Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 119.99818 * 2 1 4 4 H 1.09002 * 109.46929 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47259 * 60.00270 * 3 2 1 6 6 C 1.53005 * 109.47432 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.46838 * 59.99769 * 6 5 3 8 8 C 1.52998 * 109.47298 * 300.00314 * 7 6 5 9 9 C 1.52999 * 109.47445 * 299.99902 * 3 2 1 10 10 H 1.09002 * 109.47106 * 60.00049 * 9 3 2 11 11 O 1.42899 * 109.47102 * 300.00297 * 9 3 2 12 12 S 1.65596 * 119.99983 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40327 * 156.45675 * 12 2 1 14 14 O 1.42109 * 106.40162 * 23.53910 * 12 2 1 15 15 C 1.76199 * 107.21986 * 270.00022 * 12 2 1 16 16 C 1.38655 * 119.87652 * 270.02279 * 15 12 2 17 17 C 1.38614 * 120.50117 * 179.97438 * 16 15 12 18 18 C 1.37633 * 120.24891 * 0.02562 * 17 16 15 19 19 C 1.40707 * 119.74749 * 359.74473 * 18 17 16 20 20 C 1.41387 * 120.24933 * 180.27694 * 19 18 17 21 21 H 1.08004 * 119.99845 * 330.44652 * 20 19 18 22 22 C 1.39944 * 120.00241 * 150.44149 * 20 19 18 23 23 N 1.30820 * 120.00163 * 161.51911 * 22 20 19 24 24 Si 1.86805 * 119.99811 * 341.51625 * 22 20 19 25 25 H 1.48498 * 109.46722 * 95.40970 * 24 22 20 26 26 H 1.48501 * 109.47136 * 215.41076 * 24 22 20 27 27 H 1.48503 * 109.47111 * 335.40752 * 24 22 20 28 28 C 1.37605 * 119.87593 * 90.00080 * 15 12 2 29 29 H 1.09006 * 109.46905 * 269.99800 * 1 2 3 30 30 H 1.08994 * 109.47175 * 29.99910 * 1 2 3 31 31 H 1.08998 * 109.47142 * 150.00390 * 1 2 3 32 32 H 1.08996 * 109.47181 * 299.99647 * 5 3 2 33 33 H 1.09004 * 109.47408 * 59.99934 * 5 3 2 34 34 H 1.08996 * 109.47381 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.46865 * 300.00105 * 6 5 3 36 36 H 1.09002 * 109.47305 * 60.00140 * 7 6 5 37 37 H 1.08996 * 109.47087 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47261 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.46801 * 300.00135 * 8 7 6 40 40 H 0.96696 * 113.99961 * 179.97438 * 11 9 3 41 41 H 1.07994 * 119.74650 * 359.97438 * 16 15 12 42 42 H 1.07999 * 119.87412 * 179.97438 * 17 16 15 43 43 H 1.08006 * 120.12904 * 180.02562 * 18 17 16 44 44 H 0.97001 * 119.99807 * 179.97438 * 23 22 20 45 45 H 1.07999 * 120.12190 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2692 1.0695 0.0005 5 6 1.8279 2.0710 1.2492 6 6 2.5934 3.3958 1.2496 7 6 2.2242 4.1983 0.0003 8 6 2.5938 3.3961 -1.2489 9 6 1.8279 2.0710 -1.2492 10 1 0.7563 2.2702 -1.2492 11 8 2.1731 1.3217 -2.4160 12 16 2.2930 -1.4341 0.0006 13 8 3.5759 -1.1570 -0.5440 14 8 1.4113 -2.4068 -0.5434 15 6 2.5538 -1.8851 1.6839 16 6 3.6971 -1.4603 2.3435 17 6 3.9150 -1.8071 3.6678 18 6 2.9968 -2.5789 4.3426 19 6 1.8306 -3.0116 3.6848 20 6 0.8774 -3.8000 4.3695 21 1 1.1929 -4.4587 5.1652 22 6 -0.4748 -3.7267 4.0165 23 7 -1.2960 -4.6814 4.3709 24 14 -1.1070 -2.2657 3.0392 25 1 -1.1225 -2.6063 1.5939 26 1 -2.4839 -1.9312 3.4838 27 1 -0.2173 -1.0979 3.2631 28 6 1.6220 -2.6571 2.3389 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 0.7563 2.2702 1.2493 33 1 2.0913 1.4994 2.1393 34 1 2.3297 3.9675 2.1394 35 1 3.6649 3.1962 1.2498 36 1 1.1526 4.3979 0.0001 37 1 2.7699 5.1419 0.0003 38 1 2.3313 3.9680 -2.1389 39 1 3.6654 3.1965 -1.2487 40 1 1.9660 1.7704 -3.2471 41 1 4.4231 -0.8548 1.8216 42 1 4.8092 -1.4711 4.1717 43 1 3.1684 -2.8476 5.3745 44 1 -2.2333 -4.6304 4.1265 45 1 0.7319 -2.9862 1.8233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601484678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = -138.334935 kcal Electronic energy + Delta-G solvation = -29296.086439 eV Core-core repulsion = 25403.638120 eV Total energy + Delta-G solvation = -3892.448319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43524 -39.71850 -38.41149 -36.99937 -36.75086 -36.00650 -35.65569 -32.55746 -31.94872 -31.01612 -30.00124 -27.31424 -27.18393 -23.98387 -23.55964 -23.12484 -22.85414 -20.69684 -20.14343 -19.58883 -18.72831 -18.41718 -18.12820 -17.46798 -16.94071 -16.64217 -16.34921 -15.68786 -15.59479 -15.37610 -15.16914 -14.88769 -14.67477 -14.56077 -14.29784 -14.06563 -13.77690 -13.72786 -13.71133 -13.53750 -13.22256 -13.02085 -12.99361 -12.87741 -12.69146 -12.64687 -12.61231 -12.21250 -12.12913 -11.82707 -11.64213 -11.58552 -11.42468 -11.18702 -11.12568 -10.75273 -10.13501 -9.96292 -9.67569 -8.99887 -6.62630 -0.66747 0.12867 0.64299 1.16983 1.24324 1.35547 1.90701 2.02595 2.38737 2.67157 3.16020 3.26063 3.27546 3.72898 3.81466 3.94544 4.08948 4.10202 4.19540 4.27935 4.29430 4.35906 4.38860 4.46759 4.50450 4.57451 4.65452 4.68666 4.77857 4.80295 4.86088 4.96940 5.08618 5.18601 5.19601 5.20672 5.30384 5.31547 5.35360 5.36161 5.53851 5.61570 5.63215 5.68945 6.06048 6.17888 6.53892 6.68891 6.97349 8.07508 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014542 B = 0.004719 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.048525 B = 5931.684733 C = 6071.954719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.984 5.984 3 C 0.148 3.852 4 H 0.090 0.910 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.114 4.114 8 C -0.145 4.145 9 C 0.098 3.902 10 H 0.077 0.923 11 O -0.585 6.585 12 S 2.693 3.307 13 O -0.974 6.974 14 O -0.997 6.997 15 C -0.635 4.635 16 C -0.135 4.135 17 C -0.094 4.094 18 C -0.165 4.165 19 C 0.057 3.943 20 C -0.483 4.483 21 H 0.068 0.932 22 C 0.050 3.950 23 N -0.839 5.839 24 Si 0.919 3.081 25 H -0.255 1.255 26 H -0.260 1.260 27 H -0.233 1.233 28 C -0.160 4.160 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.393 0.607 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.122 0.878 44 H 0.296 0.704 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 21.697 -8.906 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.822 5.822 3 C 0.042 3.958 4 H 0.108 0.892 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.183 4.183 9 C 0.038 3.962 10 H 0.095 0.905 11 O -0.393 6.393 12 S 2.788 3.212 13 O -0.964 6.964 14 O -0.987 6.987 15 C -0.724 4.724 16 C -0.156 4.156 17 C -0.113 4.113 18 C -0.184 4.184 19 C 0.053 3.947 20 C -0.513 4.513 21 H 0.086 0.914 22 C -0.166 4.166 23 N -0.465 5.465 24 Si 0.741 3.259 25 H -0.180 1.180 26 H -0.186 1.186 27 H -0.156 1.156 28 C -0.181 4.181 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.243 0.757 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.140 0.860 44 H 0.106 0.894 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.236 20.621 -9.158 22.794 hybrid contribution -0.797 -0.218 0.353 0.898 sum 2.440 20.402 -8.805 22.355 Atomic orbital electron populations 1.21819 0.77832 1.05267 1.02370 1.57155 1.15442 1.20186 1.89412 1.21238 0.96473 0.82314 0.95750 0.89192 1.21962 1.02386 0.96791 0.95828 1.21575 1.00198 0.94437 0.99450 1.21518 1.02487 0.98474 0.92673 1.22254 1.00900 0.94936 1.00243 1.22208 0.99049 0.90441 0.84514 0.90522 1.86599 1.87358 1.48442 1.16913 1.01542 0.72742 0.72735 0.74151 1.93485 1.40819 1.84714 1.77361 1.93483 1.66908 1.60297 1.78053 1.30426 1.04535 1.12637 1.24786 1.20602 0.95834 1.03340 0.95797 1.21224 0.98860 0.97121 0.94093 1.21627 0.96208 1.00932 0.99658 1.17951 0.94218 0.91224 0.91282 1.19492 0.92082 1.21835 1.17844 0.91398 1.26762 0.96996 0.98468 0.94365 1.69696 1.06968 1.31005 1.38832 0.86194 0.78956 0.81085 0.79688 1.18048 1.18590 1.15563 1.20718 0.99035 1.03255 0.95051 0.92948 0.86689 0.91283 0.89900 0.91964 0.90000 0.91714 0.90665 0.89929 0.89147 0.91746 0.75721 0.84465 0.83154 0.85974 0.89377 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 9.72 127.77 1.24 3.23 16 2 N -0.98 -31.15 2.94 -516.52 -1.52 -32.67 16 3 C 0.15 3.72 2.20 44.99 0.10 3.82 16 4 H 0.09 2.55 6.91 -2.39 -0.02 2.53 16 5 C -0.13 -2.67 5.20 30.60 0.16 -2.51 16 6 C -0.12 -1.73 5.92 30.60 0.18 -1.55 16 7 C -0.11 -1.25 5.92 30.60 0.18 -1.06 16 8 C -0.14 -1.91 5.55 30.61 0.17 -1.74 16 9 C 0.10 1.86 2.78 30.61 0.09 1.94 16 10 H 0.08 1.17 6.66 -2.39 -0.02 1.15 16 11 O -0.58 -13.26 13.18 -148.98 -1.96 -15.22 16 12 S 2.69 110.73 5.68 -56.49 -0.32 110.41 16 13 O -0.97 -41.35 15.83 -128.00 -2.03 -43.38 16 14 O -1.00 -47.13 15.87 -128.00 -2.03 -49.16 16 15 C -0.63 -27.99 5.97 22.22 0.13 -27.86 16 16 C -0.14 -5.28 9.53 22.46 0.21 -5.07 16 17 C -0.09 -3.52 10.02 22.22 0.22 -3.30 16 18 C -0.16 -7.20 9.80 22.73 0.22 -6.98 16 19 C 0.06 2.89 5.10 -21.29 -0.11 2.79 16 20 C -0.48 -26.99 9.57 23.46 0.22 -26.77 16 21 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 22 C 0.05 2.70 5.40 85.26 0.46 3.16 16 23 N -0.84 -46.26 13.93 21.83 0.30 -45.96 16 24 Si 0.92 41.36 23.68 68.60 1.62 42.99 16 25 H -0.26 -11.47 6.70 99.48 0.67 -10.80 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.23 -10.05 6.88 99.48 0.68 -9.36 16 28 C -0.16 -7.97 6.65 22.73 0.15 -7.82 16 29 H 0.05 1.45 7.27 -2.38 -0.02 1.43 16 30 H 0.11 2.17 6.43 -2.39 -0.02 2.16 16 31 H 0.07 2.14 7.02 -2.39 -0.02 2.12 16 32 H 0.08 1.48 7.67 -2.39 -0.02 1.46 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.39 4.86 9.08 -74.06 -0.67 4.19 16 41 H 0.14 4.63 7.60 -2.91 -0.02 4.61 16 42 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.30 14.64 8.30 -92.71 -0.77 13.87 16 45 H 0.10 5.24 4.29 -2.91 -0.01 5.23 16 Total: -1.00 -72.38 363.52 -2.02 -74.40 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.27 Total: 28.30 kcal Atomic # 6 Polarization: -73.35 SS G_CDS: 3.64 Total: -69.71 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.21 Total: -78.63 kcal Atomic # 8 Polarization: -101.73 SS G_CDS: -6.02 Total: -107.75 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.62 Total: 42.99 kcal Atomic # 16 Polarization: 110.73 SS G_CDS: -0.32 Total: 110.41 kcal Total: -72.38 -2.02 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601484678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.933 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds