Wall clock time and date at job start Sat Apr 11 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.47024 * 239.99657 * 2 1 3 5 5 N 1.46498 * 109.47238 * 180.02562 * 4 2 1 6 6 C 1.34776 * 120.00269 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99737 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00164 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47307 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.47622 * 54.99947 * 9 8 6 11 11 C 1.50707 * 109.46863 * 294.99720 * 9 8 6 12 12 H 1.07997 * 119.99724 * 325.84417 * 11 9 8 13 13 C 1.37878 * 119.99585 * 145.84424 * 11 9 8 14 14 N 1.31509 * 120.00476 * 6.11935 * 13 11 9 15 15 Si 1.86803 * 119.99562 * 186.12153 * 13 11 9 16 16 H 1.48493 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46859 * 120.00226 * 15 13 11 18 18 H 1.48502 * 109.47045 * 239.99943 * 15 13 11 19 19 C 1.50697 * 109.47344 * 175.00236 * 9 8 6 20 20 C 1.38232 * 120.00369 * 63.46546 * 19 9 8 21 21 C 1.38242 * 120.00009 * 179.81290 * 20 19 9 22 22 C 1.38226 * 119.99854 * 0.39660 * 21 20 19 23 23 C 1.38231 * 120.00335 * 359.85614 * 22 21 20 24 24 C 1.38229 * 119.99930 * 359.95899 * 23 22 21 25 25 S 1.81404 * 109.47075 * 119.99755 * 2 1 3 26 26 C 1.81399 * 101.92262 * 305.00132 * 25 2 1 27 27 O 1.42105 * 108.57537 * 59.48764 * 25 2 1 28 28 O 1.42093 * 108.57760 * 190.50915 * 25 2 1 29 29 H 1.08992 * 109.47458 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46857 * 60.00175 * 1 2 3 31 31 H 1.08995 * 109.46769 * 300.00510 * 1 2 3 32 32 H 1.09002 * 109.47282 * 300.00451 * 4 2 1 33 33 H 1.09002 * 109.47167 * 60.00357 * 4 2 1 34 34 H 0.97002 * 119.99675 * 0.02562 * 5 4 2 35 35 H 1.09002 * 109.47244 * 300.00317 * 8 6 5 36 36 H 1.08999 * 109.47217 * 59.99629 * 8 6 5 37 37 H 0.96999 * 120.00245 * 179.97438 * 14 13 11 38 38 H 1.08001 * 120.00055 * 0.02562 * 20 19 9 39 39 H 1.08001 * 119.99784 * 180.23036 * 21 20 19 40 40 H 1.08008 * 119.99747 * 179.83730 * 22 21 20 41 41 H 1.08003 * 120.00153 * 179.97438 * 23 22 21 42 42 H 1.08004 * 119.99862 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.47271 * 59.99842 * 26 25 2 44 44 H 1.08993 * 109.47164 * 179.97438 * 26 25 2 45 45 H 1.09006 * 109.46985 * 299.99878 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5050 -0.7219 -1.2489 6 6 4.1789 -1.3061 -2.2594 7 8 3.5724 -1.8309 -3.1692 8 6 5.6859 -1.3072 -2.2588 9 6 6.1959 -2.0283 -3.5080 10 1 5.7620 -1.5684 -4.3958 11 6 5.7962 -3.4802 -3.4482 12 1 5.7553 -3.9902 -2.4971 13 6 5.4827 -4.1572 -4.6077 14 7 5.6477 -3.5740 -5.7748 15 14 4.8236 -5.9030 -4.5208 16 1 4.7308 -6.3268 -3.1006 17 1 3.4755 -5.9545 -5.1414 18 1 5.7401 -6.8150 -5.2512 19 6 7.6978 -1.9231 -3.5709 20 6 8.4733 -2.5029 -2.5843 21 6 9.8512 -2.4097 -2.6441 22 6 10.4533 -1.7296 -3.6860 23 6 9.6778 -1.1453 -4.6698 24 6 8.3001 -1.2418 -4.6121 25 16 2.1347 -0.8551 1.4812 26 6 1.2998 0.0577 2.8080 27 8 1.6408 -2.1875 1.4680 28 8 3.5342 -0.6350 1.5914 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 1.6766 -1.7490 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.9900 -0.3024 -0.5211 35 1 6.0499 -0.2797 -2.2588 36 1 6.0485 -1.8211 -1.3686 37 1 5.4275 -4.0505 -6.5905 38 1 8.0027 -3.0317 -1.7686 39 1 10.4572 -2.8659 -1.8752 40 1 11.5299 -1.6545 -3.7313 41 1 10.1482 -0.6136 -5.4837 42 1 7.6941 -0.7849 -5.3806 43 1 0.2202 -0.0209 2.6795 44 1 1.5821 -0.3640 3.7725 45 1 1.5949 1.1063 2.7690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527252315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:51 Heat of formation + Delta-G solvation = -114.179976 kcal Electronic energy + Delta-G solvation = -27610.800614 eV Core-core repulsion = 23719.399733 eV Total energy + Delta-G solvation = -3891.400881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.77715 -39.73949 -38.07577 -37.28081 -36.89881 -35.74774 -33.93930 -33.34288 -31.49711 -30.67484 -30.11191 -28.02136 -26.63851 -24.43427 -23.55962 -23.11948 -21.73215 -20.89865 -19.74886 -18.55755 -18.15695 -18.04389 -17.49010 -17.14179 -16.90350 -16.58470 -16.35854 -16.17121 -15.65565 -15.41022 -15.06541 -14.61488 -14.42198 -14.13778 -14.01011 -13.95729 -13.81133 -13.77367 -13.58544 -13.32937 -13.22707 -13.15231 -13.05361 -13.01896 -12.87669 -12.55898 -12.46185 -12.36448 -11.92897 -11.82643 -11.69188 -11.33340 -11.20478 -10.97764 -10.71953 -10.39226 -10.10318 -9.53663 -9.19023 -8.06355 -6.08328 -1.00020 0.78434 0.84603 1.32073 1.36120 1.44620 1.77483 1.87961 2.22503 2.44418 2.66819 3.06071 3.18309 3.34498 3.38325 3.72109 4.05469 4.12086 4.12822 4.25602 4.25964 4.36348 4.40764 4.45367 4.54791 4.61788 4.65274 4.69620 4.74431 4.83686 4.93371 4.98682 4.99076 5.20986 5.26042 5.37728 5.44500 5.52658 5.62935 5.77959 5.84101 5.95508 6.17143 6.41140 6.47143 6.60976 6.98758 7.46947 7.54451 9.03504 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.003478 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.137239 B = 8048.233583 C = 9252.260085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.568 4.568 3 H 0.181 0.819 4 C 0.124 3.876 5 N -0.750 5.750 6 C 0.512 3.488 7 O -0.548 6.548 8 C -0.122 4.122 9 C 0.083 3.917 10 H 0.029 0.971 11 C -0.488 4.488 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.914 5.914 15 Si 0.932 3.068 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.278 1.278 19 C -0.045 4.045 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.142 4.142 25 S 2.392 3.608 26 C -0.629 4.629 27 O -0.987 6.987 28 O -0.976 6.976 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.414 0.586 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.255 0.745 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.096 0.904 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 14.719 17.596 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.678 4.678 3 H 0.199 0.801 4 C -0.001 4.001 5 N -0.410 5.410 6 C 0.300 3.700 7 O -0.424 6.424 8 C -0.162 4.162 9 C 0.063 3.937 10 H 0.048 0.952 11 C -0.526 4.526 12 H 0.060 0.940 13 C -0.172 4.172 14 N -0.554 5.554 15 Si 0.759 3.241 16 H -0.196 1.196 17 H -0.216 1.216 18 H -0.203 1.203 19 C -0.046 4.046 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.164 4.164 23 C -0.145 4.145 24 C -0.160 4.160 25 S 2.580 3.420 26 C -0.783 4.783 27 O -0.984 6.984 28 O -0.973 6.973 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.253 0.747 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.115 0.885 43 H 0.178 0.822 44 H 0.158 0.842 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.752 13.552 16.793 22.611 hybrid contribution -0.853 -0.624 -0.423 1.138 sum -7.604 12.928 16.370 22.202 Atomic orbital electron populations 1.21856 0.86963 1.04750 1.07176 1.30237 1.09151 1.14650 1.13717 0.80112 1.21149 0.80230 1.00523 0.98188 1.46426 1.07065 1.60769 1.26745 1.21054 0.91321 0.76566 0.81080 1.90732 1.70827 1.43710 1.37107 1.21741 0.90405 1.02335 1.01677 1.17632 0.87975 0.94862 0.93183 0.95237 1.21005 1.43743 0.95796 0.92048 0.94018 1.25432 0.95549 1.00644 0.95597 1.70040 1.49653 1.38235 0.97448 0.85909 0.78028 0.82126 0.78016 1.19586 1.21556 1.20345 1.20529 0.97375 0.93117 0.93557 1.21038 0.94209 1.00198 0.99398 1.21359 0.94125 0.99611 0.99341 1.21264 1.00429 0.99708 0.95034 1.21295 0.93047 1.00582 0.99561 1.21102 0.95458 1.01105 0.98334 1.08498 0.76195 0.77155 0.80197 1.30084 1.15856 1.16242 1.16077 1.93551 1.82298 1.35819 1.86745 1.93515 1.30646 1.86989 1.86161 0.91400 0.88975 0.86470 0.92450 0.89345 0.74655 0.88566 0.89155 0.93647 0.87146 0.84246 0.83722 0.84791 0.88549 0.82231 0.84214 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.90 71.98 0.64 -0.58 16 2 C -0.57 -7.77 2.91 30.60 0.09 -7.68 16 3 H 0.18 1.05 8.14 -2.39 -0.02 1.03 16 4 C 0.12 3.32 5.11 86.38 0.44 3.77 16 5 N -0.75 -24.57 5.22 -463.06 -2.42 -26.98 16 6 C 0.51 22.55 7.58 87.66 0.66 23.21 16 7 O -0.55 -29.84 14.98 -3.03 -0.05 -29.89 16 8 C -0.12 -5.19 4.95 29.85 0.15 -5.04 16 9 C 0.08 4.30 1.67 -12.29 -0.02 4.28 16 10 H 0.03 1.77 6.98 -2.39 -0.02 1.75 16 11 C -0.49 -28.46 6.37 25.60 0.16 -28.30 16 12 H 0.04 2.45 7.82 -2.91 -0.02 2.42 16 13 C 0.03 1.61 5.45 84.66 0.46 2.08 16 14 N -0.91 -57.62 12.87 21.45 0.28 -57.35 16 15 Si 0.93 48.93 29.54 68.60 2.03 50.95 16 16 H -0.27 -13.95 7.11 99.48 0.71 -13.24 16 17 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 18 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 19 C -0.05 -2.12 4.77 -19.87 -0.09 -2.22 16 20 C -0.13 -5.44 8.86 22.27 0.20 -5.24 16 21 C -0.13 -4.36 10.05 22.27 0.22 -4.14 16 22 C -0.15 -4.73 10.05 22.27 0.22 -4.51 16 23 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16 24 C -0.14 -6.26 9.67 22.27 0.22 -6.05 16 25 S 2.39 42.06 4.69 -56.49 -0.27 41.79 16 26 C -0.63 -2.55 10.01 113.37 1.14 -1.41 16 27 O -0.99 -27.95 18.06 -127.37 -2.30 -30.25 16 28 O -0.98 -24.13 16.06 -127.37 -2.05 -26.18 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.12 -0.08 6.39 -2.39 -0.02 -0.09 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.41 11.43 6.40 -92.71 -0.59 10.84 16 35 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 36 H 0.09 3.65 7.78 -2.39 -0.02 3.63 16 37 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.11 4.57 7.76 -2.91 -0.02 4.55 16 39 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 41 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.10 4.46 7.95 -2.91 -0.02 4.43 16 43 H 0.16 -0.18 6.78 -2.39 -0.02 -0.19 16 44 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.16 -0.35 8.14 -2.39 -0.02 -0.37 16 Total: -1.00 -92.07 384.62 0.33 -91.74 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.40 Total: 22.35 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.71 Total: -36.19 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.14 Total: -84.33 kcal Atomic # 8 Polarization: -81.93 SS G_CDS: -4.39 Total: -86.32 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.95 kcal Atomic # 16 Polarization: 42.06 SS G_CDS: -0.27 Total: 41.79 kcal Total: -92.07 0.33 -91.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.439 kcal (2) G-P(sol) polarization free energy of solvation -92.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds