Wall clock time and date at job start Sat Apr 11 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99743 * 2 1 4 4 C 1.38498 * 119.80945 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.65579 * 180.02562 * 4 3 2 6 6 C 1.37981 * 119.89018 * 0.23993 * 5 4 3 7 7 C 1.38976 * 120.70012 * 359.96522 * 6 5 4 8 8 C 1.37629 * 119.54934 * 359.57858 * 7 6 5 9 9 C 1.50392 * 122.34506 * 181.13156 * 8 7 6 10 10 N 1.46687 * 109.90366 * 348.81241 * 9 8 7 11 11 S 1.65597 * 121.34098 * 224.30228 * 10 9 8 12 12 O 1.42104 * 104.27664 * 153.64443 * 11 10 9 13 13 O 1.42108 * 104.27669 * 25.79315 * 11 10 9 14 14 C 1.81391 * 104.45133 * 269.71899 * 11 10 9 15 15 C 1.53006 * 109.47235 * 180.02562 * 14 11 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 11 17 17 C 1.50696 * 109.47055 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00290 * 0.02562 * 17 16 15 19 19 C 1.37887 * 120.00079 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00129 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47011 * 90.00204 * 21 19 17 23 23 H 1.48498 * 109.47112 * 210.00472 * 21 19 17 24 24 H 1.48499 * 109.47134 * 330.00583 * 21 19 17 25 25 C 1.47225 * 117.31485 * 44.03101 * 10 9 8 26 26 C 1.50609 * 117.60473 * 179.48784 * 7 6 5 27 27 H 1.08995 * 109.46871 * 299.99801 * 1 2 3 28 28 H 1.09001 * 109.46661 * 59.99999 * 1 2 3 29 29 H 1.08999 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.17601 * 359.97438 * 4 3 2 31 31 H 1.07999 * 120.05453 * 180.22978 * 5 4 3 32 32 H 1.07995 * 119.65162 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.40554 * 228.62977 * 9 8 7 34 34 H 1.09005 * 109.24401 * 108.89399 * 9 8 7 35 35 H 1.09001 * 109.47423 * 60.00430 * 14 11 10 36 36 H 1.09001 * 109.47260 * 300.00293 * 14 11 10 37 37 H 1.09001 * 109.47002 * 299.99604 * 15 14 11 38 38 H 1.08993 * 109.46955 * 60.00042 * 15 14 11 39 39 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 40 40 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 41 41 H 0.96999 * 119.99910 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.77165 * 55.66373 * 25 10 9 43 43 H 1.09003 * 109.77251 * 176.45589 * 25 10 9 44 44 H 1.08995 * 109.20267 * 39.59563 * 26 7 6 45 45 H 1.09010 * 109.15906 * 280.28353 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2877 2.3699 -0.0005 5 6 1.9181 3.5990 -0.0011 6 6 3.2963 3.6649 -0.0061 7 6 4.0621 2.5052 -0.0099 8 6 3.4371 1.2791 0.0002 9 6 4.2037 -0.0146 0.0219 10 7 5.6243 0.2423 -0.2378 11 16 6.4949 -0.7066 -1.2790 12 8 7.5319 0.1455 -1.7457 13 8 5.5217 -1.2324 -2.1710 14 6 7.1750 -2.0221 -0.2314 15 6 8.0106 -2.9756 -1.0880 16 6 8.5836 -4.0854 -0.2045 17 6 9.4061 -5.0249 -1.0483 18 1 9.5100 -4.8478 -2.1086 19 6 10.0268 -6.1100 -0.4665 20 7 9.9006 -6.3254 0.8248 21 14 11.0468 -7.2742 -1.5123 22 1 12.4545 -6.8027 -1.5482 23 1 10.9963 -8.6382 -0.9274 24 1 10.5005 -7.3070 -2.8928 25 6 6.2434 1.3814 0.4598 26 6 5.5603 2.6583 -0.0272 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2092 2.3131 -0.0014 31 1 1.3331 4.5069 0.0023 32 1 3.7851 4.6279 -0.0069 33 1 3.8097 -0.6820 -0.7447 34 1 4.0925 -0.4817 1.0005 35 1 6.3588 -2.5733 0.2355 36 1 7.8050 -1.5819 0.5415 37 1 7.3808 -3.4159 -1.8611 38 1 8.8268 -2.4241 -1.5545 39 1 9.2133 -3.6456 0.5689 40 1 7.7671 -4.6368 0.2618 41 1 10.3369 -7.0889 1.2340 42 1 6.1031 1.2754 1.5355 43 1 7.3078 1.4213 0.2282 44 1 5.8436 3.4864 0.6224 45 1 5.8862 2.8734 -1.0449 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590763216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:33 Heat of formation + Delta-G solvation = -93.834080 kcal Electronic energy + Delta-G solvation = -27282.654887 eV Core-core repulsion = 23392.136270 eV Total energy + Delta-G solvation = -3890.518617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76503 -38.50849 -36.94342 -36.46301 -35.69913 -34.64523 -32.52466 -32.16884 -31.57779 -29.15962 -27.79751 -27.60746 -25.32922 -23.93903 -23.62706 -22.11298 -20.83505 -20.35524 -18.60842 -18.10575 -17.38802 -16.73006 -16.51039 -16.34344 -16.07925 -15.68637 -15.58476 -15.08262 -14.77043 -14.46606 -14.16630 -14.11107 -13.95219 -13.70243 -13.02799 -12.79898 -12.61570 -12.51253 -12.26122 -12.15787 -12.05398 -11.91018 -11.82447 -11.75320 -11.65754 -11.30364 -11.23723 -11.21027 -10.91139 -10.83484 -10.79443 -10.40651 -9.93541 -9.53227 -9.23793 -8.96869 -8.86261 -8.39615 -8.35175 -6.04604 -4.07539 0.43269 1.04173 1.16616 2.72524 2.98628 3.31372 3.37385 3.41666 3.43992 4.03397 4.23241 4.37880 4.43587 4.48394 4.60976 4.67549 4.82019 4.85422 4.93838 4.98386 5.07844 5.15872 5.18013 5.20535 5.26763 5.29107 5.31958 5.37875 5.46832 5.55725 5.71328 5.84171 5.86569 5.91999 6.03748 6.20253 6.26916 6.37330 6.44691 6.46888 6.51988 6.88787 7.10935 7.58449 7.68450 7.93587 8.34134 8.98730 9.57043 11.06661 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002479 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.297359 B =11293.940329 C =12049.456239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.133 3.867 4 C -0.214 4.214 5 C -0.081 4.081 6 C -0.159 4.159 7 C -0.030 4.030 8 C -0.116 4.116 9 C 0.167 3.833 10 N -1.007 6.007 11 S 2.599 3.401 12 O -0.958 6.958 13 O -0.957 6.957 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.120 3.880 26 C -0.097 4.097 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.545 21.016 2.767 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.087 3.913 4 C -0.233 4.233 5 C -0.099 4.099 6 C -0.177 4.177 7 C -0.030 4.030 8 C -0.118 4.118 9 C 0.042 3.958 10 N -0.843 5.843 11 S 2.697 3.303 12 O -0.948 6.948 13 O -0.948 6.948 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.005 4.005 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.328 20.857 1.966 27.835 hybrid contribution 0.181 -0.733 0.250 0.796 sum -18.147 20.123 2.216 27.188 Atomic orbital electron populations 1.23075 0.78230 1.04172 1.01218 1.86090 1.21469 1.26666 1.88377 1.18882 0.91373 0.84489 0.96506 1.21124 0.99906 0.92343 1.09888 1.20817 0.94531 0.96955 0.97621 1.21076 0.93786 0.97863 1.04963 1.19317 0.95663 0.91399 0.96648 1.18992 0.90267 0.95620 1.06902 1.19945 0.78646 0.94301 1.02902 1.57966 1.18998 1.42983 1.64312 1.05445 0.74073 0.75606 0.75190 1.93555 1.58463 1.64408 1.78410 1.93560 1.59437 1.80837 1.60917 1.30595 1.11968 1.16360 1.15012 1.21509 0.97652 0.97181 0.98211 1.19063 0.95882 0.91362 0.94457 1.21259 1.30592 1.09583 0.94978 0.92368 1.25025 0.96579 0.97796 0.95007 1.69959 1.44055 1.29362 1.10078 0.86552 0.80570 0.80112 0.80556 1.20565 1.21176 1.19739 1.21396 0.97883 0.84279 0.96943 1.20844 0.90585 0.98712 1.03383 0.92679 0.92641 0.88012 0.85397 0.85841 0.85879 0.87397 0.90218 0.85352 0.85393 0.91586 0.91598 0.96112 0.96087 0.92904 0.90578 0.88237 0.89264 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.32 9.68 -19.43 -0.19 -3.51 16 3 C 0.13 1.47 6.65 -39.10 -0.26 1.21 16 4 C -0.21 -1.93 9.03 -39.53 -0.36 -2.29 16 5 C -0.08 -0.68 10.04 -39.72 -0.40 -1.08 16 6 C -0.16 -1.43 9.58 -39.40 -0.38 -1.80 16 7 C -0.03 -0.32 5.76 -104.61 -0.60 -0.92 16 8 C -0.12 -1.37 5.82 -104.61 -0.61 -1.98 16 9 C 0.17 2.04 5.75 -5.24 -0.03 2.01 16 10 N -1.01 -12.56 3.20 -115.26 -0.37 -12.92 16 11 S 2.60 40.37 5.47 -107.50 -0.59 39.78 16 12 O -0.96 -16.91 16.77 -57.54 -0.96 -17.87 16 13 O -0.96 -17.62 16.62 -57.54 -0.96 -18.58 16 14 C -0.61 -9.61 6.18 37.16 0.23 -9.38 16 15 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 16 C 0.03 0.78 4.97 -27.89 -0.14 0.65 16 17 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 21 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 C 0.12 1.20 6.35 -3.76 -0.02 1.18 16 26 C -0.10 -0.90 5.87 -28.04 -0.16 -1.06 16 27 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 0.86 6.28 -52.48 -0.33 0.53 16 31 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.12 0.84 8.05 -52.49 -0.42 0.42 16 33 H 0.11 1.45 6.71 -51.93 -0.35 1.10 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 36 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.96 7.12 -51.93 -0.37 0.59 16 44 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -35.93 378.50 -10.81 -46.75 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.88 Total: -1.75 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -2.29 Total: -28.30 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.37 Total: -38.91 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -2.11 Total: -39.96 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 40.37 SS G_CDS: -0.59 Total: 39.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.93 -10.81 -46.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590763216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.086 kcal (2) G-P(sol) polarization free energy of solvation -35.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds