Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72826 * 4 3 2 6 6 C 1.38239 * 119.99901 * 179.76875 * 5 4 3 7 7 C 1.38238 * 119.99492 * 0.48004 * 6 5 4 8 8 S 1.76207 * 119.99652 * 179.77096 * 7 6 5 9 9 O 1.42101 * 106.40150 * 23.56372 * 8 7 6 10 10 O 1.42090 * 106.40261 * 156.48450 * 8 7 6 11 11 N 1.65600 * 107.21592 * 270.02532 * 8 7 6 12 12 C 1.46928 * 120.63111 * 269.71627 * 11 8 7 13 13 C 1.53625 * 108.54190 * 126.36764 * 12 11 8 14 14 C 1.53047 * 109.23801 * 54.86263 * 13 12 11 15 15 C 1.50700 * 109.44609 * 178.49708 * 14 13 12 16 16 H 1.07997 * 119.99879 * 120.06333 * 15 14 13 17 17 C 1.37876 * 120.00018 * 300.05414 * 15 14 13 18 18 N 1.31516 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46967 * 60.00115 * 19 17 15 21 21 H 1.48497 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47110 * 300.00251 * 19 17 15 23 23 C 1.53035 * 109.53725 * 298.50739 * 14 13 12 24 24 C 1.46924 * 120.63151 * 90.00119 * 11 8 7 25 25 C 1.38225 * 120.00505 * 359.79428 * 7 6 5 26 26 C 1.38232 * 119.99860 * 90.00268 * 4 3 2 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 33 33 H 1.07993 * 120.00120 * 180.25541 * 6 5 4 34 34 H 1.08995 * 109.59007 * 246.20747 * 12 11 8 35 35 H 1.09003 * 109.58477 * 6.63381 * 12 11 8 36 36 H 1.08991 * 109.63886 * 294.87001 * 13 12 11 37 37 H 1.08998 * 109.42939 * 174.72714 * 13 12 11 38 38 H 1.09003 * 109.46172 * 58.52758 * 14 13 12 39 39 H 0.96993 * 120.00784 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.49921 * 301.41457 * 23 14 13 41 41 H 1.09005 * 109.52685 * 181.33423 * 23 14 13 42 42 H 1.08997 * 109.58710 * 353.37183 * 24 11 8 43 43 H 1.09001 * 109.58910 * 113.65068 * 24 11 8 44 44 H 1.07998 * 120.00220 * 179.97438 * 25 7 6 45 45 H 1.07998 * 120.00407 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2025 1.1372 1.1962 6 6 5.5802 1.0232 1.1957 7 6 6.2686 0.9684 -0.0018 8 16 8.0252 0.8292 -0.0025 9 8 8.3827 0.2545 1.2470 10 8 8.3817 0.2551 -1.2524 11 7 8.6388 2.3673 -0.0024 12 6 8.9215 3.0606 -1.2666 13 6 8.1997 4.4166 -1.2521 14 6 8.6150 5.1957 -0.0019 15 6 7.9380 6.5420 -0.0018 16 1 7.2781 6.8145 0.8086 17 6 8.1611 7.4260 -1.0361 18 7 8.9643 7.0940 -2.0231 19 14 7.3224 9.0952 -1.0356 20 1 7.7267 9.8518 0.1765 21 1 7.7242 9.8513 -2.2488 22 1 5.8491 8.9089 -1.0343 23 6 8.2002 4.4163 1.2481 24 6 8.9167 3.0623 1.2619 25 6 5.5792 1.0233 -1.1986 26 6 4.2011 1.1321 -1.1981 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.6650 1.1846 2.1318 33 1 6.1188 0.9807 2.1307 34 1 9.9957 3.2163 -1.3657 35 1 8.5586 2.4609 -2.1013 36 1 7.1215 4.2576 -1.2401 37 1 8.4744 4.9832 -2.1418 38 1 9.6964 5.3329 -0.0021 39 1 9.1211 7.7157 -2.7510 40 1 7.1219 4.2572 1.2365 41 1 8.4749 4.9824 2.1382 42 1 8.5507 2.4637 2.0960 43 1 9.9908 3.2159 1.3661 44 1 6.1172 0.9808 -2.1341 45 1 3.6625 1.1754 -2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541913442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = -97.276803 kcal Electronic energy + Delta-G solvation = -28015.415133 eV Core-core repulsion = 24124.747229 eV Total energy + Delta-G solvation = -3890.667904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.60560 -37.82409 -37.71873 -37.07607 -35.64070 -33.44364 -32.43008 -31.13393 -30.87862 -30.07338 -27.71852 -25.79746 -25.72344 -22.98662 -22.55495 -22.33031 -21.89787 -19.57024 -18.53087 -17.88900 -17.19688 -16.72342 -16.43622 -16.26905 -16.17620 -15.60455 -14.81238 -14.73835 -14.58990 -14.05264 -13.96297 -13.61135 -13.45531 -13.21275 -12.99143 -12.81351 -12.76659 -12.62521 -12.13309 -12.11301 -11.93563 -11.86291 -11.67770 -11.38770 -11.30175 -10.98370 -10.93153 -10.74390 -10.60322 -10.39865 -10.08193 -10.06593 -9.61037 -9.40969 -9.18413 -9.06897 -9.00061 -8.42988 -8.26483 -6.03179 -4.09603 0.50623 0.79947 1.26894 3.02904 3.27539 3.33072 3.35217 3.36959 3.76809 4.00456 4.39313 4.40129 4.55488 4.60611 4.81846 4.95530 4.96278 5.06480 5.08699 5.16927 5.23743 5.26392 5.31840 5.44182 5.62839 5.72711 5.86085 5.88567 6.02970 6.04647 6.08289 6.14314 6.30712 6.31804 6.41661 6.43504 6.71017 6.73094 6.77194 6.89412 7.05988 7.17107 7.40048 7.68739 7.93623 8.05828 8.40115 8.93769 9.55283 11.02115 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.004027 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.548503 B = 6951.268719 C = 8903.488586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.096 3.904 4 C -0.043 4.043 5 C -0.121 4.121 6 C -0.021 4.021 7 C -0.664 4.664 8 S 2.689 3.311 9 O -0.965 6.965 10 O -0.962 6.962 11 N -0.987 5.987 12 C 0.118 3.882 13 C -0.123 4.123 14 C 0.052 3.948 15 C -0.513 4.513 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.279 1.279 23 C -0.124 4.124 24 C 0.122 3.878 25 C -0.018 4.018 26 C -0.119 4.119 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.574 -11.880 3.491 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.020 3.980 4 C -0.043 4.043 5 C -0.139 4.139 6 C -0.040 4.040 7 C -0.750 4.750 8 S 2.779 3.221 9 O -0.955 6.955 10 O -0.952 6.952 11 N -0.827 5.827 12 C -0.007 4.007 13 C -0.163 4.163 14 C 0.033 3.967 15 C -0.551 4.551 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.205 1.205 23 C -0.163 4.163 24 C -0.003 4.003 25 C -0.037 4.037 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.159 0.841 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.914 -12.739 3.315 17.100 hybrid contribution -1.513 1.672 -0.087 2.257 sum -12.427 -11.067 3.228 16.951 Atomic orbital electron populations 1.22780 0.80731 1.02950 1.00163 1.87972 1.19823 1.27105 1.95464 1.21454 0.89601 0.85327 1.01611 1.19824 0.94107 0.96544 0.93842 1.21118 0.94265 1.00835 0.97730 1.20878 0.94506 0.91922 0.96684 1.31230 1.27897 1.16461 0.99400 1.02007 0.73663 0.73057 0.73355 1.93542 1.82251 1.75661 1.44040 1.93550 1.82201 1.75579 1.43868 1.57583 1.77461 1.34058 1.13610 1.21841 1.01134 0.95497 0.82187 1.22093 0.97532 0.92268 1.04359 1.18575 0.96770 0.92510 0.88845 1.21171 1.27633 0.99576 1.06736 0.92864 1.24952 0.95151 0.98175 0.95641 1.69824 1.36568 1.35917 1.10611 0.86706 0.79855 0.84327 0.77356 1.20346 1.21328 1.20466 1.22015 0.99209 0.93939 1.01137 1.21550 1.00880 0.94740 0.83133 1.20907 0.94508 0.91508 0.96798 1.21139 0.94285 1.00609 0.97782 0.93875 0.89438 0.93893 0.91807 0.91843 0.85132 0.84207 0.91350 0.90938 0.94322 0.87880 0.95375 0.92912 0.92998 0.92176 0.90744 0.91284 0.84098 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.14 10.69 -35.23 -0.38 -4.51 16 3 C 0.10 0.95 6.06 36.01 0.22 1.17 16 4 C -0.04 -0.53 5.51 -104.62 -0.58 -1.10 16 5 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 6 C -0.02 -0.28 9.52 -39.58 -0.38 -0.66 16 7 C -0.66 -9.97 5.97 -39.59 -0.24 -10.21 16 8 S 2.69 44.03 5.69 -107.50 -0.61 43.42 16 9 O -0.96 -16.99 16.00 -57.17 -0.91 -17.90 16 10 O -0.96 -17.43 15.99 -57.17 -0.91 -18.34 16 11 N -0.99 -16.76 3.28 -113.27 -0.37 -17.13 16 12 C 0.12 2.14 6.41 -3.48 -0.02 2.12 16 13 C -0.12 -2.66 5.17 -26.38 -0.14 -2.79 16 14 C 0.05 1.18 2.06 -91.73 -0.19 1.00 16 15 C -0.51 -13.30 8.56 -34.44 -0.29 -13.60 16 16 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -24.14 11.30 55.43 0.63 -23.52 16 19 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 24 C 0.12 2.01 6.37 -3.71 -0.02 1.99 16 25 C -0.02 -0.26 9.52 -39.58 -0.38 -0.63 16 26 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 1.71 7.62 -52.49 -0.40 1.31 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.21 7.12 -51.93 -0.37 0.84 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.14 1.84 7.62 -52.49 -0.40 1.44 16 45 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -31.32 377.11 -10.69 -42.01 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.88 Total: 0.91 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: -1.91 Total: -26.13 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.25 Total: -40.65 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.21 Total: -40.76 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 44.03 SS G_CDS: -0.61 Total: 43.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.32 -10.69 -42.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541913442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.266 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds