Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47422 * 2 1 4 4 N 1.46503 * 109.47062 * 239.99906 * 2 1 3 5 5 S 1.65597 * 119.99693 * 93.26849 * 4 2 1 6 6 O 1.42096 * 106.40163 * 311.30935 * 5 4 2 7 7 O 1.42105 * 106.40009 * 178.39395 * 5 4 2 8 8 C 1.76202 * 107.21985 * 64.85497 * 5 4 2 9 9 C 1.37639 * 120.12527 * 245.63727 * 8 5 4 10 10 C 1.38616 * 120.24540 * 180.02562 * 9 8 5 11 11 C 1.38653 * 120.50303 * 359.97438 * 10 9 8 12 12 C 1.37596 * 120.24795 * 0.02562 * 11 10 9 13 13 C 1.40697 * 120.12957 * 65.65434 * 8 5 4 14 14 C 1.41402 * 120.24347 * 359.96058 * 13 8 5 15 15 H 1.08001 * 119.99374 * 334.32609 * 14 13 8 16 16 C 1.39938 * 120.00131 * 154.32837 * 14 13 8 17 17 N 1.30826 * 120.00202 * 341.86482 * 16 14 13 18 18 Si 1.86800 * 120.00132 * 161.86317 * 16 14 13 19 19 H 1.48503 * 109.46873 * 60.00145 * 18 16 14 20 20 H 1.48501 * 109.47116 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47287 * 300.00281 * 18 16 14 22 22 C 1.53009 * 109.47097 * 120.00576 * 2 1 3 23 23 H 1.09008 * 109.47290 * 300.01908 * 22 2 1 24 24 C 1.53088 * 109.48145 * 180.02562 * 22 2 1 25 25 C 1.53176 * 109.16453 * 182.40741 * 24 22 2 26 26 C 1.53171 * 109.03745 * 56.97353 * 25 24 22 27 27 C 1.53093 * 109.16583 * 303.02238 * 26 25 24 28 28 O 1.42901 * 109.48306 * 60.05337 * 22 2 1 29 29 H 1.08997 * 109.46844 * 299.99757 * 1 2 3 30 30 H 1.09001 * 109.46813 * 59.99934 * 1 2 3 31 31 H 1.08998 * 109.46935 * 179.97438 * 1 2 3 32 32 H 0.97002 * 120.00520 * 273.26651 * 4 2 1 33 33 H 1.07998 * 119.87436 * 0.02562 * 9 8 5 34 34 H 1.07999 * 119.74277 * 180.02562 * 10 9 8 35 35 H 1.07999 * 119.87304 * 180.28343 * 11 10 9 36 36 H 1.08004 * 120.12658 * 180.02562 * 12 11 10 37 37 H 0.96996 * 120.00273 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.52234 * 302.30999 * 24 22 2 39 39 H 1.09004 * 109.52530 * 62.43042 * 24 22 2 40 40 H 1.08998 * 109.54611 * 176.84985 * 25 24 22 41 41 H 1.09005 * 109.53912 * 297.10610 * 25 24 22 42 42 H 1.09001 * 109.52233 * 62.92987 * 26 25 24 43 43 H 1.08997 * 109.52432 * 183.11685 * 26 25 24 44 44 H 1.09000 * 109.47972 * 177.58978 * 27 26 25 45 45 H 1.08998 * 109.48263 * 297.61701 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.3714 0.1727 -2.5645 6 8 1.2576 1.0227 -2.8012 7 8 2.8497 -0.7656 -3.5186 8 6 3.7295 1.2274 -2.1799 9 6 3.5634 2.5937 -2.1758 10 6 4.6302 3.4258 -1.8742 11 6 5.8746 2.8936 -1.5730 12 6 6.0636 1.5307 -1.5710 13 6 4.9878 0.6762 -1.8761 14 6 5.1701 -0.7260 -1.8767 15 1 4.3297 -1.3798 -1.6955 16 6 6.4392 -1.2666 -2.1121 17 7 7.3682 -0.5351 -2.6721 18 14 6.8070 -3.0325 -1.6267 19 1 5.8878 -3.9466 -2.3510 20 1 8.2113 -3.3609 -1.9806 21 1 6.6140 -3.1940 -0.1632 22 6 2.0400 -0.7214 1.2492 23 1 1.6764 -0.2079 2.1394 24 6 3.5709 -0.7210 1.2498 25 6 4.0735 -1.4966 2.4713 26 6 3.4925 -2.9134 2.4373 27 6 1.9646 -2.8291 2.3909 28 8 1.5649 -2.0691 1.2487 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1349 -1.6536 -1.1867 33 1 2.5984 3.0191 -2.4086 34 1 4.4908 4.4968 -1.8730 35 1 6.6976 3.5512 -1.3349 36 1 7.0336 1.1182 -1.3357 37 1 8.2480 -0.9097 -2.8349 38 1 3.9356 -1.1981 0.3401 39 1 3.9349 0.3055 1.2938 40 1 5.1620 -1.5481 2.4480 41 1 3.7506 -0.9918 3.3819 42 1 3.8556 -3.4348 1.5516 43 1 3.8004 -3.4550 3.3317 44 1 1.5470 -3.8337 2.3234 45 1 1.5997 -2.3438 3.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -121.463211 kcal Electronic energy + Delta-G solvation = -29833.743943 eV Core-core repulsion = 25942.027237 eV Total energy + Delta-G solvation = -3891.716706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.46688 -37.59185 -36.24199 -35.55863 -34.75967 -33.92985 -33.42608 -30.63894 -30.26297 -29.57315 -29.01332 -25.56511 -25.12494 -23.39320 -21.64728 -21.25293 -20.92299 -20.00366 -18.64022 -17.71754 -16.91861 -16.55727 -16.02350 -15.77536 -15.40976 -14.78677 -14.47276 -14.37653 -14.32595 -13.97763 -13.62932 -13.29064 -13.20839 -12.99183 -12.76758 -12.46538 -12.43143 -11.92347 -11.73053 -11.56924 -11.33433 -11.31215 -11.17063 -11.14901 -11.00608 -10.97668 -10.93736 -10.81083 -10.64694 -10.54676 -10.33328 -10.01608 -9.90232 -9.44737 -9.41182 -9.20392 -8.71438 -8.03264 -7.64534 -7.10013 -4.75579 1.60051 2.35222 2.72109 2.93143 2.96231 3.10564 3.74049 3.81791 4.04865 4.36825 4.76354 4.83459 4.96385 5.03553 5.14580 5.25007 5.27546 5.36503 5.53534 5.56223 5.60523 5.66430 5.75282 5.83633 5.90717 6.04314 6.05758 6.13604 6.17920 6.23686 6.28722 6.37514 6.40495 6.53335 6.63867 6.74070 6.81936 6.94874 7.08702 7.30000 7.37949 7.49722 7.60101 7.74534 7.81078 7.88857 8.27791 8.47402 8.64470 9.84127 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008999 B = 0.007317 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.636357 B = 3825.953902 C = 5267.192162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.094 0.906 4 N -1.111 6.111 5 S 2.697 3.303 6 O -0.998 6.998 7 O -0.966 6.966 8 C -0.779 4.779 9 C -0.001 4.001 10 C -0.254 4.254 11 C -0.075 4.075 12 C -0.162 4.162 13 C 0.190 3.810 14 C -0.441 4.441 15 H 0.089 0.911 16 C 0.084 3.916 17 N -0.767 5.767 18 Si 0.904 3.096 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.257 1.257 22 C 0.090 3.910 23 H 0.061 0.939 24 C -0.159 4.159 25 C -0.119 4.119 26 C -0.158 4.158 27 C 0.065 3.935 28 O -0.373 6.373 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.289 0.711 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.902 -3.016 10.995 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.061 3.939 3 H 0.112 0.888 4 N -0.867 5.867 5 S 2.795 3.205 6 O -0.988 6.988 7 O -0.957 6.957 8 C -0.875 4.875 9 C -0.021 4.021 10 C -0.274 4.274 11 C -0.094 4.094 12 C -0.182 4.182 13 C 0.185 3.815 14 C -0.468 4.468 15 H 0.107 0.893 16 C -0.138 4.138 17 N -0.390 5.390 18 Si 0.727 3.273 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.181 1.181 22 C 0.031 3.969 23 H 0.079 0.921 24 C -0.196 4.196 25 C -0.157 4.157 26 C -0.196 4.196 27 C -0.012 4.012 28 O -0.292 6.292 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.250 0.750 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.272 -3.000 9.929 11.636 hybrid contribution 1.292 -0.637 0.854 1.675 sum -3.980 -3.637 10.783 12.056 Atomic orbital electron populations 1.22278 0.95203 1.02907 1.02355 1.20628 0.94190 0.95390 0.83647 0.88850 1.55655 1.82581 1.19636 1.28875 1.01192 0.73615 0.73298 0.72441 1.93442 1.52270 1.68669 1.84432 1.93546 1.81750 1.62447 1.57937 1.29847 1.15989 1.06938 1.34686 1.20256 0.97362 0.91941 0.92507 1.20453 0.94362 0.97337 1.15291 1.20863 0.95624 0.95394 0.97523 1.21415 0.99745 0.92117 1.04909 1.16917 0.88956 0.92675 0.82949 1.19808 0.95286 0.91677 1.40063 0.89322 1.25929 0.95382 1.00797 0.91717 1.69806 1.04641 1.38616 1.25908 0.86376 0.78604 0.81654 0.80636 1.17976 1.19952 1.18106 1.22383 0.94013 0.83231 0.97284 0.92092 1.22335 0.94907 1.02124 1.00273 1.21552 1.00926 0.95100 0.98125 1.22205 0.96681 0.98080 1.02627 1.22492 0.94040 0.96007 0.88687 1.87891 1.74383 1.23372 1.43570 0.92416 0.91096 0.91566 0.75024 0.87499 0.88884 0.89003 0.86210 0.90032 0.88325 0.90544 0.91481 0.92567 0.90854 0.91538 0.89330 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 9.37 37.16 0.35 -2.00 16 2 C 0.17 2.60 2.60 -67.92 -0.18 2.42 16 3 H 0.09 1.45 7.84 -51.93 -0.41 1.04 16 4 N -1.11 -19.66 3.86 -4.89 -0.02 -19.68 16 5 S 2.70 58.75 4.88 -107.50 -0.52 58.22 16 6 O -1.00 -22.49 16.05 -57.17 -0.92 -23.41 16 7 O -0.97 -24.26 16.46 -57.17 -0.94 -25.20 16 8 C -0.78 -18.10 5.77 -38.87 -0.22 -18.32 16 9 C 0.00 -0.02 9.54 -39.66 -0.38 -0.40 16 10 C -0.25 -5.43 10.05 -39.29 -0.39 -5.83 16 11 C -0.08 -1.64 10.02 -39.66 -0.40 -2.04 16 12 C -0.16 -3.86 8.69 -38.88 -0.34 -4.20 16 13 C 0.19 4.62 5.56 -106.82 -0.59 4.03 16 14 C -0.44 -10.56 6.72 -37.74 -0.25 -10.81 16 15 H 0.09 2.02 4.88 -52.49 -0.26 1.76 16 16 C 0.08 1.96 5.12 -17.34 -0.09 1.87 16 17 N -0.77 -18.43 11.06 55.55 0.61 -17.81 16 18 Si 0.90 17.45 29.60 -169.99 -5.03 12.42 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 22 C 0.09 1.23 2.43 -26.68 -0.06 1.17 16 23 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 24 C -0.16 -2.37 5.29 -26.59 -0.14 -2.52 16 25 C -0.12 -1.52 6.03 -26.55 -0.16 -1.68 16 26 C -0.16 -1.83 6.14 -26.59 -0.16 -2.00 16 27 C 0.06 0.72 6.84 37.21 0.25 0.97 16 28 O -0.37 -5.10 9.23 -35.23 -0.33 -5.43 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.09 7.45 -51.93 -0.39 0.70 16 31 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 32 H 0.42 7.02 8.15 -34.47 -0.28 6.74 16 33 H 0.11 2.21 7.32 -52.49 -0.38 1.82 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.88 6.27 -52.48 -0.33 2.55 16 37 H 0.29 6.26 8.30 -40.82 -0.34 5.93 16 38 H 0.10 1.71 5.61 -51.93 -0.29 1.42 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -29.17 365.50 -10.93 -40.10 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -6.52 Total: 14.62 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: -2.77 Total: -39.33 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.60 Total: -37.49 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.18 Total: -54.04 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: 58.75 SS G_CDS: -0.52 Total: 58.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.17 -10.93 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.367 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds