Wall clock time and date at job start Sat Apr 11 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46752 * 2 1 4 4 C 1.35903 * 116.99522 * 179.97438 * 3 2 1 5 5 C 1.38725 * 120.05861 * 359.72783 * 4 3 2 6 6 C 1.38145 * 119.94387 * 179.74053 * 5 4 3 7 7 C 1.38270 * 120.05493 * 0.50964 * 6 5 4 8 8 S 1.76193 * 119.94348 * 179.74007 * 7 6 5 9 9 O 1.42099 * 106.40280 * 23.56834 * 8 7 6 10 10 O 1.42104 * 106.40101 * 156.48331 * 8 7 6 11 11 N 1.65601 * 107.22274 * 270.02582 * 8 7 6 12 12 C 1.46922 * 120.63059 * 269.72240 * 11 8 7 13 13 C 1.53626 * 108.54629 * 126.36428 * 12 11 8 14 14 C 1.53044 * 109.23651 * 54.85584 * 13 12 11 15 15 C 1.50698 * 109.44756 * 178.49956 * 14 13 12 16 16 H 1.08002 * 120.00369 * 120.06375 * 15 14 13 17 17 C 1.37883 * 120.00097 * 300.06530 * 15 14 13 18 18 N 1.31517 * 119.99825 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46835 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46809 * 119.99432 * 19 17 15 22 22 H 1.48491 * 109.47272 * 239.99628 * 19 17 15 23 23 C 1.53038 * 109.53884 * 298.51003 * 14 13 12 24 24 C 1.46923 * 120.62980 * 90.00128 * 11 8 7 25 25 C 1.38261 * 120.10772 * 359.76899 * 7 6 5 26 26 C 1.38138 * 120.06029 * 359.97438 * 25 7 6 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99753 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99865 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00418 * 2 1 3 31 31 H 1.09000 * 109.47050 * 240.00247 * 2 1 3 32 32 H 1.08000 * 120.02603 * 359.97438 * 5 4 3 33 33 H 1.08003 * 119.97031 * 180.27907 * 6 5 4 34 34 H 1.09002 * 109.58729 * 246.20176 * 12 11 8 35 35 H 1.09004 * 109.58665 * 6.62278 * 12 11 8 36 36 H 1.09000 * 109.63417 * 294.86962 * 13 12 11 37 37 H 1.08997 * 109.43385 * 174.72719 * 13 12 11 38 38 H 1.08998 * 109.46131 * 58.53226 * 14 13 12 39 39 H 0.96996 * 120.00365 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.50291 * 301.41813 * 23 14 13 41 41 H 1.09004 * 109.52566 * 181.32900 * 23 14 13 42 42 H 1.08997 * 109.58852 * 353.37110 * 24 11 8 43 43 H 1.08994 * 109.58857 * 113.65877 * 24 11 8 44 44 H 1.08006 * 119.96917 * 179.97438 * 25 7 6 45 45 H 1.07997 * 120.03023 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1998 0.4261 0.0068 6 6 5.5690 0.6098 0.0019 7 6 6.0962 1.8880 0.0014 8 16 7.8429 2.1189 0.0021 9 8 8.4047 0.9325 -0.5420 10 8 8.0772 3.4104 -0.5424 11 7 8.3284 2.1833 1.5841 12 6 8.3880 3.4665 2.2972 13 6 7.5698 3.3445 3.5917 14 6 8.0822 2.1514 4.4016 15 6 7.3072 2.0495 5.6900 16 1 6.7395 1.1573 5.9096 17 6 7.3229 3.0952 6.5885 18 7 8.0146 4.1814 6.3214 19 14 6.3616 2.9692 8.1853 20 1 5.6721 1.6554 8.2455 21 1 7.2933 3.0930 9.3349 22 1 5.3550 4.0593 8.2443 23 6 7.8969 0.8658 3.5922 24 6 8.7135 0.9591 2.2993 25 6 5.2549 2.9852 0.0011 26 6 3.8851 2.8069 0.0006 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.7885 -0.5725 0.0116 33 1 6.2281 -0.2458 0.0022 34 1 9.4245 3.7031 2.5376 35 1 7.9675 4.2528 1.6702 36 1 6.5182 3.1938 3.3475 37 1 7.6805 4.2567 4.1780 38 1 9.1401 2.2910 4.6242 39 1 8.0260 4.9169 6.9536 40 1 6.8424 0.7384 3.3480 41 1 8.2402 0.0135 4.1785 42 1 8.5078 0.0904 1.6739 43 1 9.7765 0.9942 2.5378 44 1 5.6692 3.9827 0.0011 45 1 3.2284 3.6643 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542845452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:11 Heat of formation + Delta-G solvation = -94.665206 kcal Electronic energy + Delta-G solvation = -28159.991323 eV Core-core repulsion = 24269.436666 eV Total energy + Delta-G solvation = -3890.554657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36462 -37.77359 -37.66541 -37.04191 -35.60409 -33.42512 -32.36924 -31.14965 -30.86041 -30.05412 -29.88279 -25.74961 -24.45568 -23.09162 -22.46259 -22.34419 -21.93758 -19.54689 -18.69799 -18.40159 -17.64375 -17.00552 -16.44267 -16.32731 -16.19300 -15.35034 -14.84456 -14.57598 -14.14455 -13.90615 -13.73787 -13.71101 -13.47898 -13.28384 -13.15292 -12.87023 -12.75765 -12.71367 -12.39836 -12.12245 -12.05190 -11.91950 -11.81378 -11.36534 -11.16816 -11.07553 -10.98840 -10.92671 -10.73865 -10.59601 -10.37576 -10.06683 -9.59524 -9.23388 -9.19364 -8.99059 -8.69253 -8.40450 -8.24293 -6.02160 -4.08309 0.61027 0.92758 1.19526 2.83266 3.15444 3.26504 3.35270 3.38337 3.52097 4.02913 4.39719 4.40758 4.54468 4.56280 4.64481 4.78685 4.87802 5.09435 5.13833 5.19281 5.27737 5.32489 5.42174 5.45130 5.66591 5.73731 5.79480 5.84083 5.90151 6.04932 6.07304 6.09546 6.16403 6.33828 6.43835 6.45103 6.51967 6.72760 6.91266 7.07723 7.09965 7.19375 7.41979 7.70609 7.95157 8.07489 8.41578 8.95478 9.56701 11.03207 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008926 B = 0.004368 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.079531 B = 6408.366835 C = 8540.315770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.312 6.312 4 C 0.180 3.820 5 C -0.231 4.231 6 C 0.023 3.977 7 C -0.709 4.709 8 S 2.693 3.307 9 O -0.968 6.968 10 O -0.964 6.964 11 N -0.988 5.988 12 C 0.118 3.882 13 C -0.123 4.123 14 C 0.051 3.949 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.124 4.124 24 C 0.122 3.878 25 C 0.023 3.977 26 C -0.172 4.172 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.028 0.972 39 H 0.260 0.740 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.146 0.854 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.280 -6.655 -13.330 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.225 6.225 4 C 0.133 3.867 5 C -0.250 4.250 6 C 0.003 3.997 7 C -0.795 4.795 8 S 2.784 3.216 9 O -0.958 6.958 10 O -0.954 6.954 11 N -0.828 5.828 12 C -0.006 4.006 13 C -0.163 4.163 14 C 0.032 3.968 15 C -0.550 4.550 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.163 4.163 24 C -0.003 4.003 25 C 0.003 3.997 26 C -0.191 4.191 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.164 0.836 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.878 -6.278 -13.981 17.712 hybrid contribution -1.320 -0.359 1.349 1.921 sum -10.198 -6.637 -12.632 17.539 Atomic orbital electron populations 1.21784 0.92477 1.03002 1.03659 1.22890 0.96120 0.81627 1.01854 1.86102 1.18982 1.29897 1.87535 1.19241 0.82182 0.94414 0.90828 1.21299 0.94328 0.98292 1.11110 1.20667 0.94919 0.95505 0.88578 1.31019 1.27503 0.99674 1.21303 1.01826 0.73683 0.73277 0.72845 1.93531 1.76426 1.48950 1.76913 1.93545 1.84726 1.40376 1.76774 1.57585 1.80177 1.14652 1.30384 1.21828 1.01838 0.81711 0.95245 1.22093 0.96708 1.04447 0.93025 1.18582 0.97040 0.88862 0.92271 1.21249 1.29749 1.01533 1.02456 0.92785 1.24952 0.95438 0.95480 0.98058 1.69848 1.41286 1.05822 1.35934 0.86600 0.79909 0.77956 0.83884 1.19948 1.21065 1.21115 1.22013 0.98597 1.01116 0.94570 1.21532 0.99810 0.84291 0.94619 1.20727 0.92203 0.98131 0.88604 1.20525 0.95308 0.95042 1.08255 0.90210 0.91309 0.91499 0.91482 0.91724 0.84762 0.84167 0.91415 0.90931 0.94294 0.87898 0.95366 0.93040 0.93026 0.92233 0.90820 0.91344 0.83622 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.41 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.66 10.14 -19.43 -0.20 -3.86 16 4 C 0.18 2.33 6.69 -39.22 -0.26 2.07 16 5 C -0.23 -2.83 9.04 -39.44 -0.36 -3.19 16 6 C 0.02 0.31 9.52 -39.60 -0.38 -0.07 16 7 C -0.71 -10.57 5.97 -39.56 -0.24 -10.80 16 8 S 2.69 43.91 5.69 -107.50 -0.61 43.30 16 9 O -0.97 -16.93 15.99 -57.17 -0.91 -17.85 16 10 O -0.96 -17.37 15.98 -57.17 -0.91 -18.28 16 11 N -0.99 -16.85 3.28 -113.27 -0.37 -17.22 16 12 C 0.12 2.16 6.41 -3.49 -0.02 2.14 16 13 C -0.12 -2.69 5.17 -26.38 -0.14 -2.83 16 14 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 15 C -0.51 -13.39 8.56 -34.44 -0.29 -13.68 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -24.28 11.31 55.43 0.63 -23.66 16 19 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 24 C 0.12 2.03 6.37 -3.71 -0.02 2.01 16 25 C 0.02 0.32 9.51 -39.61 -0.38 -0.06 16 26 C -0.17 -2.27 9.99 -39.44 -0.39 -2.67 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 7.65 -51.93 -0.40 0.13 16 31 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 32 H 0.13 1.26 6.30 -52.49 -0.33 0.93 16 33 H 0.14 1.68 7.61 -52.48 -0.40 1.28 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.22 7.12 -51.93 -0.37 0.85 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.07 7.13 -51.93 -0.37 0.70 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.15 1.87 7.61 -52.48 -0.40 1.47 16 45 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -31.22 373.39 -10.84 -42.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.75 Total: 1.21 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -2.32 Total: -27.02 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.25 Total: -40.88 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -2.03 Total: -39.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 43.91 SS G_CDS: -0.61 Total: 43.30 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.22 -10.84 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542845452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.603 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds