Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47075 * 2 1 4 4 C 1.53003 * 109.46839 * 240.00168 * 2 1 3 5 5 N 1.46499 * 109.47178 * 65.00215 * 4 2 1 6 6 C 1.34773 * 120.00408 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99730 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00393 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.47163 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.47122 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99916 * 359.97438 * 10 9 8 12 12 C 1.37870 * 119.99924 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00364 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00020 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47056 * 90.00299 * 14 12 10 16 16 H 1.48501 * 109.47045 * 210.00374 * 14 12 10 17 17 H 1.48504 * 109.46999 * 330.00155 * 14 12 10 18 18 C 1.50700 * 109.47090 * 120.00101 * 2 1 3 19 19 C 1.38227 * 119.99928 * 239.99733 * 18 2 1 20 20 C 1.38243 * 119.99892 * 179.97438 * 19 18 2 21 21 C 1.38228 * 119.99666 * 359.97421 * 20 19 18 22 22 S 1.76203 * 119.99649 * 180.02562 * 21 20 19 23 23 C 1.81404 * 104.44838 * 90.00553 * 22 21 20 24 24 O 1.42100 * 104.28012 * 333.93528 * 22 21 20 25 25 O 1.42100 * 104.27885 * 206.07639 * 22 21 20 26 26 C 1.38234 * 120.00757 * 0.28176 * 21 20 19 27 27 C 1.38234 * 119.99832 * 59.98211 * 18 2 1 28 28 H 1.09000 * 109.47150 * 299.99928 * 1 2 3 29 29 H 1.09005 * 109.47357 * 59.99698 * 1 2 3 30 30 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46575 * 184.99621 * 4 2 1 32 32 H 1.08993 * 109.47167 * 304.99881 * 4 2 1 33 33 H 0.97003 * 120.00216 * 359.97438 * 5 4 2 34 34 H 1.09006 * 109.46798 * 299.99236 * 8 6 5 35 35 H 1.09002 * 109.47518 * 59.99539 * 8 6 5 36 36 H 1.08994 * 109.46916 * 299.99166 * 9 8 6 37 37 H 1.08993 * 109.47167 * 59.99554 * 9 8 6 38 38 H 0.96998 * 120.00447 * 179.97438 * 13 12 10 39 39 H 1.08000 * 120.00145 * 359.97438 * 19 18 2 40 40 H 1.08001 * 119.99594 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.47124 * 299.99881 * 23 22 21 42 42 H 1.09001 * 109.46975 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47147 * 59.99966 * 23 22 21 44 44 H 1.08001 * 120.00506 * 179.72371 * 26 21 20 45 45 H 1.07998 * 120.00389 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 1.9963 -0.4129 -3.6660 7 8 2.6271 -1.4426 -3.7793 8 6 1.5982 0.3657 -4.8932 9 6 2.1080 -0.3556 -6.1425 10 6 1.7093 0.4228 -7.3698 11 1 1.1480 1.3399 -7.2689 12 6 2.0610 -0.0359 -8.6215 13 7 2.7441 -1.1530 -8.7445 14 14 1.5674 0.9292 -10.1428 15 1 2.6331 1.9086 -10.4750 16 1 1.3805 -0.0045 -11.2823 17 1 0.2962 1.6507 -9.8804 18 6 2.0323 -0.7104 1.2304 19 6 2.8271 -0.0387 2.1403 20 6 3.2874 -0.6902 3.2693 21 6 2.9525 -2.0133 3.4885 22 16 3.5387 -2.8436 4.9279 23 6 2.2549 -2.5485 6.1750 24 8 4.7331 -2.1532 5.2688 25 8 3.5660 -4.2145 4.5550 26 6 2.1621 -2.6867 2.5760 27 6 1.6981 -2.0338 1.4493 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2952 33 1 1.1482 0.8592 -2.3518 34 1 0.5118 0.4439 -4.9372 35 1 2.0328 1.3643 -4.8469 36 1 3.1942 -0.4341 -6.0988 37 1 1.6730 -1.3539 -6.1886 38 1 2.9912 -1.4760 -9.6251 39 1 3.0884 0.9952 1.9692 40 1 3.9080 -0.1652 3.9804 41 1 2.1474 -1.4763 6.3392 42 1 2.5384 -3.0322 7.1098 43 1 1.3076 -2.9594 5.8256 44 1 1.9042 -3.7217 2.7451 45 1 1.0766 -2.5584 0.7388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602201439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -99.365633 kcal Electronic energy + Delta-G solvation = -25842.212803 eV Core-core repulsion = 21951.454320 eV Total energy + Delta-G solvation = -3890.758483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21187 -39.08296 -37.52253 -36.44051 -36.23956 -33.45974 -33.24295 -31.51143 -31.02114 -30.25885 -29.79525 -27.07817 -25.39850 -24.00386 -23.27507 -21.58791 -20.68720 -19.67468 -19.47645 -18.25430 -16.96978 -16.69909 -16.63651 -16.05790 -15.83153 -15.45077 -15.35091 -15.10439 -14.90328 -14.40747 -14.22850 -13.96856 -13.84060 -13.73585 -13.65328 -13.22993 -13.10448 -12.96736 -12.49780 -12.40123 -12.31478 -12.19283 -11.89549 -11.80289 -11.60589 -11.48385 -11.17043 -11.16570 -10.96747 -10.93086 -10.60305 -9.96731 -9.67674 -9.58512 -9.45385 -9.19099 -9.02158 -8.82976 -8.32481 -5.96374 -4.01045 -0.41068 0.38118 0.89125 2.41359 2.96592 3.23739 3.32858 3.38428 3.40852 3.46317 3.51907 3.64774 4.18468 4.22873 4.27203 4.37454 4.47312 4.47919 4.60626 4.70891 4.88432 4.93476 5.03117 5.07872 5.30539 5.34593 5.38472 5.40760 5.49968 5.57544 5.62714 5.64473 5.73052 5.83169 5.90705 6.10999 6.21100 6.22372 6.40525 6.66126 6.87996 7.73745 7.84231 7.85693 8.06808 8.37987 8.75854 9.07620 9.62562 11.14540 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.001656 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.163740 B =16908.827833 C =17293.590325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 H 0.091 0.909 4 C 0.127 3.873 5 N -0.744 5.744 6 C 0.509 3.491 7 O -0.533 6.533 8 C -0.130 4.130 9 C 0.036 3.964 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.016 4.016 19 C -0.135 4.135 20 C -0.023 4.023 21 C -0.666 4.666 22 S 2.500 3.500 23 C -0.650 4.650 24 O -0.938 6.938 25 O -0.937 6.937 26 C -0.021 4.021 27 C -0.132 4.132 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.142 0.858 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 2.423 33.721 34.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 H 0.109 0.891 4 C 0.003 3.997 5 N -0.399 5.399 6 C 0.297 3.703 7 O -0.408 6.408 8 C -0.170 4.170 9 C -0.001 4.001 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.017 4.017 19 C -0.154 4.154 20 C -0.041 4.041 21 C -0.753 4.753 22 S 2.680 3.320 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.934 6.934 26 C -0.040 4.040 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.160 0.840 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.504 1.067 33.562 33.880 hybrid contribution -1.192 1.397 -1.016 2.099 sum -5.696 2.465 32.546 33.133 Atomic orbital electron populations 1.21880 0.93051 1.02913 1.02430 1.20546 0.97108 0.99929 0.91540 0.89118 1.21258 1.00190 0.95318 0.82943 1.46198 1.59854 1.28107 1.05760 1.21582 0.78281 0.85920 0.84477 1.90683 1.38919 1.24626 1.86582 1.21865 1.01944 0.99811 0.93331 1.18902 0.97204 0.95549 0.88464 1.21218 1.35658 1.08564 0.91175 0.92607 1.25030 0.95192 0.95049 0.99136 1.69996 1.38359 1.20927 1.23501 0.86586 0.78827 0.79748 0.82734 1.20678 1.21219 1.19913 1.20092 0.93278 0.93941 0.94348 1.21225 0.98790 1.00708 0.94649 1.20921 0.94193 0.92028 0.97000 1.30473 1.15946 1.07066 1.21769 1.05135 0.76260 0.74727 0.75863 1.30232 1.19408 1.12479 1.17885 1.93591 1.41198 1.74965 1.83801 1.93599 1.86444 1.31644 1.81722 1.20950 0.91518 0.99277 0.92252 1.21224 1.01339 0.94447 0.98088 0.92183 0.91436 0.91910 0.91582 0.91435 0.76917 0.90250 0.90246 0.95828 0.95822 0.92932 0.84856 0.84075 0.84993 0.85030 0.84944 0.83985 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.88 37.16 0.33 -0.64 16 2 C -0.07 -0.56 2.60 -91.77 -0.24 -0.80 16 3 H 0.09 0.60 7.88 -51.93 -0.41 0.20 16 4 C 0.13 1.48 4.80 -4.04 -0.02 1.46 16 5 N -0.74 -9.75 5.28 -60.30 -0.32 -10.06 16 6 C 0.51 9.61 7.83 -10.99 -0.09 9.52 16 7 O -0.53 -12.61 15.98 5.55 0.09 -12.52 16 8 C -0.13 -2.58 5.64 -27.88 -0.16 -2.74 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.53 -14.96 9.11 -34.44 -0.31 -15.28 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.50 13.29 55.43 0.74 -26.77 16 14 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C -0.02 -0.13 4.78 -104.63 -0.50 -0.63 16 19 C -0.13 -1.01 9.67 -39.58 -0.38 -1.39 16 20 C -0.02 -0.17 9.47 -39.58 -0.37 -0.54 16 21 C -0.67 -5.01 5.66 -39.59 -0.22 -5.24 16 22 S 2.50 16.30 5.80 -107.50 -0.62 15.67 16 23 C -0.65 -1.37 10.80 101.05 1.09 -0.28 16 24 O -0.94 -9.18 17.13 -57.54 -0.99 -10.17 16 25 O -0.94 -9.42 17.12 -57.54 -0.99 -10.40 16 26 C -0.02 -0.17 9.47 -39.58 -0.37 -0.54 16 27 C -0.13 -1.09 8.76 -39.58 -0.35 -1.44 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.44 7.18 -51.93 -0.37 0.07 16 30 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.85 7.57 -51.93 -0.39 0.45 16 33 H 0.40 3.89 7.65 -40.82 -0.31 3.58 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.13 0.74 7.95 -52.49 -0.42 0.32 16 40 H 0.14 0.79 7.57 -52.49 -0.40 0.39 16 41 H 0.13 0.08 8.14 -51.92 -0.42 -0.34 16 42 H 0.13 0.11 8.14 -51.92 -0.42 -0.31 16 43 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 44 H 0.14 0.91 7.57 -52.49 -0.40 0.51 16 45 H 0.14 0.99 7.16 -52.49 -0.38 0.61 16 LS Contribution 389.81 15.07 5.87 5.87 Total: -1.00 -40.34 389.81 -9.85 -50.18 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.80 Total: -2.34 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.81 Total: -16.09 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.42 Total: -36.83 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.88 Total: -33.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 16.30 SS G_CDS: -0.62 Total: 15.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -40.34 -9.85 -50.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602201439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.181 kcal (2) G-P(sol) polarization free energy of solvation -40.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds