -0.77 -12.17 5.22 -60.30 -0.31 -12.49 16 6 C 0.52 10.78 7.58 -10.99 -0.08 10.69 16 7 O -0.49 -12.48 14.98 5.56 0.08 -12.39 16 8 C -0.12 -2.54 4.95 -27.89 -0.14 -2.68 16 9 C 0.08 1.94 1.67 -92.92 -0.16 1.79 16 10 H 0.07 2.02 6.98 -51.93 -0.36 1.65 16 11 C -0.49 -13.64 6.37 -34.44 -0.22 -13.86 16 12 H 0.05 1.46 7.82 -52.49 -0.41 1.05 16 13 C 0.08 2.27 5.45 -17.82 -0.10 2.17 16 14 N -0.88 -26.40 12.87 55.43 0.71 -25.69 16 15 Si 0.89 22.94 29.54 -169.99 -5.02 17.92 16 16 H -0.27 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 20 C -0.11 -2.42 8.86 -39.58 -0.35 -2.77 16 21 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 22 C -0.16 -2.81 10.05 -39.59 -0.40 -3.20 16 23 C -0.13 -2.44 10.05 -39.59 -0.40 -2.84 16 24 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 25 S 2.42 22.47 4.69 -107.50 -0.50 21.96 16 26 C -0.66 -2.89 10.01 101.05 1.01 -1.88 16 27 O -0.93 -12.64 18.06 -57.83 -1.04 -13.68 16 28 O -0.93 -11.63 16.06 -57.83 -0.93 -12.56 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.17 6.39 -51.93 -0.33 -0.16 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 5.51 6.40 -40.82 -0.26 5.24 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.11 2.33 7.76 -52.49 -0.41 1.93 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.11 2.46 7.95 -52.48 -0.42 2.04 16 43 H 0.13 0.31 6.78 -51.92 -0.35 -0.04 16 44 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -38.33 384.62 -9.83 -48.16 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.73 Total: 5.61 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.87 Total: -22.64 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.18 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.89 Total: -38.64 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 22.47 SS G_CDS: -0.50 Total: 21.96 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.33 -9.83 -48.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.170 kcal (2) G-P(sol) polarization free energy of solvation -38.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds