Wall clock time and date at job start Sat Apr 11 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99593 * 2 1 4 4 C 1.52993 * 110.02036 * 305.57375 * 3 2 1 5 5 N 1.46507 * 109.47186 * 295.60171 * 4 3 2 6 6 S 1.65599 * 119.99595 * 163.22747 * 5 4 3 7 7 O 1.42097 * 106.40463 * 311.61781 * 6 5 4 8 8 O 1.42108 * 106.39647 * 178.69956 * 6 5 4 9 9 C 1.76204 * 107.22072 * 65.16247 * 6 5 4 10 10 C 1.37643 * 120.12755 * 112.98366 * 9 6 5 11 11 C 1.38611 * 120.24195 * 180.31955 * 10 9 6 12 12 C 1.38652 * 120.50444 * 359.67575 * 11 10 9 13 13 C 1.37598 * 120.25086 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.12724 * 292.68183 * 9 6 5 15 15 C 1.41401 * 120.24226 * 359.97438 * 14 9 6 16 16 H 1.08003 * 119.99824 * 317.75009 * 15 14 9 17 17 C 1.39946 * 120.00200 * 137.75224 * 15 14 9 18 18 N 1.30825 * 119.99837 * 153.66623 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 333.66877 * 17 15 14 20 20 H 1.48505 * 109.46673 * 268.17598 * 19 17 15 21 21 H 1.48499 * 109.47169 * 28.17731 * 19 17 15 22 22 H 1.48498 * 109.46971 * 148.18151 * 19 17 15 23 23 C 1.54266 * 110.03322 * 66.96768 * 3 2 1 24 24 C 1.54968 * 104.15807 * 95.75002 * 23 3 2 25 25 C 1.54882 * 102.77990 * 37.89120 * 24 23 3 26 26 C 1.53881 * 110.02778 * 184.18431 * 3 2 1 27 27 H 1.09001 * 109.46811 * 185.95124 * 1 2 3 28 28 H 1.08998 * 109.47089 * 305.94893 * 1 2 3 29 29 H 1.09005 * 109.47386 * 65.94644 * 1 2 3 30 30 H 1.09008 * 109.47353 * 175.60488 * 4 3 2 31 31 H 1.08996 * 109.47322 * 55.60239 * 4 3 2 32 32 H 0.96992 * 120.00081 * 343.22488 * 5 4 3 33 33 H 1.07990 * 119.87817 * 0.02562 * 10 9 6 34 34 H 1.08004 * 119.74623 * 179.69929 * 11 10 9 35 35 H 1.08003 * 119.87956 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.13151 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99916 * 180.02562 * 18 17 15 38 38 H 1.08994 * 110.48562 * 214.39732 * 23 3 2 39 39 H 1.09002 * 110.48526 * 337.04199 * 23 3 2 40 40 H 1.09003 * 110.72300 * 279.57129 * 24 23 3 41 41 H 1.09003 * 110.76206 * 156.22716 * 24 23 3 42 42 H 1.08997 * 110.48956 * 203.40779 * 25 24 23 43 43 H 1.09000 * 110.48931 * 80.75888 * 25 24 23 44 44 H 1.08994 * 110.03640 * 359.95109 * 26 3 2 45 45 H 1.09002 * 110.03433 * 121.38949 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4592 2.1241 -1.1692 5 7 1.8723 1.5094 -2.4333 6 16 1.1009 1.9140 -3.8417 7 8 -0.2922 1.8233 -3.5766 8 8 1.7445 1.1824 -4.8761 9 6 1.4387 3.6154 -4.1513 10 6 2.2099 3.9813 -5.2311 11 6 2.4827 5.3186 -5.4731 12 6 1.9780 6.3024 -4.6366 13 6 1.1988 5.9602 -3.5553 14 6 0.9161 4.6056 -3.2993 15 6 0.1168 4.2420 -2.1909 16 1 -0.6337 3.4725 -2.2957 17 6 0.2984 4.8793 -0.9583 18 7 -0.6942 4.9566 -0.1095 19 14 1.9578 5.6195 -0.5250 20 1 2.7746 4.6131 0.1998 21 1 2.6598 6.0235 -1.7696 22 1 1.7580 6.8103 0.3395 23 6 1.7070 2.0189 1.3338 24 6 2.9654 1.7557 2.1990 25 6 4.1169 1.8546 1.1679 26 6 3.5417 1.2006 -0.1055 27 1 -0.3633 -1.0222 0.1066 28 1 -0.3633 0.6033 0.8319 29 1 -0.3634 0.4189 -0.9385 30 1 1.8478 3.1412 -1.1158 31 1 0.3708 2.1477 -1.1153 32 1 2.5975 0.8655 -2.4452 33 1 2.6078 3.2234 -5.8895 34 1 3.0927 5.5963 -6.3200 35 1 2.1965 7.3413 -4.8348 36 1 0.8063 6.7282 -2.9052 37 1 -0.5685 5.3986 0.7448 38 1 1.5722 3.0883 1.1723 39 1 0.8229 1.5886 1.8042 40 1 2.9278 0.7603 2.6418 41 1 3.0708 2.5189 2.9701 42 1 4.9906 1.3047 1.5177 43 1 4.3717 2.8975 0.9794 44 1 3.8418 0.1540 -0.1558 45 1 3.8925 1.7330 -0.9896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601423051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:48 Heat of formation + Delta-G solvation = -103.712714 kcal Electronic energy + Delta-G solvation = -30178.579401 eV Core-core repulsion = 26287.632414 eV Total energy + Delta-G solvation = -3890.946986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.58367 -37.92114 -36.34598 -35.47285 -34.91193 -34.39944 -33.60415 -30.74158 -30.10316 -28.76617 -28.52508 -26.34539 -25.52450 -23.75336 -22.00759 -21.22116 -20.63191 -19.38599 -18.51051 -17.85369 -17.28053 -16.55125 -16.32355 -15.64158 -15.34802 -15.28656 -14.80025 -14.44567 -14.23980 -14.19422 -13.66218 -13.49163 -13.25708 -13.13592 -12.93322 -12.53424 -12.19951 -11.99118 -11.85179 -11.58757 -11.38957 -11.29468 -11.22419 -11.17466 -11.09574 -11.05218 -10.94523 -10.77875 -10.73470 -10.50636 -10.25841 -10.18743 -9.99739 -9.50596 -9.40367 -9.10326 -8.66701 -8.25687 -7.72526 -7.25005 -4.86461 1.46982 2.03461 2.45584 2.84396 2.92969 3.02962 3.72319 3.86552 4.12172 4.15799 4.60156 4.72484 4.73436 4.99441 5.01615 5.27759 5.47818 5.52572 5.56457 5.69706 5.70173 5.79797 5.80048 5.87304 5.91828 5.94158 5.99043 6.07128 6.14019 6.14369 6.18281 6.25152 6.36867 6.42987 6.43818 6.46252 6.60994 6.70910 6.90883 7.04819 7.20238 7.41272 7.52235 7.54929 7.70003 7.79319 8.16141 8.30235 8.50218 9.72359 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.006920 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.209012 B = 4045.041753 C = 5039.181646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.375 6.375 3 C 0.104 3.896 4 C 0.105 3.895 5 N -1.114 6.114 6 S 2.707 3.293 7 O -0.968 6.968 8 O -0.997 6.997 9 C -0.762 4.762 10 C 0.006 3.994 11 C -0.245 4.245 12 C -0.059 4.059 13 C -0.198 4.198 14 C 0.165 3.835 15 C -0.494 4.494 16 H 0.134 0.866 17 C 0.102 3.898 18 N -0.770 5.770 19 Si 0.845 3.155 20 H -0.249 1.249 21 H -0.223 1.223 22 H -0.274 1.274 23 C -0.150 4.150 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.408 0.592 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.289 0.711 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 -3.069 5.266 9.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.294 6.294 3 C 0.063 3.937 4 C -0.020 4.020 5 N -0.872 5.872 6 S 2.803 3.197 7 O -0.958 6.958 8 O -0.988 6.988 9 C -0.855 4.855 10 C -0.014 4.014 11 C -0.265 4.265 12 C -0.078 4.078 13 C -0.218 4.218 14 C 0.160 3.840 15 C -0.522 4.522 16 H 0.151 0.849 17 C -0.121 4.121 18 N -0.392 5.392 19 Si 0.667 3.333 20 H -0.174 1.174 21 H -0.145 1.145 22 H -0.199 1.199 23 C -0.188 4.188 24 C -0.156 4.156 25 C -0.162 4.162 26 C -0.154 4.154 27 H 0.098 0.902 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.241 0.759 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.982 -3.653 5.021 8.622 hybrid contribution 0.956 1.321 0.462 1.695 sum 6.938 -2.332 5.483 9.145 Atomic orbital electron populations 1.22862 0.81398 1.02003 1.01526 1.87887 1.19656 1.26926 1.94967 1.22493 0.93689 0.83514 0.94023 1.22482 1.02072 0.95882 0.81613 1.55415 1.52368 1.57068 1.22353 1.00899 0.73475 0.73998 0.71287 1.93496 1.30937 1.86996 1.84347 1.93462 1.77336 1.72261 1.55735 1.30160 1.21069 1.21960 1.12339 1.20405 0.91571 0.96122 0.93309 1.20575 1.09498 0.93104 1.03308 1.20903 0.94745 0.97620 0.94513 1.21363 1.04931 0.96066 0.99408 1.17108 0.86271 0.90366 0.90225 1.20213 1.17548 1.21369 0.93039 0.84897 1.26050 0.97784 0.92001 0.96290 1.69789 1.31073 1.30023 1.08280 0.87245 0.84320 0.80103 0.81647 1.17443 1.14513 1.19871 1.22990 0.98704 1.01597 0.95512 1.22439 0.94521 1.01380 0.97307 1.22371 0.97869 1.00853 0.95090 1.22201 0.92306 1.02097 0.98823 0.90202 0.93738 0.92468 0.90134 0.88124 0.75890 0.86811 0.88073 0.88276 0.87807 0.90000 0.90315 0.90611 0.91321 0.91785 0.91520 0.91499 0.90315 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.10 101.05 1.02 1.30 16 2 O -0.38 -6.08 10.23 -35.23 -0.36 -6.44 16 3 C 0.10 1.67 0.73 -89.50 -0.07 1.60 16 4 C 0.11 1.98 2.39 -4.04 -0.01 1.97 16 5 N -1.11 -20.53 5.60 -10.61 -0.06 -20.59 16 6 S 2.71 58.12 5.44 -107.50 -0.58 57.54 16 7 O -0.97 -23.31 15.06 -57.17 -0.86 -24.17 16 8 O -1.00 -22.21 16.97 -57.17 -0.97 -23.18 16 9 C -0.76 -17.17 5.95 -38.87 -0.23 -17.41 16 10 C 0.01 0.12 9.54 -39.66 -0.38 -0.26 16 11 C -0.24 -4.87 10.05 -39.29 -0.39 -5.26 16 12 C -0.06 -1.19 10.02 -39.66 -0.40 -1.59 16 13 C -0.20 -4.40 6.84 -38.88 -0.27 -4.66 16 14 C 0.16 3.87 4.62 -106.82 -0.49 3.38 16 15 C -0.49 -11.84 5.15 -37.74 -0.19 -12.04 16 16 H 0.13 3.50 5.35 -52.48 -0.28 3.22 16 17 C 0.10 2.29 4.26 -17.34 -0.07 2.22 16 18 N -0.77 -17.55 13.93 55.55 0.77 -16.77 16 19 Si 0.85 16.73 23.60 -169.99 -4.01 12.72 16 20 H -0.25 -4.54 6.37 56.52 0.36 -4.18 16 21 H -0.22 -4.57 5.53 56.52 0.31 -4.26 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.15 -2.28 5.88 -25.03 -0.15 -2.43 16 24 C -0.12 -1.51 6.91 -24.70 -0.17 -1.68 16 25 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 26 C -0.12 -1.64 5.51 -25.61 -0.14 -1.78 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.65 6.29 -51.93 -0.33 0.32 16 29 H 0.06 1.00 6.64 -51.93 -0.34 0.65 16 30 H 0.08 1.58 3.24 -51.92 -0.17 1.41 16 31 H 0.10 2.09 4.38 -51.93 -0.23 1.86 16 32 H 0.41 6.49 7.58 -34.47 -0.26 6.23 16 33 H 0.11 2.21 7.32 -52.49 -0.38 1.83 16 34 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 36 H 0.10 2.22 6.93 -52.49 -0.36 1.86 16 37 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 38 H 0.08 1.31 6.22 -51.93 -0.32 0.98 16 39 H 0.08 1.11 6.23 -51.93 -0.32 0.78 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.03 7.95 -51.93 -0.41 0.61 16 45 H 0.08 1.12 7.01 -51.93 -0.36 0.76 16 LS Contribution 344.89 15.07 5.20 5.20 Total: -1.00 -27.73 344.89 -9.00 -36.73 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -6.00 Total: 17.34 kcal Atomic # 6 Polarization: -36.25 SS G_CDS: -2.11 Total: -38.36 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.71 Total: -37.37 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -2.19 Total: -53.80 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -4.01 Total: 12.72 kcal Atomic # 16 Polarization: 58.12 SS G_CDS: -0.58 Total: 57.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.73 -9.00 -36.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.983 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds