Wall clock time and date at job start Sat Apr 11 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47186 * 2 1 4 4 C 1.53005 * 109.46912 * 240.00071 * 2 1 3 5 5 N 1.46502 * 109.46864 * 179.97438 * 4 2 1 6 6 C 1.34777 * 119.99559 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00046 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99686 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46990 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.46934 * 305.97546 * 9 8 6 11 11 C 1.50700 * 109.47299 * 65.97885 * 9 8 6 12 12 H 1.08008 * 119.99531 * 26.90748 * 11 9 8 13 13 C 1.37869 * 120.00160 * 206.90965 * 11 9 8 14 14 N 1.31508 * 120.00032 * 353.27812 * 13 11 9 15 15 Si 1.86806 * 120.00073 * 173.54969 * 13 11 9 16 16 H 1.48497 * 109.46895 * 179.72442 * 15 13 11 17 17 H 1.48495 * 109.46957 * 299.72695 * 15 13 11 18 18 H 1.48501 * 109.46761 * 59.72686 * 15 13 11 19 19 C 1.50705 * 109.47056 * 185.97689 * 9 8 6 20 20 C 1.38237 * 120.00118 * 294.44966 * 19 9 8 21 21 C 1.38237 * 119.99818 * 179.78603 * 20 19 9 22 22 C 1.38236 * 120.00003 * 0.44191 * 21 20 19 23 23 C 1.38236 * 119.99991 * 359.81061 * 22 21 20 24 24 C 1.38228 * 119.99825 * 114.71859 * 19 9 8 25 25 S 1.81397 * 109.47072 * 120.00014 * 2 1 3 26 26 C 1.81390 * 101.92198 * 304.99757 * 25 2 1 27 27 O 1.42107 * 108.57634 * 59.48785 * 25 2 1 28 28 O 1.42103 * 108.57758 * 190.51030 * 25 2 1 29 29 H 1.08990 * 109.47570 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46784 * 300.00240 * 1 2 3 31 31 H 1.09008 * 109.46854 * 59.99675 * 1 2 3 32 32 H 1.08998 * 109.47146 * 60.00301 * 4 2 1 33 33 H 1.08995 * 109.46642 * 299.99928 * 4 2 1 34 34 H 0.97002 * 120.00062 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47229 * 60.00363 * 8 6 5 36 36 H 1.09003 * 109.47630 * 300.00294 * 8 6 5 37 37 H 0.97008 * 120.00303 * 354.69126 * 14 13 11 38 38 H 1.08005 * 119.99967 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83259 * 22 21 20 41 41 H 1.07993 * 119.99965 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00249 * 359.97438 * 24 19 9 43 43 H 1.09000 * 109.47228 * 60.00272 * 26 25 2 44 44 H 1.09007 * 109.47042 * 180.02562 * 26 25 2 45 45 H 1.08995 * 109.47329 * 300.00000 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5050 -0.7207 -1.2496 6 6 4.1788 -1.3047 -2.2603 7 8 3.5723 -1.8302 -3.1697 8 6 5.6858 -1.3047 -2.2603 9 6 6.1957 -2.0258 -3.5097 10 1 5.7477 -3.0179 -3.5648 11 6 5.8178 -1.2351 -4.7356 12 1 5.6781 -0.1663 -4.6669 13 6 5.6504 -1.8759 -5.9448 14 7 5.9478 -3.1517 -6.0595 15 14 5.0083 -0.9300 -7.4222 16 1 4.9260 -1.8385 -8.5939 17 1 3.6582 -0.3922 -7.1169 18 1 5.9304 0.1926 -7.7300 19 6 7.6955 -2.1552 -3.4380 20 6 8.4895 -1.0243 -3.4768 21 6 9.8650 -1.1428 -3.4066 22 6 10.4469 -2.3927 -3.3068 23 6 9.6531 -3.5239 -3.2733 24 6 8.2774 -3.4051 -3.3391 25 16 2.1346 -0.8551 1.4811 26 6 1.2998 0.0577 2.8078 27 8 1.6407 -2.1875 1.4679 28 8 3.5342 -0.6350 1.5913 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6767 -0.2074 -2.1393 33 1 1.6766 -1.7489 -1.2492 34 1 3.9900 -0.3007 -0.5221 35 1 6.0492 -1.8182 -1.3702 36 1 6.0492 -0.2770 -2.2606 37 1 6.3567 -3.6232 -5.3169 38 1 8.0350 -0.0479 -3.5588 39 1 10.4850 -0.2589 -3.4324 40 1 11.5216 -2.4854 -3.2547 41 1 10.1077 -4.5004 -3.1950 42 1 7.6573 -4.2890 -3.3128 43 1 0.2203 -0.0209 2.6794 44 1 1.5830 -0.3636 3.7725 45 1 1.5950 1.1062 2.7689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527252316.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:55 Heat of formation + Delta-G solvation = -119.126628 kcal Electronic energy + Delta-G solvation = -27592.020848 eV Core-core repulsion = 23700.405464 eV Total energy + Delta-G solvation = -3891.615384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.91647 -39.88691 -38.10697 -37.35074 -36.95304 -36.04115 -34.00531 -33.21358 -31.62158 -30.76855 -30.17480 -27.82075 -26.39594 -24.60710 -23.61435 -23.19976 -21.88635 -21.17679 -19.79809 -18.86883 -18.20133 -18.08914 -17.58205 -17.20215 -16.95999 -16.68216 -16.32700 -15.88517 -15.66610 -15.64766 -15.08182 -14.77897 -14.53937 -14.22276 -14.11714 -14.01715 -13.96962 -13.79394 -13.59537 -13.50684 -13.18914 -13.16635 -13.09814 -13.05724 -12.69777 -12.62185 -12.39102 -12.09177 -11.96455 -11.95573 -11.73407 -11.52652 -11.24213 -10.86523 -10.61064 -10.39149 -10.18772 -9.65278 -9.28524 -8.45378 -6.12356 -1.02864 0.66679 0.72550 1.47645 1.58524 1.72140 1.74686 1.78401 2.13114 2.62502 2.62717 3.02946 3.09883 3.34160 3.35666 3.68717 3.98198 4.04612 4.10192 4.11522 4.23414 4.27016 4.28018 4.39217 4.43477 4.46474 4.57128 4.63333 4.67570 4.80242 4.81458 4.85363 4.97515 5.04438 5.21297 5.23721 5.35498 5.38832 5.41951 5.73278 5.80618 5.93587 6.22408 6.29714 6.38921 6.50900 6.76002 7.35476 7.63887 8.94732 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012032 B = 0.003426 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.634021 B = 8170.347689 C = 9797.729143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.569 4.569 3 H 0.179 0.821 4 C 0.123 3.877 5 N -0.748 5.748 6 C 0.513 3.487 7 O -0.552 6.552 8 C -0.116 4.116 9 C 0.073 3.927 10 H 0.003 0.997 11 C -0.558 4.558 12 H 0.042 0.958 13 C -0.026 4.026 14 N -0.943 5.943 15 Si 1.101 2.899 16 H -0.289 1.289 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.125 4.125 24 C -0.154 4.154 25 S 2.395 3.605 26 C -0.629 4.629 27 O -0.985 6.985 28 O -0.977 6.977 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.260 0.740 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.160 0.840 44 H 0.140 0.860 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 12.529 19.867 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.679 4.679 3 H 0.197 0.803 4 C -0.001 4.001 5 N -0.407 5.407 6 C 0.301 3.699 7 O -0.428 6.428 8 C -0.156 4.156 9 C 0.054 3.946 10 H 0.021 0.979 11 C -0.596 4.596 12 H 0.060 0.940 13 C -0.224 4.224 14 N -0.581 5.581 15 Si 0.925 3.075 16 H -0.215 1.215 17 H -0.211 1.211 18 H -0.190 1.190 19 C -0.058 4.058 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.161 4.161 23 C -0.143 4.143 24 C -0.173 4.173 25 S 2.582 3.418 26 C -0.783 4.783 27 O -0.982 6.982 28 O -0.974 6.974 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.112 0.888 43 H 0.178 0.822 44 H 0.159 0.841 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.593 11.247 17.675 22.283 hybrid contribution 0.021 0.290 1.378 1.408 sum -7.572 11.537 19.052 23.525 Atomic orbital electron populations 1.21858 0.86869 1.04856 1.07157 1.30256 1.09246 1.14635 1.13756 0.80328 1.21170 0.79986 1.00724 0.98235 1.46395 1.07214 1.60672 1.26458 1.20997 0.91202 0.76967 0.80767 1.90725 1.70853 1.44869 1.36370 1.21626 0.90551 1.03544 0.99834 1.17711 0.88188 0.95554 0.93165 0.97858 1.21775 1.48951 0.94323 0.94532 0.93978 1.26821 0.95269 0.96693 1.03645 1.70811 1.41604 1.10488 1.35246 0.83167 0.76503 0.74621 0.73239 1.21470 1.21056 1.19036 1.20616 0.97389 0.93372 0.94397 1.21021 0.94039 0.98092 1.00867 1.21420 0.94223 0.98615 0.99920 1.21320 1.00574 0.92071 1.02138 1.21301 0.92800 0.99835 1.00367 1.21134 0.95966 0.96693 1.03492 1.08426 0.76132 0.77132 0.80074 1.30081 1.15893 1.16221 1.16061 1.93549 1.82270 1.35681 1.86713 1.93517 1.30734 1.87011 1.86150 0.91185 0.86429 0.89120 0.89630 0.92002 0.74575 0.89492 0.88041 0.93003 0.86683 0.83752 0.83386 0.84661 0.88823 0.82168 0.84114 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.90 71.98 0.64 -0.54 16 2 C -0.57 -7.68 2.91 30.60 0.09 -7.59 16 3 H 0.18 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.12 3.30 5.11 86.38 0.44 3.74 16 5 N -0.75 -24.47 5.22 -463.05 -2.42 -26.89 16 6 C 0.51 22.69 7.58 87.66 0.66 23.35 16 7 O -0.55 -30.22 15.02 -3.04 -0.05 -30.27 16 8 C -0.12 -4.98 4.95 29.85 0.15 -4.83 16 9 C 0.07 3.83 1.23 -12.28 -0.02 3.81 16 10 H 0.00 0.19 6.59 -2.39 -0.02 0.18 16 11 C -0.56 -32.09 6.35 25.60 0.16 -31.93 16 12 H 0.04 2.38 7.82 -2.91 -0.02 2.35 16 13 C -0.03 -1.59 5.45 84.65 0.46 -1.12 16 14 N -0.94 -61.70 13.56 21.44 0.29 -61.41 16 15 Si 1.10 54.70 29.91 68.60 2.05 56.75 16 16 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 17 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 C -0.06 -2.70 4.53 -19.87 -0.09 -2.79 16 20 C -0.12 -5.07 8.90 22.27 0.20 -4.87 16 21 C -0.12 -4.23 10.05 22.27 0.22 -4.01 16 22 C -0.14 -4.64 10.05 22.27 0.22 -4.41 16 23 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 24 C -0.15 -6.93 9.18 22.27 0.20 -6.73 16 25 S 2.40 39.91 4.69 -56.49 -0.27 39.64 16 26 C -0.63 -2.16 10.01 113.37 1.14 -1.03 16 27 O -0.98 -26.38 18.06 -127.37 -2.30 -28.68 16 28 O -0.98 -23.38 16.07 -127.37 -2.05 -25.42 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.12 -0.11 6.39 -2.38 -0.02 -0.12 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.42 11.43 6.40 -92.71 -0.59 10.83 16 35 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.10 3.90 7.96 -2.39 -0.02 3.88 16 37 H 0.26 17.07 6.24 -92.70 -0.58 16.49 16 38 H 0.12 4.66 7.85 -2.91 -0.02 4.63 16 39 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.09 4.37 7.95 -2.91 -0.02 4.34 16 43 H 0.16 -0.28 6.77 -2.39 -0.02 -0.29 16 44 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.16 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: -1.00 -94.34 382.39 0.56 -93.78 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.59 Total: 25.80 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 4.71 Total: -43.31 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.13 Total: -88.29 kcal Atomic # 8 Polarization: -79.98 SS G_CDS: -4.39 Total: -84.37 kcal Atomic # 14 Polarization: 54.70 SS G_CDS: 2.05 Total: 56.75 kcal Atomic # 16 Polarization: 39.91 SS G_CDS: -0.27 Total: 39.64 kcal Total: -94.34 0.56 -93.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527252316.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.349 kcal (2) G-P(sol) polarization free energy of solvation -94.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds