Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99771 * 2 1 3 5 5 O 1.42892 * 109.47277 * 304.99574 * 4 2 1 6 6 C 1.42898 * 114.00431 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47657 * 180.02562 * 6 5 4 8 8 C 1.52993 * 117.49924 * 243.75243 * 7 6 5 9 9 C 1.52996 * 117.49931 * 175.08954 * 7 6 5 10 10 N 1.46499 * 109.47082 * 119.99545 * 2 1 3 11 11 S 1.65606 * 119.99979 * 263.83536 * 10 2 1 12 12 O 1.42094 * 106.40411 * 311.69206 * 11 10 2 13 13 O 1.42105 * 106.39774 * 178.77003 * 11 10 2 14 14 C 1.76197 * 107.21717 * 65.23249 * 11 10 2 15 15 C 1.37644 * 120.12712 * 244.26184 * 14 11 10 16 16 C 1.38620 * 120.24365 * 180.31890 * 15 14 11 17 17 C 1.38651 * 120.50144 * 359.67495 * 16 15 14 18 18 C 1.37594 * 120.25487 * 359.97438 * 17 16 15 19 19 C 1.40700 * 120.13192 * 63.95592 * 14 11 10 20 20 C 1.41404 * 120.24048 * 359.97438 * 19 14 11 21 21 H 1.08001 * 119.99697 * 335.61749 * 20 19 14 22 22 C 1.39941 * 119.99980 * 155.61287 * 20 19 14 23 23 N 1.30819 * 120.00328 * 331.87638 * 22 20 19 24 24 Si 1.86801 * 120.00041 * 151.86770 * 22 20 19 25 25 H 1.48492 * 109.47459 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.47123 * 300.00751 * 24 22 20 27 27 H 1.48498 * 109.46911 * 60.00110 * 24 22 20 28 28 H 1.08999 * 109.47878 * 300.00340 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47646 * 65.00196 * 4 2 1 32 32 H 1.09003 * 109.47000 * 184.99700 * 4 2 1 33 33 H 1.09000 * 109.47333 * 300.00380 * 6 5 4 34 34 H 1.09004 * 109.47008 * 60.00437 * 6 5 4 35 35 H 1.09005 * 115.54525 * 29.41554 * 7 6 5 36 36 H 1.09008 * 117.50071 * 359.97438 * 8 7 6 37 37 H 1.09003 * 117.50156 * 145.02279 * 8 7 6 38 38 H 1.09010 * 117.49563 * 214.98274 * 9 7 6 39 39 H 1.08994 * 117.50064 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00107 * 83.83612 * 10 2 1 41 41 H 1.07994 * 119.87839 * 0.02562 * 15 14 11 42 42 H 1.08000 * 119.74548 * 179.69134 * 16 15 14 43 43 H 1.08009 * 119.87165 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.13215 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99950 * 355.66508 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3093 6 6 1.8836 -2.7926 -2.4451 7 6 1.2154 -4.1684 -2.4068 8 6 2.1237 -5.3912 -2.2638 9 6 1.4408 -5.0968 -3.6018 10 7 2.0183 -0.6905 1.1962 11 16 2.4395 0.1798 2.5407 12 8 3.2798 1.2332 2.0899 13 8 2.8385 -0.7668 3.5226 14 6 0.9718 0.9405 3.1505 15 6 0.8568 2.3121 3.1588 16 6 -0.2942 2.9133 3.6441 17 6 -1.3439 2.1424 4.1198 18 6 -1.2537 0.7694 4.1144 19 6 -0.0897 0.1481 3.6248 20 6 0.0144 -1.2620 3.6147 21 1 0.6826 -1.7491 2.9199 22 6 -0.7483 -2.0264 4.5048 23 7 -1.1106 -1.5218 5.6561 24 14 -1.2494 -3.7672 4.0490 25 1 -2.0470 -4.3581 5.1534 26 1 -2.0665 -3.7386 2.8092 27 1 -0.0335 -4.5887 3.8215 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.7517 -0.1585 -2.1369 32 1 3.1263 -0.7994 -1.2055 33 1 1.5916 -2.2726 -3.3575 34 1 2.9667 -2.9138 -2.4267 35 1 0.2418 -4.2047 -1.9178 36 1 3.1975 -5.2156 -2.1975 37 1 1.7476 -6.2323 -1.6813 38 1 0.6156 -5.7442 -3.8989 39 1 2.0648 -4.7274 -4.4155 40 1 2.0949 -1.6575 1.2008 41 1 1.6680 2.9222 2.7903 42 1 -0.3738 3.9903 3.6515 43 1 -2.2361 2.6215 4.4952 44 1 -2.0728 0.1709 4.4849 45 1 -0.7984 -0.6420 5.9198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601455642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -93.549466 kcal Electronic energy + Delta-G solvation = -28385.127751 eV Core-core repulsion = 24494.621476 eV Total energy + Delta-G solvation = -3890.506275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.70700 -37.81703 -37.11682 -36.24675 -35.06294 -34.85594 -34.09253 -30.19641 -29.82129 -29.40188 -27.49277 -25.69623 -25.35246 -22.58503 -21.77832 -21.28283 -21.05035 -20.65852 -18.79184 -18.29610 -17.14730 -16.61302 -16.33196 -15.99434 -15.78483 -15.02610 -14.84686 -14.54622 -14.36100 -14.13968 -13.68120 -13.44307 -13.26467 -13.20221 -12.67926 -12.42931 -12.35996 -12.09238 -11.75699 -11.63411 -11.48924 -11.27596 -11.22263 -11.14461 -11.11179 -11.03224 -10.88864 -10.71020 -10.54628 -10.48390 -10.40947 -10.34643 -9.84606 -9.53067 -9.50842 -9.20178 -8.78711 -8.17286 -7.82469 -7.50673 -4.81468 1.53473 2.27397 2.68681 3.08113 3.19640 3.27893 3.37613 3.73816 3.86895 3.93105 4.32872 4.61625 4.69708 4.72876 4.84827 5.01993 5.10622 5.15596 5.24026 5.29180 5.39529 5.42996 5.48766 5.56047 5.63185 5.69315 5.80625 5.89511 5.91830 5.97372 6.05167 6.08605 6.32642 6.33719 6.54133 6.68685 6.86077 6.93175 7.12853 7.21310 7.31629 7.41505 7.52004 7.65994 7.70014 7.83037 8.00603 8.37533 8.58927 9.74768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.004711 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.386614 B = 5941.971641 C = 7425.179821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.160 3.840 3 H 0.097 0.903 4 C 0.060 3.940 5 O -0.374 6.374 6 C 0.093 3.907 7 C -0.151 4.151 8 C -0.177 4.177 9 C -0.176 4.176 10 N -1.112 6.112 11 S 2.700 3.300 12 O -1.001 7.001 13 O -0.968 6.968 14 C -0.783 4.783 15 C 0.015 3.985 16 C -0.269 4.269 17 C -0.054 4.054 18 C -0.215 4.215 19 C 0.166 3.834 20 C -0.489 4.489 21 H 0.089 0.911 22 C 0.045 3.955 23 N -0.765 5.765 24 Si 1.061 2.939 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.268 1.268 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.416 0.584 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -3.851 -14.640 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 H 0.115 0.885 4 C -0.019 4.019 5 O -0.293 6.293 6 C 0.016 3.984 7 C -0.169 4.169 8 C -0.214 4.214 9 C -0.214 4.214 10 N -0.869 5.869 11 S 2.797 3.203 12 O -0.992 6.992 13 O -0.958 6.958 14 C -0.878 4.878 15 C -0.005 4.005 16 C -0.290 4.290 17 C -0.073 4.073 18 C -0.235 4.235 19 C 0.160 3.840 20 C -0.515 4.515 21 H 0.107 0.893 22 C -0.182 4.182 23 N -0.386 5.386 24 Si 0.883 3.117 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.193 1.193 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.607 -4.961 -13.580 14.547 hybrid contribution 0.202 1.373 -0.649 1.532 sum 1.810 -3.587 -14.229 14.785 Atomic orbital electron populations 1.22231 0.94492 1.03657 1.02279 1.20685 0.95276 0.95334 0.83455 0.88485 1.22808 0.97344 0.83934 0.97780 1.87928 1.70095 1.26339 1.44941 1.21963 0.97214 0.90379 0.88825 1.22154 1.01574 0.90234 1.02980 1.23077 0.98775 0.99727 0.99824 1.22966 1.03569 1.02966 0.91852 1.55656 1.83781 1.19446 1.28045 1.01058 0.74300 0.72752 0.72173 1.93438 1.66029 1.57617 1.82104 1.93542 1.82417 1.62127 1.57717 1.29722 1.20978 1.02926 1.34179 1.20295 0.95699 0.92633 0.91866 1.20401 0.96895 0.97521 1.14158 1.20796 0.96626 0.94199 0.95684 1.21299 0.98707 0.93928 1.09556 1.16906 0.88719 0.92003 0.86327 1.20934 1.21359 0.91514 1.17730 0.89270 1.27152 0.91841 1.07085 0.92077 1.70465 1.31768 1.19376 1.16978 0.83701 0.78098 0.72625 0.77326 1.19543 1.19417 1.19297 0.90882 0.92781 0.91002 0.92410 0.92703 0.93160 0.93402 0.86637 0.88724 0.88542 0.88525 0.88873 0.75018 0.87464 0.88706 0.88804 0.87261 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.32 37.15 0.35 -2.30 16 2 C 0.16 2.46 3.32 -67.94 -0.23 2.23 16 3 H 0.10 1.45 7.49 -51.93 -0.39 1.07 16 4 C 0.06 0.74 5.74 37.16 0.21 0.96 16 5 O -0.37 -4.96 9.17 -35.23 -0.32 -5.28 16 6 C 0.09 0.97 6.22 37.16 0.23 1.21 16 7 C -0.15 -1.53 6.05 -90.62 -0.55 -2.08 16 8 C -0.18 -1.61 10.18 -26.70 -0.27 -1.88 16 9 C -0.18 -1.41 10.25 -26.69 -0.27 -1.69 16 10 N -1.11 -19.95 4.57 -4.90 -0.02 -19.97 16 11 S 2.70 59.22 4.92 -107.50 -0.53 58.69 16 12 O -1.00 -22.63 16.30 -57.17 -0.93 -23.56 16 13 O -0.97 -24.39 16.58 -57.17 -0.95 -25.34 16 14 C -0.78 -18.32 4.98 -38.87 -0.19 -18.52 16 15 C 0.01 0.33 9.54 -39.66 -0.38 -0.05 16 16 C -0.27 -5.77 10.05 -39.29 -0.39 -6.16 16 17 C -0.05 -1.18 10.02 -39.66 -0.40 -1.58 16 18 C -0.22 -5.15 8.00 -38.88 -0.31 -5.46 16 19 C 0.17 4.09 4.90 -106.82 -0.52 3.56 16 20 C -0.49 -12.11 7.70 -37.74 -0.29 -12.40 16 21 H 0.09 2.12 5.60 -52.49 -0.29 1.82 16 22 C 0.04 1.08 4.88 -17.35 -0.08 0.99 16 23 N -0.77 -19.33 12.35 55.55 0.69 -18.64 16 24 Si 1.06 20.67 30.01 -169.99 -5.10 15.57 16 25 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 26 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 27 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 28 H 0.07 1.34 6.72 -51.93 -0.35 1.00 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.18 7.56 -51.93 -0.39 0.79 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 35 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 0.82 8.03 -51.92 -0.42 0.40 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.42 7.10 8.28 -34.48 -0.29 6.81 16 41 H 0.11 2.21 7.33 -52.49 -0.38 1.83 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 44 H 0.11 2.65 6.50 -52.49 -0.34 2.30 16 45 H 0.30 7.93 6.78 -40.82 -0.28 7.65 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -29.95 379.80 -11.11 -41.06 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -6.56 Total: 14.92 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: -3.10 Total: -43.17 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.66 Total: -38.62 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -2.20 Total: -54.18 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.10 Total: 15.57 kcal Atomic # 16 Polarization: 59.22 SS G_CDS: -0.53 Total: 58.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.95 -11.11 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601455642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.487 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds