Wall clock time and date at job start Sat Apr 11 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36011 * 117.00168 * 2 1 4 4 C 1.38502 * 120.08170 * 0.27568 * 3 2 1 5 5 C 1.38278 * 120.01902 * 180.27132 * 4 3 2 6 6 C 1.38251 * 120.17978 * 359.72644 * 5 4 3 7 7 C 1.50702 * 119.92113 * 179.97438 * 6 5 4 8 8 S 1.81402 * 109.47444 * 270.02299 * 7 6 5 9 9 C 1.81395 * 101.92170 * 179.97438 * 8 7 6 10 10 O 1.42095 * 108.57773 * 294.48986 * 8 7 6 11 11 O 1.42102 * 108.57496 * 65.51282 * 8 7 6 12 12 C 1.38217 * 120.16055 * 359.97438 * 6 5 4 13 13 C 1.38723 * 119.98115 * 359.97438 * 12 6 5 14 14 N 1.39969 * 120.08946 * 180.02562 * 13 12 6 15 15 C 1.46500 * 120.00304 * 354.65231 * 14 13 12 16 16 C 1.52997 * 109.47521 * 184.84365 * 15 14 13 17 17 C 1.50699 * 115.54917 * 80.99672 * 16 15 14 18 18 H 1.08005 * 119.99789 * 219.77213 * 17 16 15 19 19 C 1.37875 * 120.00214 * 39.77209 * 17 16 15 20 20 N 1.31520 * 119.99917 * 16.75478 * 19 17 16 21 21 Si 1.86792 * 120.00326 * 196.75851 * 19 17 16 22 22 H 1.48507 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47332 * 119.99676 * 21 19 17 24 24 H 1.48494 * 109.47311 * 240.00086 * 21 19 17 25 25 C 1.52998 * 117.49694 * 295.33135 * 16 15 14 26 26 C 1.53001 * 60.03146 * 252.49401 * 25 16 15 27 27 H 1.09003 * 109.46651 * 299.99881 * 1 2 3 28 28 H 1.09001 * 109.46844 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.46753 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99053 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.90842 * 179.70048 * 5 4 3 32 32 H 1.09003 * 109.46940 * 30.02347 * 7 6 5 33 33 H 1.08998 * 109.47441 * 150.01936 * 7 6 5 34 34 H 1.09000 * 109.47002 * 60.00504 * 9 8 7 35 35 H 1.09000 * 109.47203 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47422 * 300.00381 * 9 8 7 37 37 H 1.08000 * 120.01060 * 180.02562 * 12 6 5 38 38 H 0.97005 * 119.99399 * 174.65718 * 14 13 12 39 39 H 1.09007 * 109.46557 * 64.84513 * 15 14 13 40 40 H 1.09004 * 109.47008 * 304.84713 * 15 14 13 41 41 H 0.96991 * 120.00257 * 184.98200 * 20 19 17 42 42 H 1.09005 * 117.49974 * 359.97438 * 25 16 15 43 43 H 1.09000 * 117.50078 * 144.99684 * 25 16 15 44 44 H 1.08997 * 117.49351 * 107.49867 * 26 25 16 45 45 H 1.08995 * 117.50117 * 252.52411 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.2939 2.3745 0.0058 5 6 1.9231 3.6059 0.0001 6 6 3.3035 3.6810 -0.0056 7 6 3.9831 5.0261 -0.0124 8 16 4.2484 5.5611 -1.7253 9 6 5.0596 7.1671 -1.4950 10 8 5.1704 4.6715 -2.3398 11 8 2.9823 5.7770 -2.3333 12 6 4.0619 2.5255 -0.0052 13 6 3.4377 1.2867 0.0016 14 7 4.2035 0.1150 0.0026 15 6 5.6611 0.1925 -0.1217 16 6 6.2410 -1.2203 -0.2146 17 6 6.1751 -1.8616 -1.5767 18 1 5.9321 -2.9100 -1.6688 19 6 6.4251 -1.1102 -2.7053 20 7 7.0324 0.0517 -2.6006 21 14 5.9011 -1.7422 -4.3832 22 1 5.2418 -3.0641 -4.2305 23 1 4.9489 -0.7830 -4.9983 24 1 7.0954 -1.8819 -5.2546 25 6 6.0798 -2.1315 1.0038 26 6 7.4519 -1.5468 0.6629 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2153 2.3194 0.0107 31 1 1.3344 4.5113 -0.0003 32 1 3.3548 5.7532 0.5021 33 1 4.9435 4.9506 0.4975 34 1 5.9883 7.0289 -0.9414 35 1 5.2791 7.6062 -2.4681 36 1 4.3993 7.8310 -0.9369 37 1 5.1401 2.5871 -0.0093 38 1 3.7689 -0.7483 0.0855 39 1 6.0738 0.6980 0.7515 40 1 5.9199 0.7513 -1.0211 41 1 7.1438 0.6130 -3.3837 42 1 5.5610 -1.7243 1.8718 43 1 5.9262 -3.1949 0.8203 44 1 7.8355 -0.7551 1.3064 45 1 8.2009 -2.2254 0.2547 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594708449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:21 Heat of formation + Delta-G solvation = -72.457939 kcal Electronic energy + Delta-G solvation = -28011.619119 eV Core-core repulsion = 24122.027441 eV Total energy + Delta-G solvation = -3889.591678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18373 -39.00741 -38.42355 -37.91137 -36.92215 -35.77425 -34.22479 -32.91753 -30.54179 -30.38082 -28.82559 -27.79136 -27.16291 -26.41459 -23.08620 -22.75151 -22.21556 -20.93683 -19.75738 -19.10665 -18.36896 -17.66914 -17.51239 -17.26511 -16.80099 -16.71968 -16.54701 -16.35887 -15.89533 -15.48542 -15.24607 -14.96526 -14.64030 -14.55390 -14.16053 -13.98218 -13.86558 -13.59222 -13.39230 -13.27155 -13.03416 -12.96634 -12.92054 -12.87646 -12.81195 -12.50923 -12.36374 -12.29408 -12.10823 -11.87205 -11.80602 -11.46471 -11.24989 -11.17944 -10.70114 -10.59773 -10.02018 -9.33419 -8.21525 -7.89938 -6.19158 -0.96301 0.47702 0.69514 1.33762 1.40138 1.48017 1.95721 2.39323 2.42610 2.67725 2.82545 2.95478 3.02908 3.16622 3.60144 3.67637 3.87138 4.11660 4.13865 4.21091 4.23821 4.33994 4.45355 4.45778 4.49932 4.52298 4.64972 4.69416 4.71949 4.76219 4.85649 4.92288 4.94314 4.98854 5.11562 5.17489 5.26956 5.40123 5.54202 5.58436 5.60536 5.89115 5.94440 6.34392 6.35860 6.72704 6.77985 7.10629 7.41579 8.86462 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009028 B = 0.004545 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3100.842320 B = 6158.514482 C = 7419.529453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.341 6.341 3 C 0.039 3.961 4 C -0.162 4.162 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.544 4.544 8 S 2.391 3.609 9 C -0.631 4.631 10 O -0.994 6.994 11 O -0.981 6.981 12 C -0.179 4.179 13 C 0.180 3.820 14 N -0.724 5.724 15 C 0.162 3.838 16 C 0.011 3.989 17 C -0.502 4.502 18 H 0.052 0.948 19 C 0.033 3.967 20 N -0.888 5.888 21 Si 0.933 3.067 22 H -0.265 1.265 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.181 4.181 26 C -0.190 4.190 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.112 0.888 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.165 0.835 37 H 0.119 0.881 38 H 0.398 0.602 39 H 0.027 0.973 40 H 0.080 0.920 41 H 0.260 0.740 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 15.117 9.153 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.256 6.256 3 C -0.010 4.010 4 C -0.181 4.181 5 C -0.161 4.161 6 C -0.090 4.090 7 C -0.673 4.673 8 S 2.581 3.419 9 C -0.784 4.784 10 O -0.991 6.991 11 O -0.978 6.978 12 C -0.204 4.204 13 C 0.074 3.926 14 N -0.351 5.351 15 C 0.038 3.962 16 C 0.010 3.990 17 C -0.539 4.539 18 H 0.070 0.930 19 C -0.168 4.168 20 N -0.525 5.525 21 Si 0.759 3.241 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.218 4.218 26 C -0.229 4.229 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.203 0.797 33 H 0.180 0.820 34 H 0.171 0.829 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.137 0.863 38 H 0.232 0.768 39 H 0.045 0.955 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.409 14.623 8.180 19.725 hybrid contribution 0.045 -0.515 -0.472 0.699 sum -10.365 14.108 7.708 19.128 Atomic orbital electron populations 1.23270 0.76660 1.05115 1.02107 1.85999 1.23285 1.26557 1.89760 1.18721 0.90133 0.85997 1.06152 1.21257 1.00842 0.90965 1.05078 1.20952 0.93092 0.98340 1.03713 1.18820 0.93911 0.92096 1.04221 1.29184 1.12012 1.02967 1.23133 1.08436 0.75260 0.79203 0.79039 1.30068 1.15612 1.19111 1.13599 1.93605 1.65510 1.65054 1.74908 1.93513 1.42836 1.86664 1.74790 1.20548 0.99912 0.90610 1.09338 1.17653 0.88272 0.88400 0.98261 1.44680 1.05790 1.05236 1.79360 1.20873 0.78340 0.97274 0.99664 1.19162 0.97615 0.92163 0.90066 1.20718 1.47051 0.95788 0.90313 0.92983 1.25475 0.93868 0.95814 1.01642 1.70006 1.38923 1.12743 1.30877 0.85900 0.78173 0.78648 0.81385 1.18909 1.21641 1.20435 1.22811 1.00363 0.98723 0.99932 1.22925 0.91565 1.03231 1.05172 0.91140 0.92275 0.86937 0.82433 0.82565 0.79694 0.82023 0.82864 0.84716 0.81700 0.86283 0.76775 0.95527 0.90255 0.93031 0.89513 0.90213 0.90278 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.34 -11.38 9.75 -93.68 -0.91 -12.29 16 3 C 0.04 1.38 6.70 22.59 0.15 1.54 16 4 C -0.16 -4.62 9.04 22.34 0.20 -4.41 16 5 C -0.14 -3.75 9.69 22.28 0.22 -3.54 16 6 C -0.09 -2.61 5.14 -19.87 -0.10 -2.72 16 7 C -0.54 -9.88 5.93 71.24 0.42 -9.45 16 8 S 2.39 55.59 5.34 -56.49 -0.30 55.29 16 9 C -0.63 -6.09 10.62 113.37 1.20 -4.89 16 10 O -0.99 -36.78 18.10 -127.37 -2.31 -39.08 16 11 O -0.98 -29.26 18.10 -127.37 -2.30 -31.57 16 12 C -0.18 -6.82 8.95 22.38 0.20 -6.62 16 13 C 0.18 7.37 6.66 38.22 0.25 7.63 16 14 N -0.72 -32.26 5.68 -338.97 -1.93 -34.18 16 15 C 0.16 7.90 4.62 86.38 0.40 8.30 16 16 C 0.01 0.53 1.71 -52.91 -0.09 0.44 16 17 C -0.50 -27.90 8.98 25.60 0.23 -27.67 16 18 H 0.05 2.90 7.87 -2.91 -0.02 2.88 16 19 C 0.03 1.89 5.12 84.65 0.43 2.32 16 20 N -0.89 -52.41 11.10 21.45 0.24 -52.17 16 21 Si 0.93 45.81 29.57 68.60 2.03 47.83 16 22 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 C -0.18 -7.64 9.80 30.59 0.30 -7.34 16 26 C -0.19 -8.59 9.89 30.62 0.30 -8.29 16 27 H 0.07 1.19 7.65 -2.39 -0.02 1.18 16 28 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 29 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.16 3.30 6.30 -2.91 -0.02 3.29 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.19 1.44 8.08 -2.39 -0.02 1.42 16 33 H 0.16 2.19 8.08 -2.39 -0.02 2.17 16 34 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.12 4.78 6.77 -2.91 -0.02 4.76 16 38 H 0.40 17.69 7.77 -92.70 -0.72 16.97 16 39 H 0.03 1.23 7.78 -2.38 -0.02 1.21 16 40 H 0.08 4.46 5.26 -2.39 -0.01 4.45 16 41 H 0.26 15.06 8.32 -92.72 -0.77 14.29 16 42 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 43 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.08 3.30 8.08 -2.39 -0.02 3.28 16 45 H 0.07 3.31 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -83.31 386.31 0.03 -83.28 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.28 Total: 36.01 kcal Atomic # 6 Polarization: -58.34 SS G_CDS: 5.24 Total: -53.11 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.69 Total: -86.36 kcal Atomic # 8 Polarization: -77.42 SS G_CDS: -5.52 Total: -82.94 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.30 Total: 55.29 kcal Total: -83.31 0.03 -83.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594708449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.818 kcal (2) G-P(sol) polarization free energy of solvation -83.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds