Wall clock time and date at job start Sat Apr 11 2020 05:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00513 * 2 1 4 4 C 1.52993 * 109.47056 * 186.64322 * 3 2 1 5 5 N 1.46503 * 110.43669 * 293.05367 * 4 3 2 6 6 S 1.65598 * 119.99909 * 56.71097 * 5 4 3 7 7 O 1.42097 * 106.40225 * 27.74426 * 6 5 4 8 8 O 1.42100 * 106.39939 * 160.66565 * 6 5 4 9 9 C 1.76202 * 107.21645 * 274.20165 * 6 5 4 10 10 C 1.37638 * 120.12232 * 119.73297 * 9 6 5 11 11 C 1.38618 * 120.24520 * 179.72131 * 10 9 6 12 12 C 1.38655 * 120.50165 * 0.55689 * 11 10 9 13 13 C 1.37599 * 120.24617 * 359.72147 * 12 11 10 14 14 C 1.40694 * 120.13095 * 300.00514 * 9 6 5 15 15 C 1.41396 * 120.24380 * 359.97438 * 14 9 6 16 16 H 1.08006 * 119.99547 * 324.25741 * 15 14 9 17 17 C 1.39942 * 120.00481 * 144.26984 * 15 14 9 18 18 N 1.30816 * 120.00119 * 169.32413 * 17 15 14 19 19 Si 1.86807 * 119.99583 * 349.31863 * 17 15 14 20 20 H 1.48504 * 109.46996 * 87.13621 * 19 17 15 21 21 H 1.48502 * 109.47067 * 207.13510 * 19 17 15 22 22 H 1.48499 * 109.47157 * 327.13401 * 19 17 15 23 23 C 1.54893 * 110.48971 * 55.59544 * 4 3 2 24 24 C 1.55234 * 102.58934 * 156.67438 * 23 4 3 25 25 C 1.54259 * 104.23300 * 322.08231 * 24 23 4 26 26 C 1.53878 * 106.60111 * 23.61066 * 25 24 23 27 27 H 1.09012 * 109.46770 * 304.08180 * 1 2 3 28 28 H 1.09001 * 109.47223 * 64.07671 * 1 2 3 29 29 H 1.08991 * 109.47707 * 184.08437 * 1 2 3 30 30 H 1.09000 * 109.47202 * 66.63968 * 3 2 1 31 31 H 1.09003 * 109.46555 * 306.64469 * 3 2 1 32 32 H 0.96998 * 119.99384 * 236.71325 * 5 4 3 33 33 H 1.08001 * 119.87681 * 359.97127 * 10 9 6 34 34 H 1.08006 * 119.74784 * 180.25259 * 11 10 9 35 35 H 1.07997 * 119.87658 * 179.74370 * 12 11 10 36 36 H 1.08003 * 120.12664 * 179.97438 * 13 12 11 37 37 H 0.97010 * 120.00164 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.75158 * 275.07010 * 23 4 3 39 39 H 1.08997 * 110.75409 * 38.43557 * 23 4 3 40 40 H 1.09004 * 110.46403 * 203.39467 * 24 23 4 41 41 H 1.08999 * 110.46719 * 80.77536 * 24 23 4 42 42 H 1.08996 * 110.03674 * 264.32947 * 25 24 23 43 43 H 1.09006 * 110.03312 * 142.89690 * 25 24 23 44 44 H 1.08990 * 110.03565 * 240.71854 * 26 25 24 45 45 H 1.09007 * 110.03184 * 119.27946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5266 1.1884 -0.1669 5 7 4.1235 0.5544 1.0113 6 16 3.6088 -0.9431 1.4958 7 8 3.1400 -1.6035 0.3282 8 8 4.6330 -1.4695 2.3283 9 6 2.2024 -0.7019 2.5296 10 6 0.9874 -1.2468 2.1811 11 6 -0.1193 -1.0634 2.9954 12 6 -0.0193 -0.3212 4.1623 13 6 1.1840 0.2375 4.5273 14 6 2.3157 0.0531 3.7113 15 6 3.5575 0.6220 4.0767 16 1 4.4757 0.0922 3.8701 17 6 3.5968 1.8712 4.7063 18 7 4.7142 2.3044 5.2308 19 14 2.0537 2.9200 4.7975 20 1 1.2717 2.5463 6.0034 21 1 2.4335 4.3534 4.8785 22 1 1.2292 2.6943 3.5832 23 6 3.8710 0.3867 -1.4467 24 6 5.3069 0.8760 -1.7763 25 6 5.2840 2.3792 -1.4308 26 6 4.1521 2.5780 -0.4075 27 1 -0.3633 0.5760 0.8513 28 1 -0.3634 0.4493 -0.9243 29 1 -0.3634 -1.0249 0.0732 30 1 1.7859 1.8031 0.9434 31 1 1.5978 1.8868 -0.8246 32 1 4.8202 1.0119 1.5075 33 1 0.8969 -1.8226 1.2719 34 1 -1.0679 -1.4980 2.7163 35 1 -0.8890 -0.1813 4.7871 36 1 1.2596 0.8157 5.4364 37 1 4.7415 3.1705 5.6669 38 1 3.8617 -0.6845 -1.2456 39 1 3.1830 0.6351 -2.2548 40 1 5.5254 0.7310 -2.8343 41 1 6.0384 0.3538 -1.1596 42 1 5.0837 2.9655 -2.3275 43 1 6.2379 2.6767 -0.9950 44 1 3.4026 3.2605 -0.8077 45 1 4.5567 2.9718 0.5250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601462344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:20 Heat of formation + Delta-G solvation = -97.661578 kcal Electronic energy + Delta-G solvation = -30702.559502 eV Core-core repulsion = 26811.874912 eV Total energy + Delta-G solvation = -3890.684590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.16556 -37.91999 -36.70277 -35.93777 -34.69501 -33.80241 -32.67013 -30.67590 -30.05741 -28.95210 -28.47815 -26.20223 -25.26713 -23.87804 -21.93478 -21.10535 -20.47393 -19.73155 -18.25014 -17.72327 -16.78380 -16.55004 -16.21559 -15.60547 -15.30265 -15.07376 -14.97030 -14.71499 -14.32401 -14.10431 -13.54557 -13.49313 -13.12430 -12.95624 -12.80928 -12.21385 -12.10666 -11.91943 -11.80851 -11.33961 -11.22190 -11.16400 -11.10607 -11.06161 -10.93923 -10.87399 -10.74923 -10.67534 -10.55037 -10.28799 -10.21104 -10.04184 -9.95464 -9.45548 -9.25209 -9.17212 -8.68418 -8.10540 -7.70944 -7.10976 -4.82922 1.70941 2.17726 2.56403 2.95477 3.02692 3.11932 3.78426 3.99268 4.06953 4.31791 4.73825 4.81414 4.93827 5.01288 5.17781 5.39249 5.47171 5.61119 5.64077 5.68114 5.72162 5.77213 5.81838 5.85869 5.91256 5.93975 6.01584 6.05912 6.08374 6.15449 6.21049 6.25683 6.29664 6.52626 6.54250 6.68006 6.75787 6.88517 7.03648 7.13365 7.34143 7.46822 7.56549 7.60941 7.85426 7.89235 8.21795 8.36693 8.59089 9.88608 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.007277 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.674632 B = 3846.788913 C = 4667.608526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.038 3.962 4 C 0.194 3.806 5 N -1.098 6.098 6 S 2.715 3.285 7 O -0.968 6.968 8 O -0.985 6.985 9 C -0.745 4.745 10 C 0.037 3.963 11 C -0.266 4.266 12 C -0.046 4.046 13 C -0.244 4.244 14 C 0.168 3.832 15 C -0.472 4.472 16 H 0.121 0.879 17 C 0.092 3.908 18 N -0.792 5.792 19 Si 0.909 3.091 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.246 1.246 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.417 0.583 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.289 0.711 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 3.591 -10.561 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C -0.041 4.041 4 C 0.104 3.896 5 N -0.854 5.854 6 S 2.810 3.190 7 O -0.959 6.959 8 O -0.975 6.975 9 C -0.838 4.838 10 C 0.017 3.983 11 C -0.286 4.286 12 C -0.064 4.064 13 C -0.263 4.263 14 C 0.163 3.837 15 C -0.500 4.500 16 H 0.138 0.862 17 C -0.129 4.129 18 N -0.415 5.415 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.216 1.216 22 H -0.170 1.170 23 C -0.181 4.181 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.251 0.749 33 H 0.138 0.862 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.493 2.721 -10.773 11.647 hybrid contribution -1.268 1.636 1.109 2.348 sum -4.761 4.357 -9.664 11.621 Atomic orbital electron populations 1.22788 0.81991 1.02629 0.99067 1.88191 1.18971 1.25362 1.95055 1.23109 0.93165 0.86745 1.01050 1.20683 0.89845 0.93322 0.85745 1.55479 1.52093 1.39887 1.37957 1.00777 0.73580 0.71862 0.72809 1.93405 1.82353 1.72532 1.47599 1.93521 1.57779 1.76778 1.69432 1.30138 1.16495 1.24094 1.13051 1.20510 0.91011 0.91625 0.95132 1.20528 0.98019 1.10514 0.99513 1.20812 0.96006 0.94467 0.95145 1.21302 0.94622 1.08952 1.01462 1.17177 0.92452 0.86619 0.87403 1.20114 0.94780 1.02726 1.32393 0.86190 1.26101 0.97580 0.98352 0.90894 1.69651 1.28019 1.19489 1.24363 0.86404 0.81649 0.77177 0.81263 1.19283 1.21636 1.16981 1.23314 0.95368 1.03553 0.95830 1.22447 0.98078 0.95297 1.00600 1.22109 0.98425 0.97001 0.98365 1.22375 0.98030 0.95194 1.00298 0.93733 0.95257 0.89675 0.92067 0.92639 0.74851 0.86231 0.88435 0.88664 0.87613 0.90064 0.87167 0.91087 0.91996 0.91577 0.92030 0.91794 0.90866 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 8.65 101.05 0.87 1.34 16 2 O -0.36 -6.14 4.15 -58.74 -0.24 -6.38 16 3 C 0.04 0.60 4.58 37.15 0.17 0.77 16 4 C 0.19 3.00 0.78 -130.16 -0.10 2.90 16 5 N -1.10 -20.19 5.12 1.88 0.01 -20.18 16 6 S 2.71 58.89 4.53 -107.50 -0.49 58.40 16 7 O -0.97 -20.67 11.46 -66.78 -0.77 -21.43 16 8 O -0.98 -24.91 16.10 -57.17 -0.92 -25.83 16 9 C -0.74 -16.83 4.91 -38.87 -0.19 -17.02 16 10 C 0.04 0.76 5.81 -39.66 -0.23 0.53 16 11 C -0.27 -5.14 9.34 -39.29 -0.37 -5.51 16 12 C -0.05 -0.93 10.02 -39.66 -0.40 -1.33 16 13 C -0.24 -5.60 7.17 -38.87 -0.28 -5.88 16 14 C 0.17 4.07 5.03 -106.83 -0.54 3.54 16 15 C -0.47 -12.01 8.34 -37.74 -0.31 -12.32 16 16 H 0.12 3.32 6.09 -52.48 -0.32 3.00 16 17 C 0.09 2.24 5.47 -17.35 -0.09 2.14 16 18 N -0.79 -19.63 13.93 55.55 0.77 -18.85 16 19 Si 0.91 19.33 24.53 -169.99 -4.17 15.16 16 20 H -0.27 -5.61 6.47 56.52 0.37 -5.24 16 21 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.25 -5.27 6.99 56.52 0.39 -4.87 16 23 C -0.14 -2.09 5.36 -24.55 -0.13 -2.22 16 24 C -0.13 -1.60 6.80 -24.89 -0.17 -1.77 16 25 C -0.12 -1.38 6.80 -25.61 -0.17 -1.56 16 26 C -0.12 -1.53 6.03 -25.61 -0.15 -1.68 16 27 H 0.04 0.68 7.43 -51.92 -0.39 0.29 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 1.17 6.93 -51.93 -0.36 0.81 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.72 7.96 -51.93 -0.41 0.31 16 32 H 0.42 7.57 8.38 -34.47 -0.29 7.28 16 33 H 0.12 2.30 5.42 -52.49 -0.28 2.01 16 34 H 0.10 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.11 2.41 4.77 -52.48 -0.25 2.16 16 37 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.11 1.91 5.29 -51.93 -0.27 1.64 16 39 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.80 7.72 -51.93 -0.40 0.40 16 45 H 0.08 1.05 7.77 -51.93 -0.40 0.64 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -29.22 344.54 -9.07 -38.28 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.36 Total: 13.73 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: -2.10 Total: -38.08 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.78 Total: -39.03 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.93 Total: -53.64 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.17 Total: 15.16 kcal Atomic # 16 Polarization: 58.89 SS G_CDS: -0.49 Total: 58.40 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.22 -9.07 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.378 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds