Wall clock time and date at job start Sat Apr 11 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36011 * 117.00168 * 2 1 4 4 C 1.38502 * 120.08170 * 0.27568 * 3 2 1 5 5 C 1.38278 * 120.01902 * 180.27132 * 4 3 2 6 6 C 1.38251 * 120.17978 * 359.72644 * 5 4 3 7 7 C 1.50702 * 119.92113 * 179.97438 * 6 5 4 8 8 S 1.81402 * 109.47444 * 270.02299 * 7 6 5 9 9 C 1.81395 * 101.92170 * 179.97438 * 8 7 6 10 10 O 1.42095 * 108.57773 * 294.48986 * 8 7 6 11 11 O 1.42102 * 108.57496 * 65.51282 * 8 7 6 12 12 C 1.38217 * 120.16055 * 359.97438 * 6 5 4 13 13 C 1.38723 * 119.98115 * 359.97438 * 12 6 5 14 14 N 1.39969 * 120.08946 * 180.02562 * 13 12 6 15 15 C 1.46500 * 120.00304 * 354.65231 * 14 13 12 16 16 C 1.52997 * 109.47521 * 184.84365 * 15 14 13 17 17 C 1.50699 * 115.54917 * 80.99672 * 16 15 14 18 18 H 1.08005 * 119.99789 * 219.77213 * 17 16 15 19 19 C 1.37875 * 120.00214 * 39.77209 * 17 16 15 20 20 N 1.31520 * 119.99917 * 16.75478 * 19 17 16 21 21 Si 1.86792 * 120.00326 * 196.75851 * 19 17 16 22 22 H 1.48507 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47332 * 119.99676 * 21 19 17 24 24 H 1.48494 * 109.47311 * 240.00086 * 21 19 17 25 25 C 1.52998 * 117.49694 * 295.33135 * 16 15 14 26 26 C 1.53001 * 60.03146 * 252.49401 * 25 16 15 27 27 H 1.09003 * 109.46651 * 299.99881 * 1 2 3 28 28 H 1.09001 * 109.46844 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99053 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.90842 * 179.70048 * 5 4 3 32 32 H 1.09003 * 109.46940 * 30.02347 * 7 6 5 33 33 H 1.08998 * 109.47441 * 150.01936 * 7 6 5 34 34 H 1.09000 * 109.47002 * 60.00504 * 9 8 7 35 35 H 1.09000 * 109.47203 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47422 * 300.00381 * 9 8 7 37 37 H 1.08000 * 120.01060 * 180.02562 * 12 6 5 38 38 H 0.97005 * 119.99399 * 174.65718 * 14 13 12 39 39 H 1.09007 * 109.46557 * 64.84513 * 15 14 13 40 40 H 1.09004 * 109.47008 * 304.84713 * 15 14 13 41 41 H 0.96991 * 120.00257 * 184.98200 * 20 19 17 42 42 H 1.09005 * 117.49974 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.50078 * 144.99684 * 25 16 15 44 44 H 1.08997 * 117.49351 * 107.49867 * 26 25 16 45 45 H 1.08995 * 117.50117 * 252.52411 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.2939 2.3745 0.0058 5 6 1.9231 3.6059 0.0001 6 6 3.3035 3.6810 -0.0056 7 6 3.9831 5.0261 -0.0124 8 16 4.2484 5.5611 -1.7253 9 6 5.0596 7.1671 -1.4950 10 8 5.1704 4.6715 -2.3398 11 8 2.9823 5.7770 -2.3333 12 6 4.0619 2.5255 -0.0052 13 6 3.4377 1.2867 0.0016 14 7 4.2035 0.1150 0.0026 15 6 5.6611 0.1925 -0.1217 16 6 6.2410 -1.2203 -0.2146 17 6 6.1751 -1.8616 -1.5767 18 1 5.9321 -2.9100 -1.6688 19 6 6.4251 -1.1102 -2.7053 20 7 7.0324 0.0517 -2.6006 21 14 5.9011 -1.7422 -4.3832 22 1 5.2418 -3.0641 -4.2305 23 1 4.9489 -0.7830 -4.9983 24 1 7.0954 -1.8819 -5.2546 25 6 6.0798 -2.1315 1.0038 26 6 7.4519 -1.5468 0.6629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2153 2.3194 0.0107 31 1 1.3344 4.5113 -0.0003 32 1 3.3548 5.7532 0.5021 33 1 4.9435 4.9506 0.4975 34 1 5.9883 7.0289 -0.9414 35 1 5.2791 7.6062 -2.4681 36 1 4.3993 7.8310 -0.9369 37 1 5.1401 2.5871 -0.0093 38 1 3.7689 -0.7483 0.0855 39 1 6.0738 0.6980 0.7515 40 1 5.9199 0.7513 -1.0211 41 1 7.1438 0.6130 -3.3837 42 1 5.5610 -1.7243 1.8718 43 1 5.9262 -3.1949 0.8203 44 1 7.8355 -0.7551 1.3064 45 1 8.2009 -2.2254 0.2547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594708449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:22 Heat of formation + Delta-G solvation = -46.685423 kcal Electronic energy + Delta-G solvation = -28010.501539 eV Core-core repulsion = 24122.027441 eV Total energy + Delta-G solvation = -3888.474098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.93815 -37.55226 -36.93828 -36.84417 -35.85568 -34.30604 -32.15677 -31.81690 -29.74714 -29.13559 -27.80283 -26.18462 -25.67146 -24.81414 -21.51729 -21.34769 -20.82096 -19.08400 -18.77873 -17.82491 -16.85387 -16.61903 -16.29120 -16.01477 -15.69294 -15.46260 -15.20427 -14.64851 -14.36973 -14.00793 -13.91167 -13.66020 -13.44618 -13.34609 -13.25742 -13.08932 -12.64490 -12.23156 -12.04309 -11.91126 -11.84109 -11.81014 -11.64192 -11.43297 -11.23311 -10.92210 -10.90067 -10.81642 -10.67807 -10.46238 -10.36230 -10.23571 -9.51533 -9.37229 -9.00569 -8.72879 -8.11928 -8.03029 -6.51720 -6.05580 -4.07117 -0.07442 1.71682 1.96754 2.78695 3.32763 3.43587 3.45069 3.55657 3.69866 3.98715 4.15981 4.25181 4.43424 4.58072 4.61874 4.66461 4.97617 5.02005 5.13748 5.26075 5.30300 5.40469 5.45741 5.47448 5.55278 5.59630 5.77481 5.98625 6.02745 6.17693 6.33242 6.40311 6.52754 6.60614 6.65348 6.69947 6.83502 6.89974 7.01434 7.12541 7.31724 7.59825 7.64016 7.95161 8.20715 8.38744 8.63169 8.89783 9.53158 10.97420 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004545 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.842320 B = 6158.514482 C = 7419.529453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.316 6.316 3 C 0.050 3.950 4 C -0.162 4.162 5 C -0.143 4.143 6 C -0.079 4.079 7 C -0.551 4.551 8 S 2.409 3.591 9 C -0.664 4.664 10 O -0.919 6.919 11 O -0.938 6.938 12 C -0.159 4.159 13 C 0.220 3.780 14 N -0.713 5.713 15 C 0.144 3.856 16 C 0.043 3.957 17 C -0.492 4.492 18 H 0.061 0.939 19 C 0.075 3.925 20 N -0.866 5.866 21 Si 0.883 3.117 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.284 1.284 25 C -0.209 4.209 26 C -0.192 4.192 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.403 0.597 39 H 0.024 0.976 40 H 0.116 0.884 41 H 0.266 0.734 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 12.762 7.523 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.230 6.230 3 C 0.000 4.000 4 C -0.182 4.182 5 C -0.166 4.166 6 C -0.081 4.081 7 C -0.679 4.679 8 S 2.590 3.410 9 C -0.812 4.812 10 O -0.916 6.916 11 O -0.935 6.935 12 C -0.184 4.184 13 C 0.111 3.889 14 N -0.338 5.338 15 C 0.021 3.979 16 C 0.042 3.958 17 C -0.529 4.529 18 H 0.079 0.921 19 C -0.129 4.129 20 N -0.502 5.502 21 Si 0.710 3.290 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.211 1.211 25 C -0.246 4.246 26 C -0.230 4.230 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.238 0.762 39 H 0.042 0.958 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.721 12.303 6.567 16.449 hybrid contribution -0.380 0.073 -0.043 0.389 sum -9.101 12.376 6.524 16.690 Atomic orbital electron populations 1.22935 0.79181 1.03332 1.00796 1.86032 1.20595 1.26632 1.89722 1.18546 0.90587 0.84707 1.06113 1.20812 0.99211 0.91651 1.06479 1.20398 0.93026 0.97100 1.06028 1.18369 0.93247 0.90876 1.05654 1.29179 1.10011 1.04527 1.24180 1.08501 0.76277 0.77517 0.78669 1.30377 1.14630 1.24338 1.11897 1.93680 1.64276 1.61108 1.72507 1.93573 1.41026 1.85655 1.73231 1.20417 1.00267 0.89484 1.08274 1.17253 0.87005 0.88548 0.96084 1.44934 1.06773 1.04788 1.77272 1.21337 0.76792 0.98436 1.01330 1.19089 0.95560 0.90969 0.90139 1.20486 1.47654 0.96081 0.88633 0.92123 1.24887 0.93497 0.95494 0.98982 1.69884 1.37727 1.11900 1.30697 0.86682 0.78630 0.79205 0.84450 1.19724 1.20590 1.21069 1.22849 1.01655 0.99065 1.01059 1.22942 0.91539 1.02957 1.05607 0.93215 0.93027 0.88743 0.85704 0.86142 0.84662 0.84339 0.85372 0.85498 0.85697 0.84572 0.76249 0.95832 0.86662 0.92418 0.91377 0.90605 0.91676 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.32 -5.27 9.75 -19.78 -0.19 -5.46 16 3 C 0.05 0.88 6.70 -39.08 -0.26 0.62 16 4 C -0.16 -2.45 9.04 -39.47 -0.36 -2.81 16 5 C -0.14 -2.10 9.69 -39.56 -0.38 -2.49 16 6 C -0.08 -1.21 5.14 -104.62 -0.54 -1.75 16 7 C -0.55 -5.75 5.93 36.01 0.21 -5.54 16 8 S 2.41 29.25 5.34 -107.50 -0.57 28.67 16 9 C -0.66 -4.61 10.62 101.05 1.07 -3.54 16 10 O -0.92 -16.15 18.10 -57.83 -1.05 -17.20 16 11 O -0.94 -14.32 18.10 -57.83 -1.05 -15.37 16 12 C -0.16 -2.93 8.95 -39.41 -0.35 -3.28 16 13 C 0.22 4.33 6.66 -83.56 -0.56 3.78 16 14 N -0.71 -15.15 5.68 -58.49 -0.33 -15.48 16 15 C 0.14 3.33 4.62 -4.04 -0.02 3.31 16 16 C 0.04 1.05 1.71 -155.63 -0.27 0.78 16 17 C -0.49 -13.26 8.98 -34.44 -0.31 -13.57 16 18 H 0.06 1.65 7.87 -52.48 -0.41 1.24 16 19 C 0.08 2.06 5.12 -17.82 -0.09 1.97 16 20 N -0.87 -24.38 11.10 55.43 0.62 -23.77 16 21 Si 0.88 21.59 29.57 -169.99 -5.03 16.56 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.21 -4.43 9.80 -26.73 -0.26 -4.70 16 26 C -0.19 -4.30 9.89 -26.69 -0.26 -4.56 16 27 H 0.05 0.48 7.65 -51.93 -0.40 0.09 16 28 H 0.05 0.55 7.68 -51.93 -0.40 0.15 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.13 1.51 6.30 -52.48 -0.33 1.18 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 0.89 8.08 -51.92 -0.42 0.47 16 33 H 0.14 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.12 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.14 2.53 6.77 -52.49 -0.36 2.18 16 38 H 0.40 8.53 7.77 -40.82 -0.32 8.21 16 39 H 0.02 0.52 7.78 -51.92 -0.40 0.11 16 40 H 0.12 3.03 5.26 -51.93 -0.27 2.76 16 41 H 0.27 7.29 8.32 -40.82 -0.34 6.95 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 1.36 8.08 -51.93 -0.42 0.94 16 45 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -35.28 386.31 -9.83 -45.11 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.66 Total: 11.50 kcal Atomic # 6 Polarization: -29.01 SS G_CDS: -1.38 Total: -30.39 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.28 Total: -39.25 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -2.29 Total: -38.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 16 Polarization: 29.25 SS G_CDS: -0.57 Total: 28.67 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.28 -9.83 -45.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.572 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds