Wall clock time and date at job start Sat Apr 11 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99593 * 2 1 4 4 C 1.52993 * 110.02036 * 305.57375 * 3 2 1 5 5 N 1.46507 * 109.47186 * 295.60171 * 4 3 2 6 6 S 1.65599 * 119.99595 * 163.22747 * 5 4 3 7 7 O 1.42097 * 106.40463 * 311.61781 * 6 5 4 8 8 O 1.42108 * 106.39647 * 178.69956 * 6 5 4 9 9 C 1.76204 * 107.22072 * 65.16247 * 6 5 4 10 10 C 1.37643 * 120.12755 * 112.98366 * 9 6 5 11 11 C 1.38611 * 120.24195 * 180.31955 * 10 9 6 12 12 C 1.38652 * 120.50444 * 359.67575 * 11 10 9 13 13 C 1.37598 * 120.25086 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.12724 * 292.68183 * 9 6 5 15 15 C 1.41401 * 120.24226 * 359.97438 * 14 9 6 16 16 H 1.08003 * 119.99824 * 317.75009 * 15 14 9 17 17 C 1.39946 * 120.00200 * 137.75224 * 15 14 9 18 18 N 1.30825 * 119.99837 * 153.66623 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 333.66877 * 17 15 14 20 20 H 1.48505 * 109.46673 * 268.17598 * 19 17 15 21 21 H 1.48499 * 109.47169 * 28.17731 * 19 17 15 22 22 H 1.48498 * 109.46971 * 148.18151 * 19 17 15 23 23 C 1.54266 * 110.03322 * 66.96768 * 3 2 1 24 24 C 1.54968 * 104.15807 * 95.75002 * 23 3 2 25 25 C 1.54882 * 102.77990 * 37.89120 * 24 23 3 26 26 C 1.53881 * 110.02778 * 184.18431 * 3 2 1 27 27 H 1.09001 * 109.46811 * 185.95124 * 1 2 3 28 28 H 1.08998 * 109.47089 * 305.94893 * 1 2 3 29 29 H 1.09005 * 109.47386 * 65.94644 * 1 2 3 30 30 H 1.09008 * 109.47353 * 175.60488 * 4 3 2 31 31 H 1.08996 * 109.47322 * 55.60239 * 4 3 2 32 32 H 0.96992 * 120.00081 * 343.22488 * 5 4 3 33 33 H 1.07990 * 119.87817 * 0.02562 * 10 9 6 34 34 H 1.08004 * 119.74623 * 179.69929 * 11 10 9 35 35 H 1.08003 * 119.87956 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.13151 * 180.02562 * 13 12 11 37 37 H 0.96998 * 119.99916 * 180.02562 * 18 17 15 38 38 H 1.08994 * 110.48562 * 214.39732 * 23 3 2 39 39 H 1.09002 * 110.48526 * 337.04199 * 23 3 2 40 40 H 1.09003 * 110.72300 * 279.57129 * 24 23 3 41 41 H 1.09003 * 110.76206 * 156.22716 * 24 23 3 42 42 H 1.08997 * 110.48956 * 203.40779 * 25 24 23 43 43 H 1.09000 * 110.48931 * 80.75888 * 25 24 23 44 44 H 1.08994 * 110.03640 * 359.95109 * 26 3 2 45 45 H 1.09002 * 110.03433 * 121.38949 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4592 2.1241 -1.1692 5 7 1.8723 1.5094 -2.4333 6 16 1.1009 1.9140 -3.8417 7 8 -0.2922 1.8233 -3.5766 8 8 1.7445 1.1824 -4.8761 9 6 1.4387 3.6154 -4.1513 10 6 2.2099 3.9813 -5.2311 11 6 2.4827 5.3186 -5.4731 12 6 1.9780 6.3024 -4.6366 13 6 1.1988 5.9602 -3.5553 14 6 0.9161 4.6056 -3.2993 15 6 0.1168 4.2420 -2.1909 16 1 -0.6337 3.4725 -2.2957 17 6 0.2984 4.8793 -0.9583 18 7 -0.6942 4.9566 -0.1095 19 14 1.9578 5.6195 -0.5250 20 1 2.7746 4.6131 0.1998 21 1 2.6598 6.0235 -1.7696 22 1 1.7580 6.8103 0.3395 23 6 1.7070 2.0189 1.3338 24 6 2.9654 1.7557 2.1990 25 6 4.1169 1.8546 1.1679 26 6 3.5417 1.2006 -0.1055 27 1 -0.3633 -1.0222 0.1066 28 1 -0.3633 0.6033 0.8319 29 1 -0.3634 0.4189 -0.9385 30 1 1.8478 3.1412 -1.1158 31 1 0.3708 2.1477 -1.1153 32 1 2.5975 0.8655 -2.4452 33 1 2.6078 3.2234 -5.8895 34 1 3.0927 5.5963 -6.3200 35 1 2.1965 7.3413 -4.8348 36 1 0.8063 6.7282 -2.9052 37 1 -0.5685 5.3986 0.7448 38 1 1.5722 3.0883 1.1723 39 1 0.8229 1.5886 1.8042 40 1 2.9278 0.7603 2.6418 41 1 3.0708 2.5189 2.9701 42 1 4.9906 1.3047 1.5177 43 1 4.3717 2.8975 0.9794 44 1 3.8418 0.1540 -0.1558 45 1 3.8925 1.7330 -0.9896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601423051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:47 Heat of formation + Delta-G solvation = -123.250935 kcal Electronic energy + Delta-G solvation = -30179.426642 eV Core-core repulsion = 26287.632414 eV Total energy + Delta-G solvation = -3891.794227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83680 -39.58283 -38.12716 -36.72621 -36.63672 -35.98442 -35.20835 -32.43192 -31.76387 -29.88942 -29.78584 -27.68743 -27.15501 -25.08087 -23.66319 -22.90576 -21.69656 -20.65650 -20.15342 -19.57554 -18.87143 -18.11819 -17.77210 -17.16640 -16.89321 -16.57998 -16.26610 -16.02869 -15.72381 -15.47454 -15.17661 -15.06322 -14.76729 -14.68385 -14.12626 -14.03512 -13.79844 -13.56960 -13.33365 -13.07709 -13.02350 -12.92326 -12.78845 -12.67713 -12.49251 -12.45458 -12.33124 -12.04314 -11.99471 -11.86114 -11.78621 -11.41764 -11.30644 -11.20595 -11.05085 -10.47055 -10.20490 -9.91511 -9.41990 -8.95378 -6.63441 -0.22707 0.34841 0.78626 1.26423 1.33307 1.42721 2.11279 2.28715 2.47568 2.83619 2.89712 3.29265 3.56226 3.58493 3.69626 3.89606 4.22539 4.24092 4.34069 4.35720 4.37899 4.51148 4.53479 4.56350 4.62094 4.69247 4.78273 4.79371 4.83073 4.88110 4.93887 4.97238 5.03141 5.07909 5.13129 5.18300 5.24540 5.35676 5.39487 5.45438 5.56279 5.76254 5.86167 6.10855 6.19399 6.33823 6.36551 6.57904 6.73140 8.07682 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.006920 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.209012 B = 4045.041753 C = 5039.181646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.376 6.376 3 C 0.101 3.899 4 C 0.109 3.891 5 N -1.102 6.102 6 S 2.719 3.281 7 O -1.001 7.001 8 O -1.007 7.007 9 C -0.776 4.776 10 C -0.010 4.010 11 C -0.236 4.236 12 C -0.055 4.055 13 C -0.220 4.220 14 C 0.149 3.851 15 C -0.513 4.513 16 H 0.097 0.903 17 C 0.086 3.914 18 N -0.802 5.802 19 Si 0.883 3.117 20 H -0.227 1.227 21 H -0.230 1.230 22 H -0.267 1.267 23 C -0.155 4.155 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.119 4.119 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.420 0.580 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.298 0.702 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -2.669 5.665 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.295 6.295 3 C 0.060 3.940 4 C -0.017 4.017 5 N -0.862 5.862 6 S 2.815 3.185 7 O -0.991 6.991 8 O -0.997 6.997 9 C -0.870 4.870 10 C -0.029 4.029 11 C -0.256 4.256 12 C -0.074 4.074 13 C -0.239 4.239 14 C 0.145 3.855 15 C -0.540 4.540 16 H 0.114 0.886 17 C -0.136 4.136 18 N -0.424 5.424 19 Si 0.702 3.298 20 H -0.151 1.151 21 H -0.153 1.153 22 H -0.192 1.192 23 C -0.193 4.193 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.157 4.157 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.256 0.744 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.769 -3.270 5.414 10.812 hybrid contribution 0.050 1.194 0.213 1.214 sum 8.819 -2.076 5.627 10.665 Atomic orbital electron populations 1.22910 0.81277 1.03499 1.00202 1.87881 1.19804 1.26991 1.94864 1.22607 0.95089 0.83147 0.93173 1.22374 1.00617 0.96227 0.82498 1.55076 1.52449 1.57182 1.21518 1.00374 0.72805 0.73799 0.71524 1.93460 1.33305 1.87411 1.84923 1.93433 1.77278 1.72498 1.56539 1.30304 1.21593 1.22021 1.13073 1.20738 0.91551 0.97531 0.93127 1.21047 1.08500 0.92311 1.03751 1.21334 0.93135 0.99746 0.93144 1.21501 1.06256 0.95463 1.00727 1.17259 0.86621 0.91346 0.90297 1.19960 1.17994 1.21591 0.94479 0.88558 1.26470 0.99862 0.91776 0.95447 1.69792 1.32533 1.31084 1.09026 0.86675 0.81503 0.80249 0.81356 1.15073 1.15286 1.19202 1.23015 1.00355 1.00320 0.95638 1.22453 0.92828 1.02546 0.97215 1.22400 0.98621 1.00866 0.94035 1.22275 0.90438 1.03161 0.99822 0.87605 0.93314 0.95318 0.90903 0.90865 0.74391 0.85355 0.84394 0.84573 0.87760 0.89080 0.92042 0.90667 0.90137 0.90378 0.88859 0.91899 0.89044 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.10 113.37 1.15 1.69 16 2 O -0.38 -11.98 10.23 -148.98 -1.52 -13.50 16 3 C 0.10 3.18 0.73 -10.07 -0.01 3.18 16 4 C 0.11 4.18 2.39 86.38 0.21 4.38 16 5 N -1.10 -41.24 5.60 -187.48 -1.05 -42.29 16 6 S 2.72 119.74 5.44 -56.49 -0.31 119.43 16 7 O -1.00 -50.94 15.06 -128.00 -1.93 -52.87 16 8 O -1.01 -44.97 16.97 -128.00 -2.17 -47.14 16 9 C -0.78 -35.18 5.95 22.73 0.14 -35.05 16 10 C -0.01 -0.40 9.54 22.22 0.21 -0.19 16 11 C -0.24 -8.65 10.05 22.46 0.23 -8.42 16 12 C -0.06 -2.07 10.02 22.22 0.22 -1.85 16 13 C -0.22 -9.60 6.84 22.73 0.16 -9.45 16 14 C 0.15 7.10 4.62 -21.29 -0.10 7.00 16 15 C -0.51 -25.61 5.15 23.46 0.12 -25.49 16 16 H 0.10 5.47 5.35 -2.91 -0.02 5.45 16 17 C 0.09 3.95 4.26 85.26 0.36 4.31 16 18 N -0.80 -37.83 13.93 21.83 0.30 -37.52 16 19 Si 0.88 34.02 23.60 68.60 1.62 35.64 16 20 H -0.23 -7.81 6.37 99.48 0.63 -7.17 16 21 H -0.23 -9.10 5.53 99.48 0.55 -8.55 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 23 C -0.15 -4.59 5.88 31.70 0.19 -4.40 16 24 C -0.11 -2.56 6.91 31.91 0.22 -2.34 16 25 C -0.12 -2.68 6.83 31.67 0.22 -2.47 16 26 C -0.12 -3.11 5.51 31.32 0.17 -2.94 16 27 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.05 1.46 6.29 -2.39 -0.02 1.44 16 29 H 0.03 1.05 6.64 -2.38 -0.02 1.04 16 30 H 0.07 2.91 3.24 -2.38 -0.01 2.90 16 31 H 0.07 3.24 4.38 -2.39 -0.01 3.23 16 32 H 0.42 13.27 7.58 -96.75 -0.73 12.54 16 33 H 0.13 4.76 7.32 -2.92 -0.02 4.74 16 34 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.10 4.44 6.93 -2.91 -0.02 4.42 16 37 H 0.30 12.55 8.30 -92.71 -0.77 11.78 16 38 H 0.06 2.02 6.22 -2.39 -0.01 2.01 16 39 H 0.07 2.18 6.23 -2.39 -0.01 2.17 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 2.14 7.95 -2.39 -0.02 2.12 16 45 H 0.08 2.04 7.01 -2.39 -0.02 2.03 16 Total: -1.00 -61.00 344.89 -1.51 -62.50 By element: Atomic # 1 Polarization: 47.71 SS G_CDS: 0.07 Total: 47.78 kcal Atomic # 6 Polarization: -75.51 SS G_CDS: 3.48 Total: -72.03 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -0.75 Total: -79.81 kcal Atomic # 8 Polarization: -107.89 SS G_CDS: -5.62 Total: -113.51 kcal Atomic # 14 Polarization: 34.02 SS G_CDS: 1.62 Total: 35.64 kcal Atomic # 16 Polarization: 119.74 SS G_CDS: -0.31 Total: 119.43 kcal Total: -61.00 -1.51 -62.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601423051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.747 kcal (2) G-P(sol) polarization free energy of solvation -60.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds