Wall clock time and date at job start Sat Apr 11 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47075 * 2 1 4 4 O 1.42898 * 109.46727 * 120.00124 * 2 1 3 5 5 C 1.42906 * 113.99963 * 90.00052 * 4 2 1 6 6 H 1.09000 * 112.85083 * 18.79732 * 5 4 2 7 7 C 1.53777 * 113.61458 * 149.99605 * 5 4 2 8 8 C 1.53780 * 87.08077 * 140.06349 * 7 5 4 9 9 H 1.08998 * 113.61323 * 89.20384 * 8 7 5 10 10 N 1.46504 * 113.61212 * 220.01887 * 8 7 5 11 11 S 1.65602 * 119.99846 * 214.13175 * 10 8 7 12 12 O 1.42105 * 106.40277 * 310.40431 * 11 10 8 13 13 O 1.42099 * 106.40254 * 177.48435 * 11 10 8 14 14 C 1.76201 * 107.21795 * 63.94321 * 11 10 8 15 15 C 1.37639 * 120.12632 * 243.92393 * 14 11 10 16 16 C 1.38611 * 120.24625 * 180.27833 * 15 14 11 17 17 C 1.38659 * 120.50108 * 359.76787 * 16 15 14 18 18 C 1.37594 * 120.25036 * 359.95094 * 17 16 15 19 19 C 1.40692 * 120.12617 * 63.66952 * 14 11 10 20 20 C 1.41391 * 120.24490 * 359.97438 * 19 14 11 21 21 H 1.07999 * 120.00334 * 335.49558 * 20 19 14 22 22 C 1.39952 * 119.99920 * 155.49218 * 20 19 14 23 23 N 1.30825 * 119.99945 * 332.14893 * 22 20 19 24 24 Si 1.86792 * 119.99766 * 152.14587 * 22 20 19 25 25 H 1.48503 * 109.47269 * 180.02562 * 24 22 20 26 26 H 1.48505 * 109.47659 * 300.00091 * 24 22 20 27 27 H 1.48502 * 109.47290 * 60.00564 * 24 22 20 28 28 C 1.53774 * 87.17320 * 334.60738 * 8 7 5 29 29 H 1.09000 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47270 * 300.00287 * 1 2 3 31 31 H 1.08996 * 109.47214 * 59.99796 * 1 2 3 32 32 H 1.09003 * 109.46603 * 239.99874 * 2 1 3 33 33 H 1.09004 * 109.46615 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47268 * 299.99630 * 3 2 1 35 35 H 1.09003 * 109.47508 * 60.00428 * 3 2 1 36 36 H 1.09002 * 113.61417 * 25.51844 * 7 5 4 37 37 H 1.08999 * 113.69537 * 254.62103 * 7 5 4 38 38 H 0.96996 * 120.00116 * 34.13558 * 10 8 7 39 39 H 1.08007 * 119.87865 * 0.02562 * 15 14 11 40 40 H 1.08002 * 119.75006 * 179.74158 * 16 15 14 41 41 H 1.08006 * 119.87272 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.13157 * 180.02562 * 18 17 16 43 43 H 0.96997 * 120.00341 * 356.01891 * 23 22 20 44 44 H 1.09001 * 113.61414 * 139.93723 * 28 8 7 45 45 H 1.09001 * 113.61917 * 270.83816 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.2000 -2.0783 0.9886 6 1 2.2730 -2.3658 -0.0603 7 6 3.3193 -2.6620 1.8667 8 6 2.4069 -3.8810 2.0822 9 1 2.5376 -4.6620 1.3331 10 7 2.4316 -4.3976 3.4529 11 16 2.2761 -6.0231 3.7281 12 8 1.1427 -6.4494 2.9845 13 8 2.3982 -6.2059 5.1320 14 6 3.6738 -6.8114 3.0003 15 6 3.5046 -7.6898 1.9543 16 6 4.6019 -8.3156 1.3836 17 6 5.8809 -8.0617 1.8550 18 6 6.0743 -7.1829 2.8960 19 6 4.9676 -6.5412 3.4827 20 6 5.1540 -5.6361 4.5528 21 1 4.4181 -4.8698 4.7465 22 6 6.2922 -5.7334 5.3613 23 7 6.8839 -6.8891 5.5216 24 14 6.9666 -4.2130 6.2114 25 1 8.1687 -4.5802 7.0023 26 1 7.3364 -3.1986 5.1918 27 1 5.9313 -3.6512 7.1158 28 6 1.2192 -2.9468 1.7973 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.5048 -2.0895 2.7755 37 1 4.2323 -2.8917 1.3174 38 1 2.5390 -3.7874 4.1992 39 1 2.5128 -7.8953 1.5793 40 1 4.4595 -9.0067 0.5659 41 1 6.7287 -8.5553 1.4032 42 1 7.0713 -6.9862 3.2613 43 1 6.5014 -7.6887 5.1275 44 1 0.4385 -3.4056 1.1906 45 1 0.8294 -2.4522 2.6870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436655.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:09 Heat of formation + Delta-G solvation = -100.064984 kcal Electronic energy + Delta-G solvation = -28118.820547 eV Core-core repulsion = 24228.031738 eV Total energy + Delta-G solvation = -3890.788809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.58047 -37.84312 -37.12754 -36.23731 -34.88371 -34.15826 -32.98840 -31.51674 -30.21917 -29.49106 -27.43999 -25.55819 -25.42144 -23.74719 -21.84369 -21.50666 -21.22816 -19.92993 -18.78816 -18.32590 -17.25532 -16.73121 -16.16097 -15.71100 -15.34120 -14.97744 -14.81046 -14.49072 -14.28879 -14.16206 -13.72297 -13.36236 -13.08333 -12.87523 -12.68171 -12.54452 -12.41858 -12.32802 -12.24372 -11.88018 -11.67277 -11.60434 -11.26363 -11.19497 -11.17495 -11.15278 -11.03050 -11.00619 -10.73647 -10.58408 -10.52044 -10.41449 -9.89154 -9.51740 -9.44232 -9.24475 -8.79375 -8.23746 -7.87642 -7.55180 -4.87248 1.48454 2.22463 2.64070 3.04714 3.15594 3.23805 3.53753 3.83009 3.95444 4.28782 4.56168 4.63053 4.70127 4.76083 4.88792 4.92447 5.01021 5.02129 5.13212 5.30389 5.37543 5.48067 5.55105 5.59293 5.63299 5.81455 5.89207 5.90604 5.91878 5.99901 6.02190 6.04022 6.11275 6.16877 6.29026 6.55334 6.66768 6.88108 7.07323 7.26621 7.28390 7.35828 7.45339 7.56789 7.62874 7.77847 7.95263 8.32149 8.53950 9.70556 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011120 B = 0.004017 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.277044 B = 6969.196160 C = 7959.598987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.365 6.365 5 C 0.062 3.938 6 H 0.088 0.912 7 C -0.140 4.140 8 C 0.144 3.856 9 H 0.111 0.889 10 N -1.105 6.105 11 S 2.699 3.301 12 O -0.997 6.997 13 O -0.967 6.967 14 C -0.786 4.786 15 C 0.014 3.986 16 C -0.268 4.268 17 C -0.054 4.054 18 C -0.215 4.215 19 C 0.164 3.836 20 C -0.492 4.492 21 H 0.088 0.912 22 C 0.044 3.956 23 N -0.765 5.765 24 Si 1.062 2.938 25 H -0.270 1.270 26 H -0.269 1.269 27 H -0.268 1.268 28 C -0.167 4.167 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.305 0.695 44 H 0.073 0.927 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 11.977 -8.866 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.021 3.979 3 C -0.208 4.208 4 O -0.284 6.284 5 C 0.004 3.996 6 H 0.106 0.894 7 C -0.179 4.179 8 C 0.035 3.965 9 H 0.129 0.871 10 N -0.859 5.859 11 S 2.797 3.203 12 O -0.988 6.988 13 O -0.958 6.958 14 C -0.881 4.881 15 C -0.006 4.006 16 C -0.289 4.289 17 C -0.073 4.073 18 C -0.235 4.235 19 C 0.159 3.841 20 C -0.518 4.518 21 H 0.106 0.894 22 C -0.182 4.182 23 N -0.385 5.385 24 Si 0.884 3.116 25 H -0.194 1.194 26 H -0.194 1.194 27 H -0.193 1.193 28 C -0.207 4.207 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.739 12.023 -7.369 14.876 hybrid contribution -0.526 -0.671 -1.430 1.664 sum -5.265 11.352 -8.799 15.297 Atomic orbital electron populations 1.22330 0.96129 1.02533 1.02256 1.22157 0.93645 0.93806 0.88319 1.21871 1.01832 0.94760 1.02293 1.87984 1.85635 1.19737 1.35043 1.23651 0.97120 0.80428 0.98446 0.89416 1.23624 0.97463 0.95887 1.00954 1.21691 0.95875 0.95073 0.83876 0.87073 1.55611 1.90905 1.27050 1.12375 1.01128 0.73827 0.71967 0.73421 1.93454 1.49965 1.81139 1.74199 1.93543 1.87622 1.84272 1.30350 1.29750 1.14225 1.23699 1.20389 1.20319 0.97567 0.91405 0.91334 1.20422 0.93059 1.09145 1.06260 1.20815 0.95909 0.95486 0.95085 1.21310 0.98241 1.03590 1.00326 1.16944 0.89306 0.88086 0.89812 1.20924 1.07365 1.13274 1.10272 0.89375 1.27185 0.93039 1.02698 0.95319 1.70467 1.37930 1.00738 1.29392 0.83679 0.77519 0.73349 0.77080 1.19418 1.19432 1.19294 1.24074 0.97911 0.97356 1.01344 0.92249 0.91881 0.92028 0.92277 0.91990 0.91533 0.91865 0.88441 0.90197 0.75365 0.87351 0.88603 0.88686 0.87178 0.88144 0.90813 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.53 37.16 0.35 -1.14 16 2 C 0.08 0.74 3.33 -26.73 -0.09 0.65 16 3 C -0.15 -1.22 9.56 37.15 0.36 -0.86 16 4 O -0.37 -4.44 10.00 -35.23 -0.35 -4.79 16 5 C 0.06 0.73 4.26 -25.83 -0.11 0.62 16 6 H 0.09 0.89 7.45 -51.93 -0.39 0.51 16 7 C -0.14 -1.86 7.70 -25.92 -0.20 -2.06 16 8 C 0.14 2.15 4.34 -67.12 -0.29 1.86 16 9 H 0.11 1.68 8.05 -51.93 -0.42 1.27 16 10 N -1.10 -19.15 4.86 -4.20 -0.02 -19.18 16 11 S 2.70 58.48 4.88 -107.50 -0.53 57.96 16 12 O -1.00 -22.48 16.75 -57.17 -0.96 -23.43 16 13 O -0.97 -24.08 16.61 -57.17 -0.95 -25.03 16 14 C -0.79 -18.35 5.91 -38.87 -0.23 -18.58 16 15 C 0.01 0.30 9.53 -39.66 -0.38 -0.08 16 16 C -0.27 -5.71 10.05 -39.29 -0.39 -6.10 16 17 C -0.05 -1.17 10.02 -39.66 -0.40 -1.57 16 18 C -0.21 -5.12 7.99 -38.87 -0.31 -5.43 16 19 C 0.16 4.03 5.31 -106.83 -0.57 3.47 16 20 C -0.49 -12.05 7.70 -37.74 -0.29 -12.34 16 21 H 0.09 2.03 5.61 -52.49 -0.29 1.74 16 22 C 0.04 1.04 4.88 -17.34 -0.08 0.96 16 23 N -0.76 -19.15 12.36 55.55 0.69 -18.47 16 24 Si 1.06 20.15 30.01 -169.99 -5.10 15.05 16 25 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 26 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 27 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 28 C -0.17 -2.16 7.73 -25.83 -0.20 -2.36 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.51 7.42 -51.93 -0.39 0.12 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.41 6.46 8.66 -34.47 -0.30 6.16 16 39 H 0.11 2.22 7.33 -52.48 -0.38 1.83 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.11 2.64 6.49 -52.49 -0.34 2.30 16 43 H 0.30 7.88 6.74 -40.82 -0.28 7.60 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -30.23 379.97 -10.98 -41.21 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -6.65 Total: 13.91 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: -2.83 Total: -42.96 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.67 Total: -37.64 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.26 Total: -53.25 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.10 Total: 15.05 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.53 Total: 57.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.23 -10.98 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436655.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.852 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds