Wall clock time and date at job start Sat Apr 11 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47186 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00071 * 2 1 3 5 5 N 1.46502 * 109.46864 * 179.97438 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 S 1.81397 * 109.47072 * 120.00014 * 2 1 3 26 26 C 1.81390 * 101.92198 * 304.99757 * 25 2 1 27 27 O 1.42107 * 108.57634 * 59.48785 * 25 2 1 28 28 O 1.42103 * 108.57758 * 190.51030 * 25 2 1 29 29 H 1.08990 * 109.47570 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46784 * 300.00240 * 1 2 3 31 31 H 1.09008 * 109.46854 * 59.99675 * 1 2 3 32 32 H 1.08998 * 109.47146 * 60.00301 * 4 2 1 33 33 H 1.08995 * 109.46642 * 299.99928 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09000 * 109.47228 * 60.00272 * 26 25 2 44 44 H 1.09007 * 109.47042 * 180.02562 * 26 25 2 45 45 H 1.08995 * 109.47329 * 300.00000 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5050 -0.7207 -1.2496 6 6 4.1788 -1.3047 -2.2603 7 8 3.5723 -1.8302 -3.1697 8 6 5.6858 -1.3047 -2.2603 9 6 6.1957 -2.0258 -3.5097 10 1 5.7477 -3.0179 -3.5648 11 6 5.8178 -1.2351 -4.7356 12 1 5.6781 -0.1663 -4.6669 13 6 5.6504 -1.8759 -5.9448 14 7 5.9478 -3.1517 -6.0595 15 14 5.0083 -0.9300 -7.4222 16 1 4.9260 -1.8385 -8.5939 17 1 3.6582 -0.3922 -7.1169 18 1 5.9304 0.1926 -7.7300 19 6 7.6955 -2.1552 -3.4380 20 6 8.4895 -1.0243 -3.4768 21 6 9.8650 -1.1428 -3.4066 22 6 10.4469 -2.3927 -3.3068 23 6 9.6531 -3.5239 -3.2733 24 6 8.2774 -3.4051 -3.3391 25 16 2.1346 -0.8551 1.4811 26 6 1.2998 0.0577 2.8078 27 8 1.6407 -2.1875 1.4679 28 8 3.5342 -0.6350 1.5913 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 -0.2074 -2.1393 33 1 1.6766 -1.7489 -1.2492 34 1 3.9900 -0.3007 -0.5221 35 1 6.0492 -1.8182 -1.3702 36 1 6.0492 -0.2770 -2.2606 37 1 6.3567 -3.6232 -5.3169 38 1 8.0350 -0.0479 -3.5588 39 1 10.4850 -0.2589 -3.4324 40 1 11.5216 -2.4854 -3.2547 41 1 10.1077 -4.5004 -3.1950 42 1 7.6573 -4.2890 -3.3128 43 1 0.2203 -0.0209 2.6794 44 1 1.5830 -0.3636 3.7725 45 1 1.5950 1.1062 2.7689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527252316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:56 Heat of formation + Delta-G solvation = -89.519702 kcal Electronic energy + Delta-G solvation = -27590.736995 eV Core-core repulsion = 23700.405464 eV Total energy + Delta-G solvation = -3890.331531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.27894 -38.31342 -37.31211 -36.37034 -35.97545 -34.19103 -32.84202 -31.26711 -30.06397 -29.96460 -28.95326 -26.58836 -24.68212 -23.06489 -22.55828 -21.61643 -20.28531 -19.50736 -19.02785 -17.46320 -17.05502 -16.58264 -16.34311 -16.16363 -15.70403 -15.60447 -14.80383 -14.52895 -14.13078 -13.96522 -13.70335 -13.65258 -13.60980 -13.30230 -13.05924 -13.00696 -12.64501 -12.57720 -12.35347 -12.28848 -12.25219 -12.13002 -11.80356 -11.76870 -11.42532 -11.33666 -10.86215 -10.69732 -10.55685 -10.38456 -10.08704 -10.01568 -9.63910 -9.07553 -8.76822 -8.57613 -8.24842 -8.08762 -7.59116 -6.18630 -3.87430 -0.39395 2.24217 2.29530 2.35208 3.27361 3.35713 3.45291 3.51646 3.56849 3.71531 3.73016 4.09530 4.22879 4.36651 4.59377 4.64698 4.68474 4.72329 4.98985 5.15846 5.23086 5.43020 5.51497 5.59468 5.61276 5.64183 5.68419 5.80605 5.85671 6.07821 6.14521 6.23029 6.36829 6.47870 6.68868 6.75389 6.83922 6.97557 7.25961 7.27700 7.42749 7.77883 7.90575 7.94316 8.27052 8.55269 8.95682 9.01623 9.81630 11.20871 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.003426 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.634021 B = 8170.347689 C = 9797.729143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.585 4.585 3 H 0.143 0.857 4 C 0.136 3.864 5 N -0.766 5.766 6 C 0.517 3.483 7 O -0.495 6.495 8 C -0.118 4.118 9 C 0.071 3.929 10 H 0.051 0.949 11 C -0.568 4.568 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 1.061 2.939 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.032 4.032 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.125 4.125 24 C -0.130 4.130 25 S 2.416 3.584 26 C -0.660 4.660 27 O -0.929 6.929 28 O -0.933 6.933 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 9.105 17.721 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.695 4.695 3 H 0.161 0.839 4 C 0.011 3.989 5 N -0.427 5.427 6 C 0.304 3.696 7 O -0.366 6.366 8 C -0.158 4.158 9 C 0.052 3.948 10 H 0.069 0.931 11 C -0.605 4.605 12 H 0.063 0.937 13 C -0.174 4.174 14 N -0.541 5.541 15 Si 0.890 3.110 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.218 1.218 19 C -0.033 4.033 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.170 4.170 23 C -0.143 4.143 24 C -0.148 4.148 25 S 2.597 3.403 26 C -0.809 4.809 27 O -0.926 6.926 28 O -0.930 6.930 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.184 7.809 15.488 19.179 hybrid contribution 0.207 1.305 1.854 2.276 sum -7.977 9.114 17.342 21.152 Atomic orbital electron populations 1.21679 0.89101 1.04696 1.04664 1.30338 1.07552 1.13959 1.17617 0.83892 1.20964 0.82046 1.00832 0.95069 1.46597 1.05648 1.62610 1.27857 1.20899 0.90903 0.77271 0.80479 1.90752 1.69901 1.42109 1.33791 1.21688 0.90348 1.02802 1.00948 1.17888 0.86453 0.98095 0.92349 0.93134 1.21531 1.50761 0.94468 0.93747 0.93678 1.25569 0.94842 0.96482 1.00494 1.70722 1.38764 1.09282 1.35377 0.83675 0.76254 0.74994 0.76044 1.20954 1.21615 1.21767 1.20830 0.98714 0.91935 0.91812 1.20924 0.92635 0.98935 0.99926 1.21009 0.95178 0.96721 1.01934 1.20820 0.98543 0.93039 1.04643 1.20962 0.94091 0.97652 1.01579 1.21080 0.94343 0.97557 1.01800 1.08259 0.76467 0.77188 0.78417 1.30342 1.15128 1.15758 1.19709 1.93611 1.81829 1.31575 1.85554 1.93577 1.27644 1.86506 1.85244 0.90044 0.90906 0.89615 0.89285 0.89903 0.76080 0.91163 0.90026 0.91728 0.86679 0.87466 0.87603 0.87450 0.87118 0.85126 0.85165 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.90 37.16 0.33 -0.43 16 2 C -0.59 -4.46 2.91 -26.73 -0.08 -4.54 16 3 H 0.14 0.71 8.14 -51.92 -0.42 0.28 16 4 C 0.14 1.76 5.11 -4.04 -0.02 1.74 16 5 N -0.77 -12.13 5.22 -60.29 -0.31 -12.45 16 6 C 0.52 10.83 7.58 -10.99 -0.08 10.74 16 7 O -0.49 -12.60 15.02 5.55 0.08 -12.51 16 8 C -0.12 -2.43 4.95 -27.88 -0.14 -2.56 16 9 C 0.07 1.76 1.23 -92.92 -0.11 1.65 16 10 H 0.05 1.41 6.59 -51.93 -0.34 1.07 16 11 C -0.57 -15.67 6.35 -34.44 -0.22 -15.89 16 12 H 0.04 1.24 7.82 -52.48 -0.41 0.83 16 13 C 0.03 0.92 5.45 -17.83 -0.10 0.83 16 14 N -0.91 -28.05 13.56 55.43 0.75 -27.30 16 15 Si 1.06 26.44 29.91 -169.99 -5.08 21.36 16 16 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.03 -0.74 4.53 -104.62 -0.47 -1.21 16 20 C -0.11 -2.23 8.90 -39.58 -0.35 -2.59 16 21 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16 22 C -0.15 -2.73 10.05 -39.58 -0.40 -3.12 16 23 C -0.12 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.13 -2.80 9.18 -39.58 -0.36 -3.16 16 25 S 2.42 21.36 4.69 -107.50 -0.50 20.85 16 26 C -0.66 -2.68 10.01 101.05 1.01 -1.67 16 27 O -0.93 -11.97 18.06 -57.83 -1.04 -13.01 16 28 O -0.93 -11.27 16.07 -57.83 -0.93 -12.20 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.16 6.39 -51.93 -0.33 -0.17 16 31 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 5.50 6.40 -40.82 -0.26 5.24 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.08 1.55 7.96 -51.93 -0.41 1.14 16 37 H 0.27 8.29 6.24 -40.82 -0.25 8.04 16 38 H 0.12 2.36 7.85 -52.48 -0.41 1.94 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.36 7.95 -52.49 -0.42 1.94 16 43 H 0.13 0.27 6.77 -51.92 -0.35 -0.08 16 44 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 45 H 0.13 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -39.16 382.39 -9.71 -48.87 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.64 Total: 6.43 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -1.79 Total: -25.79 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.44 Total: -39.75 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.89 Total: -37.72 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -5.08 Total: 21.36 kcal Atomic # 16 Polarization: 21.36 SS G_CDS: -0.50 Total: 20.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.16 -9.71 -48.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.651 kcal (2) G-P(sol) polarization free energy of solvation -39.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds