Wall clock time and date at job start Sat Apr 11 2020 05:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.50703 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99770 * 269.72826 * 4 3 2 6 6 C 1.38239 * 119.99901 * 179.76875 * 5 4 3 7 7 C 1.38238 * 119.99492 * 0.48004 * 6 5 4 8 8 S 1.76207 * 119.99652 * 179.77096 * 7 6 5 9 9 O 1.42101 * 106.40150 * 23.56372 * 8 7 6 10 10 O 1.42090 * 106.40261 * 156.48450 * 8 7 6 11 11 N 1.65600 * 107.21592 * 270.02532 * 8 7 6 12 12 C 1.46928 * 120.63111 * 269.71627 * 11 8 7 13 13 C 1.53625 * 108.54190 * 126.36764 * 12 11 8 14 14 C 1.53047 * 109.23801 * 54.86263 * 13 12 11 15 15 C 1.50700 * 109.44609 * 178.49708 * 14 13 12 16 16 H 1.07997 * 119.99879 * 120.06333 * 15 14 13 17 17 C 1.37876 * 120.00018 * 300.05414 * 15 14 13 18 18 N 1.31516 * 120.00139 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46967 * 60.00115 * 19 17 15 21 21 H 1.48497 * 109.46918 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47110 * 300.00251 * 19 17 15 23 23 C 1.53035 * 109.53725 * 298.50739 * 14 13 12 24 24 C 1.46924 * 120.63151 * 90.00119 * 11 8 7 25 25 C 1.38225 * 120.00505 * 359.79428 * 7 6 5 26 26 C 1.38232 * 119.99860 * 90.00268 * 4 3 2 27 27 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 28 28 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 30 30 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 31 31 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 32 32 H 1.08001 * 120.00330 * 359.97438 * 5 4 3 33 33 H 1.07993 * 120.00120 * 180.25541 * 6 5 4 34 34 H 1.08995 * 109.59007 * 246.20747 * 12 11 8 35 35 H 1.09003 * 109.58477 * 6.63381 * 12 11 8 36 36 H 1.08991 * 109.63886 * 294.87001 * 13 12 11 37 37 H 1.08998 * 109.42939 * 174.72714 * 13 12 11 38 38 H 1.09003 * 109.46172 * 58.52758 * 14 13 12 39 39 H 0.96993 * 120.00784 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.49921 * 301.41457 * 23 14 13 41 41 H 1.09005 * 109.52685 * 181.33423 * 23 14 13 42 42 H 1.08997 * 109.58710 * 353.37183 * 24 11 8 43 43 H 1.09001 * 109.58910 * 113.65068 * 24 11 8 44 44 H 1.07998 * 120.00220 * 179.97438 * 25 7 6 45 45 H 1.07998 * 120.00407 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2025 1.1372 1.1962 6 6 5.5802 1.0232 1.1957 7 6 6.2686 0.9684 -0.0018 8 16 8.0252 0.8292 -0.0025 9 8 8.3827 0.2545 1.2470 10 8 8.3817 0.2551 -1.2524 11 7 8.6388 2.3673 -0.0024 12 6 8.9215 3.0606 -1.2666 13 6 8.1997 4.4166 -1.2521 14 6 8.6150 5.1957 -0.0019 15 6 7.9380 6.5420 -0.0018 16 1 7.2781 6.8145 0.8086 17 6 8.1611 7.4260 -1.0361 18 7 8.9643 7.0940 -2.0231 19 14 7.3224 9.0952 -1.0356 20 1 7.7267 9.8518 0.1765 21 1 7.7242 9.8513 -2.2488 22 1 5.8491 8.9089 -1.0343 23 6 8.2002 4.4163 1.2481 24 6 8.9167 3.0623 1.2619 25 6 5.5792 1.0233 -1.1986 26 6 4.2011 1.1321 -1.1981 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 3.6650 1.1846 2.1318 33 1 6.1188 0.9807 2.1307 34 1 9.9957 3.2163 -1.3657 35 1 8.5586 2.4609 -2.1013 36 1 7.1215 4.2576 -1.2401 37 1 8.4744 4.9832 -2.1418 38 1 9.6964 5.3329 -0.0021 39 1 9.1211 7.7157 -2.7510 40 1 7.1219 4.2572 1.2365 41 1 8.4749 4.9824 2.1382 42 1 8.5507 2.4637 2.0960 43 1 9.9908 3.2159 1.3661 44 1 6.1172 0.9808 -2.1341 45 1 3.6625 1.1754 -2.1332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541913442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:02 Heat of formation + Delta-G solvation = -116.635059 kcal Electronic energy + Delta-G solvation = -28016.254570 eV Core-core repulsion = 24124.747229 eV Total energy + Delta-G solvation = -3891.507341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.52913 -39.28023 -38.55655 -38.43426 -37.00396 -35.26476 -33.35340 -32.61177 -32.11763 -31.64309 -28.42593 -27.60356 -26.46339 -24.17931 -24.04756 -23.81708 -22.89733 -21.09262 -19.88404 -19.14315 -18.63612 -18.08257 -17.40179 -17.37376 -17.11131 -16.71037 -16.49852 -15.80599 -15.67558 -15.32910 -15.09791 -14.86101 -14.83668 -14.57941 -14.42539 -14.32928 -14.02668 -13.67879 -13.48238 -13.27306 -13.20976 -12.96029 -12.92472 -12.78343 -12.57395 -12.43699 -12.35485 -12.23948 -12.06007 -11.87580 -11.80330 -11.37971 -10.95316 -10.77309 -10.71220 -10.40554 -10.29871 -10.06271 -9.82494 -8.03146 -6.16281 -0.70884 -0.29941 0.27846 1.43890 1.44754 1.51682 1.85287 2.33679 2.46464 2.69918 3.04576 3.19073 3.23460 3.67638 3.77006 3.80213 3.88967 4.14218 4.26201 4.30646 4.36696 4.41589 4.49294 4.54095 4.54379 4.57946 4.66430 4.67558 4.76697 4.84860 4.86161 4.91362 4.96189 5.03660 5.06421 5.15079 5.34080 5.36677 5.38048 5.58455 5.66755 5.74235 5.78867 6.07272 6.12559 6.22166 6.44907 6.95132 7.51333 8.99907 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009671 B = 0.004027 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.548503 B = 6951.268719 C = 8903.488586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.096 3.904 4 C -0.046 4.046 5 C -0.124 4.124 6 C -0.033 4.033 7 C -0.677 4.677 8 S 2.704 3.296 9 O -0.977 6.977 10 O -0.983 6.983 11 N -0.989 5.989 12 C 0.126 3.874 13 C -0.113 4.113 14 C 0.046 3.954 15 C -0.530 4.530 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.946 3.054 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.115 4.115 24 C 0.122 3.878 25 C -0.036 4.036 26 C -0.126 4.126 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.000 1.000 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -12.218 4.452 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.020 3.980 4 C -0.047 4.047 5 C -0.142 4.142 6 C -0.052 4.052 7 C -0.765 4.765 8 S 2.797 3.203 9 O -0.967 6.967 10 O -0.973 6.973 11 N -0.828 5.828 12 C 0.001 3.999 13 C -0.153 4.153 14 C 0.028 3.972 15 C -0.569 4.569 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.773 3.227 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.154 4.154 24 C -0.003 4.003 25 C -0.055 4.055 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.018 0.982 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.161 0.839 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.911 -13.083 4.290 18.875 hybrid contribution -0.983 1.758 -0.370 2.048 sum -13.894 -11.325 3.919 18.348 Atomic orbital electron populations 1.22974 0.78936 1.03972 1.01263 1.87925 1.21818 1.27540 1.95705 1.21516 0.87905 0.85439 1.03117 1.20232 0.95763 0.95090 0.93605 1.21480 0.93865 0.99836 0.99059 1.21149 0.95428 0.91980 0.96652 1.30927 1.26484 1.18649 1.00485 1.01369 0.74015 0.72345 0.72544 1.93516 1.83023 1.75794 1.44413 1.93515 1.83094 1.75964 1.44758 1.57537 1.78030 1.34069 1.13177 1.21636 1.00668 0.94107 0.83486 1.21857 0.97426 0.93585 1.02395 1.18564 0.94757 0.92434 0.91459 1.21562 1.27631 1.01118 1.06558 0.93128 1.25645 0.95843 1.01314 0.95502 1.69962 1.37609 1.36775 1.11010 0.85802 0.79046 0.80628 0.77267 1.19946 1.21274 1.19928 1.21872 0.99450 0.94853 0.99261 1.21604 1.01165 0.93761 0.83744 1.21103 0.95489 0.92202 0.96754 1.21450 0.93835 1.00059 0.99170 0.92864 0.88567 0.92676 0.90538 0.90155 0.82492 0.83032 0.91448 0.89502 0.94770 0.90836 0.98196 0.93119 0.92895 0.91549 0.88176 0.90654 0.83855 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.83 10.69 -148.98 -1.59 -9.43 16 3 C 0.10 1.63 6.06 71.24 0.43 2.06 16 4 C -0.05 -1.04 5.51 -19.87 -0.11 -1.15 16 5 C -0.12 -2.77 9.70 22.27 0.22 -2.55 16 6 C -0.03 -0.84 9.52 22.27 0.21 -0.63 16 7 C -0.68 -19.65 5.97 22.27 0.13 -19.52 16 8 S 2.70 86.45 5.69 -56.49 -0.32 86.13 16 9 O -0.98 -33.21 16.00 -128.00 -2.05 -35.25 16 10 O -0.98 -35.28 15.99 -128.00 -2.05 -37.32 16 11 N -0.99 -32.92 3.28 -512.29 -1.68 -34.60 16 12 C 0.13 4.60 6.41 86.51 0.55 5.15 16 13 C -0.11 -4.97 5.17 30.82 0.16 -4.81 16 14 C 0.05 2.16 2.06 -11.51 -0.02 2.14 16 15 C -0.53 -27.77 8.56 25.60 0.22 -27.55 16 16 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 17 C 0.02 0.83 5.30 84.65 0.45 1.28 16 18 N -0.91 -50.57 11.30 21.45 0.24 -50.33 16 19 Si 0.95 42.17 29.54 68.60 2.03 44.20 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C -0.12 -4.30 5.30 30.67 0.16 -4.14 16 24 C 0.12 3.88 6.37 86.36 0.55 4.43 16 25 C -0.04 -1.00 9.52 22.27 0.21 -0.78 16 26 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 31 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.15 3.41 7.62 -2.91 -0.02 3.38 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.09 2.91 7.12 -2.39 -0.02 2.89 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 3.69 6.03 -2.39 -0.01 3.67 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.10 2.70 7.13 -2.39 -0.02 2.68 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.14 3.72 7.62 -2.91 -0.02 3.70 16 45 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.82 377.11 0.18 -66.64 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.97 Total: 17.31 kcal Atomic # 6 Polarization: -51.97 SS G_CDS: 4.63 Total: -47.34 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.44 Total: -84.93 kcal Atomic # 8 Polarization: -76.32 SS G_CDS: -5.69 Total: -82.00 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 86.45 SS G_CDS: -0.32 Total: 86.13 kcal Total: -66.82 0.18 -66.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541913442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.995 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds