Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99906 * 2 1 4 4 H 1.09006 * 109.46947 * 7.60028 * 3 2 1 5 5 C 1.53004 * 109.47026 * 127.59381 * 3 2 1 6 6 H 1.08997 * 109.47074 * 175.00420 * 5 3 2 7 7 C 1.52999 * 109.46982 * 55.00039 * 5 3 2 8 8 N 1.46501 * 109.47108 * 295.00306 * 5 3 2 9 9 S 1.65603 * 120.00071 * 215.63139 * 8 5 3 10 10 O 1.42096 * 106.40114 * 309.25637 * 9 8 5 11 11 O 1.42095 * 106.40057 * 176.33133 * 9 8 5 12 12 C 1.76201 * 107.21747 * 62.79259 * 9 8 5 13 13 C 1.37636 * 120.13061 * 245.44729 * 12 9 8 14 14 C 1.38608 * 120.25110 * 180.02562 * 13 12 9 15 15 C 1.38653 * 120.50429 * 0.02562 * 14 13 12 16 16 C 1.37601 * 120.24361 * 359.97438 * 15 14 13 17 17 C 1.40699 * 120.12685 * 65.46405 * 12 9 8 18 18 C 1.41395 * 120.24601 * 359.95754 * 17 12 9 19 19 H 1.07996 * 120.00346 * 332.95754 * 18 17 12 20 20 C 1.39946 * 120.00092 * 152.94624 * 18 17 12 21 21 N 1.30825 * 119.99957 * 344.15277 * 20 18 17 22 22 Si 1.86800 * 120.00116 * 164.14392 * 20 18 17 23 23 H 1.48502 * 109.46876 * 90.00293 * 22 20 18 24 24 H 1.48497 * 109.47363 * 210.00469 * 22 20 18 25 25 H 1.48500 * 109.47009 * 330.00675 * 22 20 18 26 26 C 1.52997 * 109.47552 * 247.59398 * 3 2 1 27 27 C 1.53001 * 117.49868 * 132.74605 * 26 3 2 28 28 C 1.53007 * 117.49713 * 64.08883 * 26 3 2 29 29 H 1.08999 * 109.47252 * 302.37805 * 1 2 3 30 30 H 1.09000 * 109.47098 * 62.37742 * 1 2 3 31 31 H 1.09004 * 109.47139 * 182.37287 * 1 2 3 32 32 H 1.09000 * 109.47288 * 60.00150 * 7 5 3 33 33 H 1.09003 * 109.46870 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.47106 * 300.00382 * 7 5 3 35 35 H 0.97000 * 119.99695 * 35.63096 * 8 5 3 36 36 H 1.08001 * 119.87208 * 0.02562 * 13 12 9 37 37 H 1.08002 * 119.74935 * 180.27088 * 14 13 12 38 38 H 1.08000 * 119.88035 * 179.97438 * 15 14 13 39 39 H 1.08005 * 120.12284 * 180.02562 * 16 15 14 40 40 H 0.97006 * 120.00055 * 179.97438 * 21 20 18 41 41 H 1.09001 * 115.55323 * 278.41939 * 26 3 2 42 42 H 1.09002 * 117.49883 * 0.02562 * 27 26 3 43 43 H 1.09004 * 117.49691 * 145.01901 * 27 26 3 44 44 H 1.08997 * 117.49359 * 214.98066 * 28 26 3 45 45 H 1.09003 * 117.49739 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2273 2.0517 0.1359 5 6 3.0216 1.4135 1.1430 6 1 3.5289 2.3767 1.0895 7 6 4.0504 0.2876 1.0216 8 7 2.3229 1.3002 2.4257 9 16 2.8358 2.1839 3.7289 10 8 4.2330 1.9528 3.8455 11 8 1.9144 1.9226 4.7786 12 6 2.6461 3.8855 3.3125 13 6 3.7531 4.6940 3.1888 14 6 3.6067 6.0330 2.8618 15 6 2.3466 6.5737 2.6563 16 6 1.2259 5.7840 2.7747 17 6 1.3624 4.4230 3.1055 18 6 0.2180 3.6019 3.2293 19 1 0.2931 2.5399 3.0480 20 6 -1.0121 4.1653 3.5871 21 7 -1.0558 5.3664 4.1037 22 14 -2.5915 3.2024 3.3267 23 1 -2.8877 2.3999 4.5406 24 1 -3.7098 4.1455 3.0717 25 1 -2.4323 2.2964 2.1609 26 6 2.7199 1.5479 -1.3335 27 6 2.4522 2.8755 -2.0452 28 6 1.8580 1.5774 -2.5974 29 1 -0.3634 0.5503 0.8679 30 1 -0.3633 0.4765 -0.9105 31 1 -0.3634 -1.0268 0.0425 32 1 4.5703 0.3718 0.0673 33 1 4.7712 0.3648 1.8357 34 1 3.5430 -0.6756 1.0751 35 1 1.5597 0.7076 2.5115 36 1 4.7394 4.2836 3.3470 37 1 4.4811 6.6591 2.7625 38 1 2.2442 7.6184 2.4024 39 1 0.2453 6.2071 2.6138 40 1 -1.9085 5.7571 4.3514 41 1 3.7212 1.1251 -1.4169 42 1 1.7707 3.5765 -1.5632 43 1 3.2772 3.3261 -2.5971 44 1 2.2924 1.1743 -3.5122 45 1 0.7854 1.4236 -2.4788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601432491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -83.798561 kcal Electronic energy + Delta-G solvation = -29357.192028 eV Core-core repulsion = 25467.108584 eV Total energy + Delta-G solvation = -3890.083444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.18404 -37.61740 -36.22669 -36.07306 -35.11184 -34.79712 -33.93562 -30.32628 -29.91613 -29.56074 -27.19019 -25.61903 -25.57958 -22.41535 -21.98379 -21.68346 -21.16806 -20.06699 -18.62942 -17.73578 -17.07962 -16.41935 -16.32432 -15.82985 -15.58689 -15.36540 -14.65840 -14.51619 -14.39057 -13.94603 -13.44693 -13.30128 -13.25182 -12.98051 -12.79923 -12.72635 -12.00044 -11.86360 -11.65977 -11.58070 -11.50841 -11.31464 -11.21206 -11.07569 -11.05999 -11.01534 -10.92875 -10.82749 -10.70678 -10.57729 -10.30143 -10.09114 -9.93158 -9.59638 -9.46034 -9.26974 -8.74651 -8.06011 -7.65912 -7.10909 -4.79526 1.55253 2.31772 2.68919 2.90566 2.92342 3.06919 3.56988 3.70490 3.90632 4.11565 4.35019 4.71586 4.78126 4.86938 5.05851 5.15680 5.20222 5.27787 5.40990 5.47525 5.55324 5.57169 5.65936 5.68273 5.81253 5.84440 5.89976 5.93031 6.03477 6.12767 6.18856 6.21575 6.25789 6.38483 6.56044 6.64778 6.74294 6.91415 7.05582 7.27206 7.31710 7.46566 7.55077 7.66001 7.78226 7.85672 8.24547 8.44750 8.61338 9.83213 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008977 B = 0.006204 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.245784 B = 4512.061381 C = 5290.467889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.373 6.373 3 C 0.112 3.888 4 H 0.079 0.921 5 C 0.159 3.841 6 H 0.094 0.906 7 C -0.165 4.165 8 N -1.115 6.115 9 S 2.698 3.302 10 O -0.996 6.996 11 O -0.966 6.966 12 C -0.778 4.778 13 C -0.001 4.001 14 C -0.251 4.251 15 C -0.074 4.074 16 C -0.161 4.161 17 C 0.188 3.812 18 C -0.446 4.446 19 H 0.086 0.914 20 C 0.082 3.918 21 N -0.770 5.770 22 Si 0.910 3.090 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.165 4.165 27 C -0.174 4.174 28 C -0.172 4.172 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.411 0.589 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.288 0.712 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -5.367 -10.739 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.292 6.292 3 C 0.052 3.948 4 H 0.097 0.903 5 C 0.051 3.949 6 H 0.112 0.888 7 C -0.224 4.224 8 N -0.871 5.871 9 S 2.795 3.205 10 O -0.986 6.986 11 O -0.957 6.957 12 C -0.873 4.873 13 C -0.021 4.021 14 C -0.271 4.271 15 C -0.093 4.093 16 C -0.181 4.181 17 C 0.183 3.817 18 C -0.474 4.474 19 H 0.104 0.896 20 C -0.140 4.140 21 N -0.393 5.393 22 Si 0.733 3.267 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.180 1.180 26 C -0.184 4.184 27 C -0.211 4.211 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.244 0.756 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.111 0.889 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.286 -5.632 -9.835 11.406 hybrid contribution -1.493 0.446 -0.443 1.620 sum -0.207 -5.186 -10.278 11.514 Atomic orbital electron populations 1.22905 0.81449 1.02426 1.00320 1.87878 1.19115 1.27367 1.94837 1.21994 0.95316 0.85499 0.91946 0.90312 1.20759 0.91993 0.99815 0.82289 0.88820 1.22232 0.98808 0.99392 1.01947 1.55727 1.45471 1.60257 1.25628 1.01188 0.72477 0.74332 0.72463 1.93448 1.33082 1.86125 1.85947 1.93542 1.64149 1.85478 1.52482 1.29857 1.00079 1.22209 1.35141 1.20264 0.95820 0.93660 0.92388 1.20474 0.96155 0.95441 1.15079 1.20883 0.93386 0.97595 0.97480 1.21434 0.97492 0.94685 1.04460 1.16965 0.89377 0.92345 0.83019 1.19817 0.92709 0.95915 1.38916 0.89579 1.25943 1.01438 0.94897 0.91706 1.69801 1.29034 1.14801 1.25673 0.86258 0.79594 0.80352 0.80509 1.18577 1.19709 1.17997 1.22674 1.00959 1.01897 0.92864 1.23050 1.03668 0.90799 1.03611 1.22832 0.99420 1.01604 0.97099 0.93345 0.94376 0.89938 0.92141 0.91430 0.91529 0.75605 0.87403 0.88757 0.88875 0.86088 0.90066 0.86961 0.88296 0.88549 0.88933 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.71 101.05 1.08 1.39 16 2 O -0.37 -5.11 9.14 -35.23 -0.32 -5.44 16 3 C 0.11 1.57 2.29 -26.73 -0.06 1.51 16 4 H 0.08 1.19 7.41 -51.93 -0.38 0.80 16 5 C 0.16 2.49 2.66 -67.93 -0.18 2.31 16 6 H 0.09 1.51 7.74 -51.93 -0.40 1.11 16 7 C -0.16 -2.35 9.14 37.16 0.34 -2.01 16 8 N -1.12 -19.79 4.60 -4.89 -0.02 -19.82 16 9 S 2.70 59.00 4.87 -107.50 -0.52 58.48 16 10 O -1.00 -22.54 16.34 -57.17 -0.93 -23.48 16 11 O -0.97 -24.18 16.50 -57.17 -0.94 -25.12 16 12 C -0.78 -18.24 5.65 -38.87 -0.22 -18.46 16 13 C 0.00 -0.03 9.53 -39.66 -0.38 -0.41 16 14 C -0.25 -5.37 10.05 -39.29 -0.39 -5.77 16 15 C -0.07 -1.63 10.02 -39.66 -0.40 -2.03 16 16 C -0.16 -3.87 8.67 -38.87 -0.34 -4.20 16 17 C 0.19 4.64 5.55 -106.83 -0.59 4.05 16 18 C -0.45 -10.83 7.67 -37.74 -0.29 -11.12 16 19 H 0.09 1.96 5.77 -52.49 -0.30 1.66 16 20 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 21 N -0.77 -18.56 11.01 55.55 0.61 -17.95 16 22 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 26 C -0.16 -2.00 5.17 -90.62 -0.47 -2.47 16 27 C -0.17 -1.98 10.18 -26.69 -0.27 -2.25 16 28 C -0.17 -1.85 10.22 -26.69 -0.27 -2.12 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.41 7.25 -51.93 -0.38 0.04 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 6.41 -51.93 -0.33 0.39 16 33 H 0.07 1.04 7.71 -51.93 -0.40 0.64 16 34 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 35 H 0.41 6.76 8.42 -34.48 -0.29 6.47 16 36 H 0.11 2.23 7.32 -52.49 -0.38 1.85 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 2.93 6.28 -52.48 -0.33 2.60 16 40 H 0.29 6.23 8.30 -40.82 -0.34 5.90 16 41 H 0.11 1.27 6.40 -51.93 -0.33 0.94 16 42 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.97 7.25 -51.93 -0.38 0.60 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -29.51 376.61 -10.41 -39.92 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -6.39 Total: 15.16 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: -2.53 Total: -39.74 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.59 Total: -37.77 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -2.20 Total: -54.03 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 59.00 SS G_CDS: -0.52 Total: 58.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.51 -10.41 -39.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601432491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.878 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds