Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 C 1.50701 * 109.46991 * 239.99897 * 2 1 3 5 5 H 1.07992 * 120.00291 * 239.99998 * 4 2 1 6 6 C 1.37878 * 119.99754 * 60.00433 * 4 2 1 7 7 N 1.31516 * 120.00380 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47276 * 119.99626 * 8 6 4 11 11 H 1.48499 * 109.47420 * 239.99860 * 8 6 4 12 12 N 1.46500 * 109.46988 * 120.00387 * 2 1 3 13 13 C 1.46493 * 120.00047 * 58.88987 * 12 2 1 14 14 C 1.34777 * 119.99885 * 238.89483 * 12 2 1 15 15 O 1.21274 * 120.00052 * 183.67893 * 14 12 2 16 16 C 1.50703 * 120.00080 * 3.67291 * 14 12 2 17 17 H 1.09002 * 109.46951 * 321.34145 * 16 14 12 18 18 C 1.53003 * 109.47154 * 81.33765 * 16 14 12 19 19 C 1.50695 * 109.47543 * 201.34109 * 16 14 12 20 20 C 1.38238 * 119.99863 * 299.73359 * 19 16 14 21 21 C 1.38231 * 120.00113 * 179.81117 * 20 19 16 22 22 C 1.38234 * 119.99885 * 0.40862 * 21 20 19 23 23 S 1.76198 * 120.00167 * 179.79362 * 22 21 20 24 24 C 1.81404 * 104.45176 * 270.02492 * 23 22 21 25 25 O 1.42099 * 104.27702 * 26.09724 * 23 22 21 26 26 O 1.42101 * 104.27920 * 153.95195 * 23 22 21 27 27 C 1.38237 * 120.00296 * 359.81870 * 22 21 20 28 28 C 1.38230 * 120.00190 * 119.99848 * 19 16 14 29 29 H 1.09000 * 109.47206 * 300.00029 * 1 2 3 30 30 H 1.09005 * 109.46872 * 59.99735 * 1 2 3 31 31 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00352 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47222 * 266.15761 * 13 12 2 34 34 H 1.09001 * 109.47510 * 26.16112 * 13 12 2 35 35 H 1.09002 * 109.47385 * 146.15960 * 13 12 2 36 36 H 1.08997 * 109.47327 * 173.27647 * 18 16 14 37 37 H 1.09003 * 109.46621 * 53.27645 * 18 16 14 38 38 H 1.08992 * 109.47396 * 293.28171 * 18 16 14 39 39 H 1.08001 * 119.99921 * 359.97438 * 20 19 16 40 40 H 1.08001 * 120.00678 * 180.20394 * 21 20 19 41 41 H 1.09000 * 109.47216 * 59.99766 * 24 23 22 42 42 H 1.09000 * 109.47151 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47108 * 299.99946 * 24 23 22 44 44 H 1.07999 * 120.00381 * 179.97438 * 27 22 21 45 45 H 1.08007 * 120.00193 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6445 -2.0859 1.4402 14 6 2.8115 -0.0424 2.0720 15 8 3.2700 -0.6329 3.0269 16 6 3.1286 1.4162 1.8648 17 1 3.2726 1.6092 0.8017 18 6 1.9700 2.2691 2.3855 19 6 4.3878 1.7680 2.6142 20 6 4.4421 1.6109 3.9865 21 6 5.5984 1.9299 4.6735 22 6 6.6976 2.4140 3.9893 23 16 8.1697 2.8257 4.8656 24 6 7.9597 4.5724 5.3079 25 8 8.1262 2.0085 6.0272 26 8 9.2042 2.6760 3.9029 27 6 6.6418 2.5755 2.6175 28 6 5.4867 2.2529 1.9301 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7082 1.1610 -3.4844 33 1 0.7607 -2.1191 2.0774 34 1 1.4265 -2.5752 0.4909 35 1 2.4680 -2.6017 1.9341 36 1 2.2477 3.3223 2.3460 37 1 1.7480 1.9902 3.4157 38 1 1.0889 2.1022 1.7661 39 1 3.5819 1.2364 4.5216 40 1 5.6420 1.8041 5.7453 41 1 7.0712 4.6857 5.9291 42 1 8.8351 4.9154 5.8594 43 1 7.8467 5.1659 4.4007 44 1 7.5005 2.9541 2.0830 45 1 5.4430 2.3793 0.8583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610650363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -78.446229 kcal Electronic energy + Delta-G solvation = -27726.061886 eV Core-core repulsion = 23836.210536 eV Total energy + Delta-G solvation = -3889.851349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11459 -38.58242 -37.21524 -36.05761 -35.66002 -34.05586 -32.73687 -30.98724 -30.03546 -29.53982 -29.23975 -26.63746 -25.38772 -24.40041 -22.79332 -22.01571 -21.18351 -19.12892 -18.28924 -17.75784 -16.86847 -16.66126 -16.35122 -15.94225 -15.63517 -14.92772 -14.82615 -14.49296 -14.42989 -14.31264 -13.65310 -13.49616 -13.46960 -13.31805 -13.13635 -12.78525 -12.58642 -12.42004 -12.20132 -12.09148 -11.92646 -11.75832 -11.58412 -11.42513 -11.35487 -11.24522 -11.11419 -11.00749 -10.89527 -10.77188 -10.57489 -10.34695 -10.21913 -9.43294 -9.22360 -8.95096 -8.84427 -8.61528 -7.72832 -6.26654 -4.35206 -0.08758 0.86910 1.42523 2.74652 3.15707 3.22003 3.25485 3.30687 3.43924 3.80792 3.95919 3.97121 4.26098 4.48866 4.63104 4.72911 4.85705 4.95077 5.04678 5.18197 5.33017 5.34852 5.45350 5.49589 5.54433 5.80947 5.85860 5.97424 6.08391 6.11414 6.15797 6.16285 6.20190 6.31915 6.42650 6.51812 6.64676 6.68344 6.82187 6.92736 7.11343 7.30227 7.57925 7.77151 8.02197 8.34098 8.66867 8.89965 9.33736 10.77831 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.002879 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.477036 B = 9721.904197 C =10370.175508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.250 3.750 3 H 0.056 0.944 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.588 5.588 13 C 0.094 3.906 14 C 0.516 3.484 15 O -0.567 6.567 16 C -0.085 4.085 17 H 0.116 0.884 18 C -0.135 4.135 19 C -0.004 4.004 20 C -0.100 4.100 21 C -0.032 4.032 22 C -0.666 4.666 23 S 2.503 3.497 24 C -0.651 4.651 25 O -0.941 6.941 26 O -0.941 6.941 27 C -0.030 4.030 28 C -0.133 4.133 29 H 0.013 0.987 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.139 0.861 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 9.575 11.875 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.150 3.850 3 H 0.074 0.926 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.317 5.317 13 C -0.049 4.049 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.106 4.106 17 H 0.134 0.866 18 C -0.193 4.193 19 C -0.004 4.004 20 C -0.119 4.119 21 C -0.051 4.051 22 C -0.753 4.753 23 S 2.683 3.317 24 C -0.800 4.800 25 O -0.938 6.938 26 O -0.938 6.938 27 C -0.049 4.049 28 C -0.151 4.151 29 H 0.032 0.968 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.194 8.825 12.373 16.815 hybrid contribution -0.614 -0.094 -1.393 1.526 sum 6.580 8.731 10.980 15.495 Atomic orbital electron populations 1.22127 0.97848 1.00063 1.00844 1.19152 0.91619 0.93421 0.80815 0.92650 1.21398 1.32028 1.13478 0.90108 0.91915 1.24877 0.94669 0.94927 0.99042 1.69853 1.36107 1.22618 1.23990 0.86438 0.78731 0.79782 0.82531 1.19687 1.20824 1.20792 1.48218 1.47544 1.12433 1.23528 1.21408 0.99078 0.82976 1.01441 1.20125 0.78693 0.88302 0.82580 1.90615 1.53873 1.68632 1.31694 1.20480 0.93693 0.94074 1.02380 0.86636 1.21728 0.97058 0.98944 1.01536 1.19909 0.94161 0.92458 0.93920 1.21165 0.98591 0.98161 0.93968 1.20863 0.91236 0.93000 0.99971 1.30301 1.19869 1.18975 1.06197 1.04981 0.74567 0.77400 0.74716 1.30236 1.11935 1.25215 1.12663 1.93577 1.86410 1.64096 1.49732 1.93577 1.54026 1.85365 1.60870 1.20816 0.97614 0.94502 0.91943 1.21261 0.92722 1.00582 1.00577 0.96802 0.88672 0.94772 0.92548 0.94159 0.90382 0.92292 0.91593 0.92283 0.90621 0.84809 0.84478 0.85030 0.85310 0.85008 0.84339 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.95 37.16 0.33 -2.86 16 2 C 0.25 5.51 2.12 -69.08 -0.15 5.36 16 3 H 0.06 1.24 4.90 -51.93 -0.25 0.99 16 4 C -0.53 -13.12 7.98 -34.44 -0.27 -13.40 16 5 H 0.06 1.60 7.47 -52.49 -0.39 1.21 16 6 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.50 11.32 55.43 0.63 -21.87 16 8 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 9 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 12 N -0.59 -12.06 2.75 -175.26 -0.48 -12.54 16 13 C 0.09 1.78 9.34 59.84 0.56 2.34 16 14 C 0.52 10.26 6.79 -10.98 -0.07 10.19 16 15 O -0.57 -12.31 14.22 5.56 0.08 -12.23 16 16 C -0.09 -1.42 2.04 -92.92 -0.19 -1.61 16 17 H 0.12 2.02 6.12 -51.93 -0.32 1.70 16 18 C -0.14 -1.90 8.74 37.16 0.32 -1.58 16 19 C 0.00 -0.06 4.60 -104.63 -0.48 -0.54 16 20 C -0.10 -1.49 7.93 -39.58 -0.31 -1.80 16 21 C -0.03 -0.41 9.47 -39.59 -0.37 -0.79 16 22 C -0.67 -8.07 5.66 -39.58 -0.22 -8.30 16 23 S 2.50 24.65 5.80 -107.50 -0.62 24.03 16 24 C -0.65 -3.30 10.80 101.05 1.09 -2.20 16 25 O -0.94 -12.31 17.13 -57.54 -0.99 -13.29 16 26 O -0.94 -12.24 17.13 -57.54 -0.99 -13.23 16 27 C -0.03 -0.38 9.47 -39.58 -0.37 -0.75 16 28 C -0.13 -1.87 9.67 -39.58 -0.38 -2.26 16 29 H 0.01 0.25 7.85 -51.93 -0.41 -0.16 16 30 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 31 H 0.03 0.71 7.65 -51.93 -0.40 0.31 16 32 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.48 7.16 -51.93 -0.37 1.11 16 35 H 0.06 1.11 7.49 -51.93 -0.39 0.72 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.79 7.61 -51.93 -0.40 0.39 16 38 H 0.07 1.14 7.09 -51.93 -0.37 0.77 16 39 H 0.13 1.99 7.08 -52.49 -0.37 1.61 16 40 H 0.14 1.50 7.57 -52.49 -0.40 1.10 16 41 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.14 1.44 7.57 -52.49 -0.40 1.04 16 45 H 0.13 1.72 7.95 -52.48 -0.42 1.31 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -32.91 376.66 -8.78 -41.69 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.44 Total: 3.63 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -0.62 Total: -16.61 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.15 Total: -34.42 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.89 Total: -38.76 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 24.65 SS G_CDS: -0.62 Total: 24.03 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.91 -8.78 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.758 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds