Wall clock time and date at job start Sat Apr 11 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00191 * 2 1 4 4 C 1.52997 * 109.47201 * 275.51957 * 3 2 1 5 5 C 1.53788 * 113.61773 * 185.85126 * 4 3 2 6 6 C 1.53781 * 87.08358 * 220.02208 * 5 4 3 7 7 O 1.42898 * 113.61285 * 270.79727 * 6 5 4 8 8 C 1.53785 * 87.17304 * 25.38900 * 6 5 4 9 9 S 1.65603 * 120.00047 * 180.02562 * 2 1 3 10 10 O 1.42102 * 104.27522 * 30.57837 * 9 2 1 11 11 O 1.42092 * 104.27908 * 158.43498 * 9 2 1 12 12 C 1.81403 * 104.44929 * 274.50910 * 9 2 1 13 13 C 1.50693 * 109.47240 * 175.35831 * 12 9 2 14 14 C 1.38640 * 119.74844 * 269.72983 * 13 12 9 15 15 C 1.37620 * 120.24769 * 179.72440 * 14 13 12 16 16 C 1.40718 * 119.74540 * 0.56207 * 15 14 13 17 17 C 1.41394 * 120.24445 * 179.68607 * 16 15 14 18 18 H 1.07997 * 119.99523 * 159.36185 * 17 16 15 19 19 C 1.39947 * 120.00082 * 339.35354 * 17 16 15 20 20 N 1.30821 * 119.99583 * 327.52402 * 19 17 16 21 21 Si 1.86798 * 119.99950 * 147.52182 * 19 17 16 22 22 H 1.48505 * 109.46829 * 94.99219 * 21 19 17 23 23 H 1.48491 * 109.47295 * 214.99141 * 21 19 17 24 24 H 1.48504 * 109.47051 * 334.99735 * 21 19 17 25 25 C 1.40719 * 119.51071 * 359.71071 * 16 15 14 26 26 C 1.37617 * 119.74380 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47373 * 89.99517 * 1 2 3 28 28 H 1.08998 * 109.47591 * 210.00070 * 1 2 3 29 29 H 1.09003 * 109.46704 * 330.00003 * 1 2 3 30 30 H 1.09003 * 109.47495 * 155.52253 * 3 2 1 31 31 H 1.09001 * 109.47056 * 35.52027 * 3 2 1 32 32 H 1.09000 * 112.85557 * 317.05074 * 4 3 2 33 33 H 1.08997 * 113.61056 * 105.46901 * 5 4 3 34 34 H 1.09005 * 113.61075 * 334.57233 * 5 4 3 35 35 H 1.08997 * 113.61286 * 139.97643 * 6 5 4 36 36 H 0.96696 * 113.99902 * 178.47123 * 7 6 5 37 37 H 1.09007 * 113.61358 * 89.15908 * 8 6 5 38 38 H 1.09000 * 113.61248 * 220.06176 * 8 6 5 39 39 H 1.08998 * 109.47052 * 295.35791 * 12 9 2 40 40 H 1.09001 * 109.46855 * 55.35281 * 12 9 2 41 41 H 1.07999 * 119.87318 * 359.97278 * 14 13 12 42 42 H 1.08000 * 120.12749 * 180.27877 * 15 14 13 43 43 H 0.97001 * 119.99405 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.12704 * 179.97438 * 25 16 15 45 45 H 1.07997 * 119.87737 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3324 1.7797 -1.4358 5 6 3.2102 3.0360 -1.5627 6 6 2.1885 3.5504 -2.5905 7 8 2.4780 3.1546 -3.9327 8 6 1.1509 2.6541 -1.8941 9 16 2.2930 -1.4342 -0.0006 10 8 1.4414 -2.3301 -0.7016 11 8 3.5773 -1.0971 -0.5066 12 6 2.3997 -1.8960 1.7504 13 6 3.0397 -3.2547 1.8734 14 6 2.2468 -4.3919 1.8649 15 6 2.8209 -5.6382 1.9709 16 6 4.2173 -5.7549 2.1002 17 6 4.8177 -7.0297 2.2166 18 1 5.8647 -7.1567 1.9841 19 6 4.0552 -8.1268 2.6331 20 7 3.0728 -7.9568 3.4801 21 14 4.4403 -9.8339 1.9796 22 1 5.3310 -10.5403 2.9351 23 1 3.1780 -10.5996 1.8210 24 1 5.1184 -9.7187 0.6635 25 6 5.0117 -4.5934 2.1134 26 6 4.4165 -3.3578 1.9994 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.1892 1.1157 0.4258 31 1 1.6548 2.0016 0.5971 32 1 2.5926 0.9920 -2.1428 33 1 4.1950 2.8395 -1.9866 34 1 3.2519 3.6334 -0.6518 35 1 1.9763 4.6156 -2.4997 36 1 1.8263 3.4554 -4.5807 37 1 0.6285 3.1468 -1.0740 38 1 0.4756 2.1497 -2.5852 39 1 3.0023 -1.1609 2.2839 40 1 1.3984 -1.9257 2.1799 41 1 1.1749 -4.2996 1.7707 42 1 2.2018 -6.5230 1.9596 43 1 2.5442 -8.7173 3.7685 44 1 6.0843 -4.6714 2.2125 45 1 5.0241 -2.4651 2.0088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567265380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:38 Heat of formation + Delta-G solvation = -108.679479 kcal Electronic energy + Delta-G solvation = -27153.580917 eV Core-core repulsion = 23262.418556 eV Total energy + Delta-G solvation = -3891.162362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.45080 -39.58502 -38.13654 -37.30328 -36.84104 -36.00333 -35.28506 -33.28128 -31.31086 -29.64398 -29.46303 -26.65516 -26.37256 -25.84610 -23.40122 -23.06132 -22.10988 -20.54917 -19.81063 -19.34244 -18.58910 -17.99787 -17.55316 -17.34660 -17.08672 -16.33022 -16.17082 -15.99945 -15.70426 -15.64998 -15.33535 -14.62759 -14.41182 -14.20424 -13.96436 -13.92995 -13.67722 -13.53029 -13.47168 -13.34191 -13.26769 -13.10060 -13.08514 -12.83194 -12.75273 -12.55163 -12.34880 -12.27566 -12.06189 -11.84309 -11.68505 -11.62851 -11.38615 -11.04270 -10.92575 -10.70070 -9.90621 -9.49912 -9.36413 -8.87282 -6.38515 -0.75303 0.87291 1.03794 1.34807 1.44364 1.54722 1.82391 2.14355 2.52518 2.95011 3.19726 3.24995 3.59589 3.61949 3.71268 3.77509 3.89473 3.95527 4.02842 4.11151 4.41189 4.46698 4.50823 4.57512 4.65049 4.68921 4.74360 4.83921 4.90977 4.94219 4.94979 5.00088 5.05129 5.05874 5.18370 5.21871 5.26826 5.31298 5.48617 5.57493 5.76194 5.82129 5.97194 6.01711 6.24243 6.55088 6.79494 6.90638 6.92565 8.10964 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.002366 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.212461 B =11831.416498 C =12009.009638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.000 6.000 3 C 0.126 3.874 4 C -0.135 4.135 5 C -0.130 4.130 6 C 0.074 3.926 7 O -0.581 6.581 8 C -0.153 4.153 9 S 2.588 3.412 10 O -1.000 7.000 11 O -0.994 6.994 12 C -0.519 4.519 13 C -0.246 4.246 14 C -0.082 4.082 15 C -0.211 4.211 16 C 0.089 3.911 17 C -0.495 4.495 18 H 0.083 0.917 19 C 0.048 3.952 20 N -0.791 5.791 21 Si 0.975 3.025 22 H -0.255 1.255 23 H -0.262 1.262 24 H -0.261 1.261 25 C -0.254 4.254 26 C -0.073 4.073 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.396 0.604 37 H 0.120 0.880 38 H 0.061 0.939 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.297 0.703 44 H 0.104 0.896 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 21.728 -3.917 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.838 5.838 3 C 0.002 3.998 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.016 3.984 7 O -0.389 6.389 8 C -0.190 4.190 9 S 2.688 3.312 10 O -0.990 6.990 11 O -0.984 6.984 12 C -0.650 4.650 13 C -0.250 4.250 14 C -0.101 4.101 15 C -0.230 4.230 16 C 0.086 3.914 17 C -0.522 4.522 18 H 0.101 0.899 19 C -0.173 4.173 20 N -0.413 5.413 21 Si 0.794 3.206 22 H -0.179 1.179 23 H -0.186 1.186 24 H -0.184 1.184 25 C -0.274 4.274 26 C -0.092 4.092 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.113 0.887 36 H 0.246 0.754 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.132 0.868 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.601 20.999 -4.278 22.738 hybrid contribution -0.280 -0.962 0.014 1.002 sum -7.881 20.037 -4.264 21.949 Atomic orbital electron populations 1.21688 0.77156 1.04554 1.02408 1.57382 1.15843 1.20586 1.90015 1.21620 0.97070 0.84851 0.96284 1.22927 0.98718 0.96601 0.97280 1.23167 0.97576 0.96519 0.99521 1.22845 0.96142 0.97672 0.81769 1.86465 1.53981 1.80738 1.17762 1.23739 0.96061 0.97715 1.01516 1.05868 0.73008 0.73091 0.79190 1.93478 1.67891 1.65725 1.71917 1.93483 1.42832 1.83012 1.79049 1.28994 1.10607 1.02942 1.22486 1.18483 0.93488 0.91863 1.21167 1.20861 0.98553 0.92622 0.98077 1.21097 0.95312 0.96216 1.10382 1.18009 0.92490 0.93404 0.87536 1.19909 0.98315 0.93167 1.40819 0.89868 1.26852 0.93188 1.05760 0.91459 1.69915 1.15915 1.36237 1.19269 0.85317 0.79531 0.75654 0.80086 1.17886 1.18564 1.18433 1.21156 0.98771 0.92624 1.14806 1.20869 0.94032 0.97123 0.97183 0.93337 0.91280 0.87198 0.90251 0.85963 0.93206 0.92718 0.85406 0.88687 0.75406 0.86208 0.91996 0.82934 0.83205 0.86823 0.88530 0.89204 0.87768 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 10.24 127.77 1.31 2.78 16 2 N -1.00 -22.72 3.11 -539.14 -1.68 -24.40 16 3 C 0.13 2.27 5.15 86.38 0.44 2.71 16 4 C -0.13 -2.79 3.90 -10.21 -0.04 -2.83 16 5 C -0.13 -2.16 7.48 31.12 0.23 -1.93 16 6 C 0.07 1.06 5.27 31.12 0.16 1.23 16 7 O -0.58 -10.94 13.59 -148.98 -2.02 -12.96 16 8 C -0.15 -2.08 7.48 31.18 0.23 -1.85 16 9 S 2.59 87.86 5.31 -56.49 -0.30 87.56 16 10 O -1.00 -41.72 17.26 -127.65 -2.20 -43.92 16 11 O -0.99 -40.02 16.81 -127.65 -2.15 -42.17 16 12 C -0.52 -16.03 6.30 71.23 0.45 -15.58 16 13 C -0.25 -10.67 5.16 -19.68 -0.10 -10.77 16 14 C -0.08 -3.92 9.67 22.22 0.21 -3.70 16 15 C -0.21 -11.40 8.80 22.73 0.20 -11.20 16 16 C 0.09 4.93 5.59 -21.29 -0.12 4.81 16 17 C -0.49 -26.89 8.96 23.46 0.21 -26.68 16 18 H 0.08 4.36 8.02 -2.91 -0.02 4.34 16 19 C 0.05 2.41 4.79 85.26 0.41 2.81 16 20 N -0.79 -40.40 11.70 21.83 0.26 -40.15 16 21 Si 0.97 37.42 29.66 68.60 2.03 39.46 16 22 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 C -0.25 -12.98 9.80 22.73 0.22 -12.75 16 26 C -0.07 -3.32 9.67 22.22 0.21 -3.11 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.18 7.91 -2.39 -0.02 1.16 16 29 H 0.11 0.95 7.95 -2.39 -0.02 0.93 16 30 H 0.08 1.52 7.45 -2.39 -0.02 1.50 16 31 H 0.12 1.10 7.66 -2.39 -0.02 1.08 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 1.23 8.10 -2.38 -0.02 1.21 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.40 3.67 9.12 -74.06 -0.68 2.99 16 37 H 0.12 0.87 7.89 -2.38 -0.02 0.85 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.15 3.71 8.08 -2.39 -0.02 3.69 16 40 H 0.15 3.71 8.08 -2.39 -0.02 3.69 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.10 5.34 6.45 -2.91 -0.02 5.32 16 43 H 0.30 13.41 8.30 -92.71 -0.77 12.64 16 44 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 45 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -78.45 386.89 -1.70 -80.16 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.32 Total: 32.49 kcal Atomic # 6 Polarization: -80.10 SS G_CDS: 4.04 Total: -76.06 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -1.42 Total: -64.55 kcal Atomic # 8 Polarization: -92.68 SS G_CDS: -6.37 Total: -99.05 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.46 kcal Atomic # 16 Polarization: 87.86 SS G_CDS: -0.30 Total: 87.56 kcal Total: -78.45 -1.70 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567265380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.524 kcal (2) G-P(sol) polarization free energy of solvation -78.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds