Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00513 * 2 1 4 4 C 1.52993 * 109.47056 * 186.64322 * 3 2 1 5 5 N 1.46503 * 110.43669 * 293.05367 * 4 3 2 6 6 S 1.65598 * 119.99909 * 56.71097 * 5 4 3 7 7 O 1.42097 * 106.40225 * 27.74426 * 6 5 4 8 8 O 1.42100 * 106.39939 * 160.66565 * 6 5 4 9 9 C 1.76202 * 107.21645 * 274.20165 * 6 5 4 10 10 C 1.37638 * 120.12232 * 119.73297 * 9 6 5 11 11 C 1.38618 * 120.24520 * 179.72131 * 10 9 6 12 12 C 1.38655 * 120.50165 * 0.55689 * 11 10 9 13 13 C 1.37599 * 120.24617 * 359.72147 * 12 11 10 14 14 C 1.40694 * 120.13095 * 300.00514 * 9 6 5 15 15 C 1.41396 * 120.24380 * 359.97438 * 14 9 6 16 16 H 1.08006 * 119.99547 * 324.25741 * 15 14 9 17 17 C 1.39942 * 120.00481 * 144.26984 * 15 14 9 18 18 N 1.30816 * 120.00119 * 169.32413 * 17 15 14 19 19 Si 1.86807 * 119.99583 * 349.31863 * 17 15 14 20 20 H 1.48504 * 109.46996 * 87.13621 * 19 17 15 21 21 H 1.48502 * 109.47067 * 207.13510 * 19 17 15 22 22 H 1.48499 * 109.47157 * 327.13401 * 19 17 15 23 23 C 1.54893 * 110.48971 * 55.59544 * 4 3 2 24 24 C 1.55234 * 102.58934 * 156.67438 * 23 4 3 25 25 C 1.54259 * 104.23300 * 322.08231 * 24 23 4 26 26 C 1.53878 * 106.60111 * 23.61066 * 25 24 23 27 27 H 1.09012 * 109.46770 * 304.08180 * 1 2 3 28 28 H 1.09001 * 109.47223 * 64.07671 * 1 2 3 29 29 H 1.08991 * 109.47707 * 184.08437 * 1 2 3 30 30 H 1.09000 * 109.47202 * 66.63968 * 3 2 1 31 31 H 1.09003 * 109.46555 * 306.64469 * 3 2 1 32 32 H 0.96998 * 119.99384 * 236.71325 * 5 4 3 33 33 H 1.08001 * 119.87681 * 359.97127 * 10 9 6 34 34 H 1.08006 * 119.74784 * 180.25259 * 11 10 9 35 35 H 1.07997 * 119.87658 * 179.74370 * 12 11 10 36 36 H 1.08003 * 120.12664 * 179.97438 * 13 12 11 37 37 H 0.97010 * 120.00164 * 179.97438 * 18 17 15 38 38 H 1.09002 * 110.75158 * 275.07010 * 23 4 3 39 39 H 1.08997 * 110.75409 * 38.43557 * 23 4 3 40 40 H 1.09004 * 110.46403 * 203.39467 * 24 23 4 41 41 H 1.08999 * 110.46719 * 80.77536 * 24 23 4 42 42 H 1.08996 * 110.03674 * 264.32947 * 25 24 23 43 43 H 1.09006 * 110.03312 * 142.89690 * 25 24 23 44 44 H 1.08990 * 110.03565 * 240.71854 * 26 25 24 45 45 H 1.09007 * 110.03184 * 119.27946 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5266 1.1884 -0.1669 5 7 4.1235 0.5544 1.0113 6 16 3.6088 -0.9431 1.4958 7 8 3.1400 -1.6035 0.3282 8 8 4.6330 -1.4695 2.3283 9 6 2.2024 -0.7019 2.5296 10 6 0.9874 -1.2468 2.1811 11 6 -0.1193 -1.0634 2.9954 12 6 -0.0193 -0.3212 4.1623 13 6 1.1840 0.2375 4.5273 14 6 2.3157 0.0531 3.7113 15 6 3.5575 0.6220 4.0767 16 1 4.4757 0.0922 3.8701 17 6 3.5968 1.8712 4.7063 18 7 4.7142 2.3044 5.2308 19 14 2.0537 2.9200 4.7975 20 1 1.2717 2.5463 6.0034 21 1 2.4335 4.3534 4.8785 22 1 1.2292 2.6943 3.5832 23 6 3.8710 0.3867 -1.4467 24 6 5.3069 0.8760 -1.7763 25 6 5.2840 2.3792 -1.4308 26 6 4.1521 2.5780 -0.4075 27 1 -0.3633 0.5760 0.8513 28 1 -0.3634 0.4493 -0.9243 29 1 -0.3634 -1.0249 0.0732 30 1 1.7859 1.8031 0.9434 31 1 1.5978 1.8868 -0.8246 32 1 4.8202 1.0119 1.5075 33 1 0.8969 -1.8226 1.2719 34 1 -1.0679 -1.4980 2.7163 35 1 -0.8890 -0.1813 4.7871 36 1 1.2596 0.8157 5.4364 37 1 4.7415 3.1705 5.6669 38 1 3.8617 -0.6845 -1.2456 39 1 3.1830 0.6351 -2.2548 40 1 5.5254 0.7310 -2.8343 41 1 6.0384 0.3538 -1.1596 42 1 5.0837 2.9655 -2.3275 43 1 6.2379 2.6767 -0.9950 44 1 3.4026 3.2605 -0.8077 45 1 4.5567 2.9718 0.5250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601462344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -116.798809 kcal Electronic energy + Delta-G solvation = -30703.389354 eV Core-core repulsion = 26811.874912 eV Total energy + Delta-G solvation = -3891.514442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.37080 -39.57567 -38.01144 -37.62286 -36.48625 -35.57237 -33.96461 -32.41213 -31.72970 -30.18401 -29.54601 -27.44826 -26.93332 -25.02154 -23.60795 -22.83638 -21.57942 -20.94930 -19.85448 -19.50817 -18.36870 -18.08187 -17.53455 -17.08779 -16.78138 -16.39865 -16.20207 -16.10401 -15.86305 -15.53745 -15.21025 -15.18394 -14.58887 -14.22137 -14.10521 -13.88283 -13.55079 -13.42081 -13.14543 -12.96538 -12.85045 -12.78644 -12.57675 -12.43934 -12.30269 -12.18497 -12.06363 -12.01788 -11.93884 -11.75561 -11.63193 -11.45141 -11.20155 -11.15820 -10.90116 -10.41310 -10.12459 -9.76979 -9.43355 -8.91249 -6.69301 0.04142 0.46739 0.84933 1.23736 1.33722 1.43673 2.06407 2.43745 2.56558 2.89563 3.16605 3.39854 3.64318 3.81437 3.91891 4.12491 4.24221 4.33696 4.34460 4.35767 4.49131 4.63167 4.65720 4.66003 4.70087 4.73626 4.81134 4.83356 4.86984 4.99601 5.01084 5.05641 5.12096 5.22331 5.24915 5.30861 5.44716 5.51697 5.54599 5.62593 5.69935 5.77027 5.90015 6.13861 6.31079 6.36304 6.43120 6.59335 6.75704 8.14230 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.007277 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.674632 B = 3846.788913 C = 4667.608526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.036 3.964 4 C 0.181 3.819 5 N -1.094 6.094 6 S 2.722 3.278 7 O -0.967 6.967 8 O -1.032 7.032 9 C -0.752 4.752 10 C 0.032 3.968 11 C -0.247 4.247 12 C -0.043 4.043 13 C -0.267 4.267 14 C 0.152 3.848 15 C -0.499 4.499 16 H 0.082 0.918 17 C 0.062 3.938 18 N -0.833 5.833 19 Si 0.958 3.042 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.248 1.248 23 C -0.141 4.141 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.118 4.118 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.415 0.585 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.297 0.703 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 4.661 -12.471 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C -0.042 4.042 4 C 0.092 3.908 5 N -0.851 5.851 6 S 2.817 3.183 7 O -0.958 6.958 8 O -1.022 7.022 9 C -0.845 4.845 10 C 0.012 3.988 11 C -0.266 4.266 12 C -0.061 4.061 13 C -0.287 4.287 14 C 0.148 3.852 15 C -0.528 4.528 16 H 0.100 0.900 17 C -0.155 4.155 18 N -0.457 5.457 19 Si 0.782 3.218 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.172 1.172 23 C -0.180 4.180 24 C -0.165 4.165 25 C -0.153 4.153 26 C -0.157 4.157 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.117 0.883 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.457 3.778 -12.689 14.730 hybrid contribution -0.471 1.151 1.581 2.011 sum -6.927 4.930 -11.108 13.989 Atomic orbital electron populations 1.22936 0.80774 1.03226 1.00120 1.88151 1.20458 1.26229 1.95187 1.23188 0.93185 0.86577 1.01292 1.21100 0.90128 0.94836 0.84701 1.55275 1.51958 1.38982 1.38860 1.00349 0.73044 0.72538 0.72335 1.93405 1.82227 1.73190 1.46938 1.93459 1.59477 1.78497 1.70788 1.30326 1.17587 1.23703 1.12898 1.20778 0.90662 0.91425 0.95891 1.21013 0.99097 1.08404 0.98134 1.21243 0.96169 0.93051 0.95684 1.21420 0.95406 1.10267 1.01579 1.17312 0.92577 0.87145 0.88164 1.19925 0.94088 1.03823 1.34978 0.90014 1.26670 0.99872 0.98696 0.90250 1.69683 1.29556 1.20486 1.26010 0.85644 0.78700 0.76397 0.81107 1.18701 1.20237 1.17154 1.23258 0.97166 1.01575 0.95970 1.22461 0.96331 0.96074 1.01611 1.22103 0.97992 0.96195 0.99004 1.22422 0.99044 0.93798 1.00448 0.94568 0.92600 0.89026 0.94158 0.89251 0.75104 0.84845 0.84381 0.84988 0.87908 0.89269 0.90127 0.89029 0.89832 0.93410 0.89327 0.91654 0.88283 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 8.65 113.37 0.98 1.64 16 2 O -0.38 -12.39 4.15 -126.50 -0.53 -12.92 16 3 C 0.04 1.06 4.58 71.98 0.33 1.39 16 4 C 0.18 5.46 0.78 4.68 0.00 5.46 16 5 N -1.09 -41.63 5.12 -147.97 -0.76 -42.38 16 6 S 2.72 122.29 4.53 -56.49 -0.26 122.03 16 7 O -0.97 -41.77 11.46 -118.82 -1.36 -43.13 16 8 O -1.03 -55.64 16.10 -128.00 -2.06 -57.70 16 9 C -0.75 -34.20 4.91 22.73 0.11 -34.08 16 10 C 0.03 1.25 5.81 22.22 0.13 1.38 16 11 C -0.25 -8.64 9.34 22.46 0.21 -8.43 16 12 C -0.04 -1.62 10.02 22.22 0.22 -1.40 16 13 C -0.27 -12.01 7.17 22.73 0.16 -11.85 16 14 C 0.15 7.50 5.03 -21.29 -0.11 7.39 16 15 C -0.50 -26.69 8.34 23.46 0.20 -26.50 16 16 H 0.08 4.90 6.09 -2.91 -0.02 4.89 16 17 C 0.06 3.14 5.47 85.26 0.47 3.60 16 18 N -0.83 -43.09 13.93 21.82 0.30 -42.78 16 19 Si 0.96 39.82 24.53 68.60 1.68 41.50 16 20 H -0.26 -10.52 6.47 99.48 0.64 -9.88 16 21 H -0.28 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.25 -10.24 6.99 99.48 0.70 -9.55 16 23 C -0.14 -3.97 5.36 32.01 0.17 -3.79 16 24 C -0.13 -3.05 6.80 31.79 0.22 -2.83 16 25 C -0.12 -2.36 6.80 31.32 0.21 -2.15 16 26 C -0.12 -2.81 6.03 31.32 0.19 -2.62 16 27 H 0.04 0.99 7.43 -2.38 -0.02 0.97 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 2.22 6.93 -2.39 -0.02 2.20 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.00 7.96 -2.39 -0.02 1.99 16 32 H 0.41 16.16 8.38 -96.74 -0.81 15.34 16 33 H 0.13 4.84 5.42 -2.91 -0.02 4.83 16 34 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 36 H 0.10 4.62 4.77 -2.91 -0.01 4.60 16 37 H 0.30 13.73 8.30 -92.70 -0.77 12.96 16 38 H 0.08 2.79 5.29 -2.39 -0.01 2.77 16 39 H 0.09 2.17 8.06 -2.39 -0.02 2.15 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.10 1.85 7.72 -2.39 -0.02 1.83 16 45 H 0.07 1.76 7.77 -2.38 -0.02 1.75 16 Total: -1.00 -66.24 344.54 0.65 -65.59 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: 0.13 Total: 42.56 kcal Atomic # 6 Polarization: -76.27 SS G_CDS: 3.49 Total: -72.77 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -0.45 Total: -85.17 kcal Atomic # 8 Polarization: -109.80 SS G_CDS: -3.95 Total: -113.75 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.68 Total: 41.50 kcal Atomic # 16 Polarization: 122.29 SS G_CDS: -0.26 Total: 122.03 kcal Total: -66.24 0.65 -65.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.209 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds