Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46883 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99771 * 2 1 3 5 5 O 1.42892 * 109.47277 * 304.99574 * 4 2 1 6 6 C 1.42898 * 114.00431 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47657 * 180.02562 * 6 5 4 8 8 C 1.52993 * 117.49924 * 243.75243 * 7 6 5 9 9 C 1.52996 * 117.49931 * 175.08954 * 7 6 5 10 10 N 1.46499 * 109.47082 * 119.99545 * 2 1 3 11 11 S 1.65606 * 119.99979 * 263.83536 * 10 2 1 12 12 O 1.42094 * 106.40411 * 311.69206 * 11 10 2 13 13 O 1.42105 * 106.39774 * 178.77003 * 11 10 2 14 14 C 1.76197 * 107.21717 * 65.23249 * 11 10 2 15 15 C 1.37644 * 120.12712 * 244.26184 * 14 11 10 16 16 C 1.38620 * 120.24365 * 180.31890 * 15 14 11 17 17 C 1.38651 * 120.50144 * 359.67495 * 16 15 14 18 18 C 1.37594 * 120.25487 * 359.97438 * 17 16 15 19 19 C 1.40700 * 120.13192 * 63.95592 * 14 11 10 20 20 C 1.41404 * 120.24048 * 359.97438 * 19 14 11 21 21 H 1.08001 * 119.99697 * 335.61749 * 20 19 14 22 22 C 1.39941 * 119.99980 * 155.61287 * 20 19 14 23 23 N 1.30819 * 120.00328 * 331.87638 * 22 20 19 24 24 Si 1.86801 * 120.00041 * 151.86770 * 22 20 19 25 25 H 1.48492 * 109.47459 * 180.02562 * 24 22 20 26 26 H 1.48506 * 109.47123 * 300.00751 * 24 22 20 27 27 H 1.48498 * 109.46911 * 60.00110 * 24 22 20 28 28 H 1.08999 * 109.47878 * 300.00340 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00468 * 1 2 3 30 30 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47646 * 65.00196 * 4 2 1 32 32 H 1.09003 * 109.47000 * 184.99700 * 4 2 1 33 33 H 1.09000 * 109.47333 * 300.00380 * 6 5 4 34 34 H 1.09004 * 109.47008 * 60.00437 * 6 5 4 35 35 H 1.09005 * 115.54525 * 29.41554 * 7 6 5 36 36 H 1.09008 * 117.50071 * 359.97438 * 8 7 6 37 37 H 1.09003 * 117.50156 * 145.02279 * 8 7 6 38 38 H 1.09010 * 117.49563 * 214.98274 * 9 7 6 39 39 H 1.08994 * 117.50064 * 359.97438 * 9 7 6 40 40 H 0.97001 * 120.00107 * 83.83612 * 10 2 1 41 41 H 1.07994 * 119.87839 * 0.02562 * 15 14 11 42 42 H 1.08000 * 119.74548 * 179.69134 * 16 15 14 43 43 H 1.08009 * 119.87165 * 180.02562 * 17 16 15 44 44 H 1.08000 * 120.13215 * 180.02562 * 18 17 16 45 45 H 0.97001 * 119.99950 * 355.66508 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3093 6 6 1.8836 -2.7926 -2.4451 7 6 1.2154 -4.1684 -2.4068 8 6 2.1237 -5.3912 -2.2638 9 6 1.4408 -5.0968 -3.6018 10 7 2.0183 -0.6905 1.1962 11 16 2.4395 0.1798 2.5407 12 8 3.2798 1.2332 2.0899 13 8 2.8385 -0.7668 3.5226 14 6 0.9718 0.9405 3.1505 15 6 0.8568 2.3121 3.1588 16 6 -0.2942 2.9133 3.6441 17 6 -1.3439 2.1424 4.1198 18 6 -1.2537 0.7694 4.1144 19 6 -0.0897 0.1481 3.6248 20 6 0.0144 -1.2620 3.6147 21 1 0.6826 -1.7491 2.9199 22 6 -0.7483 -2.0264 4.5048 23 7 -1.1106 -1.5218 5.6561 24 14 -1.2494 -3.7672 4.0490 25 1 -2.0470 -4.3581 5.1534 26 1 -2.0665 -3.7386 2.8092 27 1 -0.0335 -4.5887 3.8215 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.7517 -0.1585 -2.1369 32 1 3.1263 -0.7994 -1.2055 33 1 1.5916 -2.2726 -3.3575 34 1 2.9667 -2.9138 -2.4267 35 1 0.2418 -4.2047 -1.9178 36 1 3.1975 -5.2156 -2.1975 37 1 1.7476 -6.2323 -1.6813 38 1 0.6156 -5.7442 -3.8989 39 1 2.0648 -4.7274 -4.4155 40 1 2.0949 -1.6575 1.2008 41 1 1.6680 2.9222 2.7903 42 1 -0.3738 3.9903 3.6515 43 1 -2.2361 2.6215 4.4952 44 1 -2.0728 0.1709 4.4849 45 1 -0.7984 -0.6420 5.9198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601455642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -111.886871 kcal Electronic energy + Delta-G solvation = -28385.922920 eV Core-core repulsion = 24494.621476 eV Total energy + Delta-G solvation = -3891.301445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.68632 -39.53919 -38.17856 -37.89389 -36.71602 -36.24436 -35.87661 -31.98543 -31.33133 -31.01634 -28.41228 -27.17650 -26.68709 -23.54973 -23.22947 -23.00918 -22.25278 -21.51494 -20.44713 -20.07430 -18.65119 -17.96922 -17.69851 -17.27829 -16.78718 -16.63880 -16.38878 -15.79480 -15.63634 -15.42877 -15.33510 -15.04381 -14.45161 -14.43393 -14.30648 -14.04116 -13.58520 -13.49441 -13.24343 -13.05171 -12.98492 -12.88051 -12.79093 -12.71653 -12.45229 -12.35610 -12.23158 -12.00717 -11.91814 -11.84299 -11.61119 -11.28336 -11.24147 -11.10396 -10.96418 -10.36758 -10.29860 -9.95602 -9.64490 -9.37278 -6.68453 -0.18986 0.46683 0.90194 1.47696 1.61844 1.76099 2.25789 2.27967 2.54588 2.60285 2.95715 3.00872 3.35195 3.75098 3.84532 3.94775 4.00525 4.11948 4.17793 4.25137 4.35329 4.39446 4.41012 4.45573 4.53778 4.65655 4.67393 4.71865 4.79620 4.81446 4.86216 5.03401 5.04153 5.11798 5.25455 5.27275 5.29486 5.31029 5.51723 5.56414 5.63238 5.67788 5.87583 5.99984 6.18104 6.23056 6.35138 6.55893 6.77264 7.85056 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.004711 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.386614 B = 5941.971641 C = 7425.179821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.102 0.898 4 C 0.064 3.936 5 O -0.397 6.397 6 C 0.091 3.909 7 C -0.171 4.171 8 C -0.185 4.185 9 C -0.157 4.157 10 N -1.102 6.102 11 S 2.717 3.283 12 O -1.008 7.008 13 O -1.006 7.006 14 C -0.794 4.794 15 C 0.002 3.998 16 C -0.265 4.265 17 C -0.052 4.052 18 C -0.240 4.240 19 C 0.152 3.848 20 C -0.519 4.519 21 H 0.091 0.909 22 C 0.011 3.989 23 N -0.788 5.788 24 Si 1.101 2.899 25 H -0.267 1.267 26 H -0.253 1.253 27 H -0.258 1.258 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.420 0.580 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -3.556 -17.025 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.120 0.880 4 C -0.014 4.014 5 O -0.317 6.317 6 C 0.015 3.985 7 C -0.190 4.190 8 C -0.222 4.222 9 C -0.194 4.194 10 N -0.862 5.862 11 S 2.813 3.187 12 O -0.998 6.998 13 O -0.996 6.996 14 C -0.888 4.888 15 C -0.018 4.018 16 C -0.285 4.285 17 C -0.071 4.071 18 C -0.260 4.260 19 C 0.147 3.853 20 C -0.545 4.545 21 H 0.108 0.892 22 C -0.209 4.209 23 N -0.409 5.409 24 Si 0.917 3.083 25 H -0.192 1.192 26 H -0.177 1.177 27 H -0.183 1.183 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.255 0.745 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.116 0.884 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.690 -4.643 -15.968 16.715 hybrid contribution 0.206 1.434 0.012 1.449 sum 1.896 -3.209 -15.955 16.385 Atomic orbital electron populations 1.22146 0.94874 1.02877 1.02088 1.20982 0.94997 0.95942 0.83607 0.87970 1.22774 0.97648 0.83991 0.97023 1.87900 1.70566 1.26785 1.46441 1.22111 0.97689 0.90251 0.88498 1.22161 1.01143 0.90724 1.04933 1.23151 0.98895 0.99203 1.00913 1.23052 1.03457 1.01499 0.91422 1.55334 1.83662 1.19493 1.27711 1.00396 0.73755 0.72281 0.72228 1.93418 1.66166 1.58019 1.82229 1.93486 1.83082 1.63122 1.59918 1.29990 1.20998 1.03733 1.34096 1.20623 0.96738 0.92428 0.92007 1.20826 0.96055 0.99268 1.12306 1.21157 0.97887 0.93479 0.94549 1.21346 0.98541 0.95040 1.11023 1.17144 0.89277 0.92433 0.86441 1.21097 1.22745 0.92010 1.18696 0.89152 1.28407 0.91126 1.09995 0.91386 1.70571 1.33458 1.18871 1.17962 0.83243 0.78468 0.68833 0.77775 1.19170 1.17674 1.18260 0.93937 0.89984 0.92057 0.89374 0.91885 0.91549 0.92635 0.88286 0.88350 0.88682 0.87670 0.87412 0.74470 0.85838 0.85382 0.85867 0.88409 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 9.32 71.98 0.67 -4.26 16 2 C 0.15 4.43 3.32 44.99 0.15 4.58 16 3 H 0.10 2.89 7.49 -2.39 -0.02 2.87 16 4 C 0.06 1.43 5.74 71.98 0.41 1.84 16 5 O -0.40 -9.87 9.17 -148.98 -1.37 -11.23 16 6 C 0.09 1.71 6.22 71.98 0.45 2.16 16 7 C -0.17 -3.25 6.05 -10.80 -0.07 -3.31 16 8 C -0.18 -3.10 10.18 30.62 0.31 -2.79 16 9 C -0.16 -2.17 10.25 30.62 0.31 -1.86 16 10 N -1.10 -39.21 4.57 -169.40 -0.77 -39.98 16 11 S 2.72 119.65 4.92 -56.49 -0.28 119.37 16 12 O -1.01 -44.83 16.30 -128.00 -2.09 -46.92 16 13 O -1.01 -51.80 16.58 -128.00 -2.12 -53.93 16 14 C -0.79 -37.37 4.98 22.73 0.11 -37.26 16 15 C 0.00 0.08 9.54 22.22 0.21 0.29 16 16 C -0.26 -10.80 10.05 22.46 0.23 -10.58 16 17 C -0.05 -2.22 10.02 22.22 0.22 -2.00 16 18 C -0.24 -11.67 8.00 22.73 0.18 -11.49 16 19 C 0.15 7.66 4.90 -21.29 -0.10 7.55 16 20 C -0.52 -26.43 7.70 23.46 0.18 -26.25 16 21 H 0.09 4.42 5.60 -2.91 -0.02 4.40 16 22 C 0.01 0.56 4.88 85.26 0.42 0.98 16 23 N -0.79 -41.18 12.35 21.82 0.27 -40.91 16 24 Si 1.10 42.02 30.01 68.60 2.06 44.08 16 25 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 26 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 27 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 28 H 0.04 1.55 6.72 -2.39 -0.02 1.54 16 29 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.99 7.56 -2.39 -0.02 1.97 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 0.95 7.88 -2.38 -0.02 0.93 16 35 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.10 1.55 8.03 -2.38 -0.02 1.53 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.42 14.36 8.28 -96.74 -0.80 13.56 16 41 H 0.12 4.89 7.33 -2.91 -0.02 4.87 16 42 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.10 4.91 6.50 -2.91 -0.02 4.89 16 45 H 0.29 15.74 6.78 -92.71 -0.63 15.11 16 Total: -1.00 -65.43 379.80 -0.27 -65.69 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: 0.34 Total: 46.21 kcal Atomic # 6 Polarization: -86.08 SS G_CDS: 3.69 Total: -82.39 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -0.50 Total: -80.89 kcal Atomic # 8 Polarization: -106.50 SS G_CDS: -5.58 Total: -112.08 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.06 Total: 44.08 kcal Atomic # 16 Polarization: 119.65 SS G_CDS: -0.28 Total: 119.37 kcal Total: -65.43 -0.27 -65.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601455642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.193 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds