Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 C 1.50701 * 109.46991 * 239.99897 * 2 1 3 5 5 H 1.07992 * 120.00291 * 239.99998 * 4 2 1 6 6 C 1.37878 * 119.99754 * 60.00433 * 4 2 1 7 7 N 1.31516 * 120.00380 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47276 * 119.99626 * 8 6 4 11 11 H 1.48499 * 109.47420 * 239.99860 * 8 6 4 12 12 N 1.46500 * 109.46988 * 120.00387 * 2 1 3 13 13 C 1.46493 * 120.00047 * 58.88987 * 12 2 1 14 14 C 1.34777 * 119.99885 * 238.89483 * 12 2 1 15 15 O 1.21274 * 120.00052 * 183.67893 * 14 12 2 16 16 C 1.50703 * 120.00080 * 3.67291 * 14 12 2 17 17 H 1.09002 * 109.46951 * 321.34145 * 16 14 12 18 18 C 1.53003 * 109.47154 * 81.33765 * 16 14 12 19 19 C 1.50695 * 109.47543 * 201.34109 * 16 14 12 20 20 C 1.38238 * 119.99863 * 299.73359 * 19 16 14 21 21 C 1.38231 * 120.00113 * 179.81117 * 20 19 16 22 22 C 1.38234 * 119.99885 * 0.40862 * 21 20 19 23 23 S 1.76198 * 120.00167 * 179.79362 * 22 21 20 24 24 C 1.81404 * 104.45176 * 270.02492 * 23 22 21 25 25 O 1.42099 * 104.27702 * 26.09724 * 23 22 21 26 26 O 1.42101 * 104.27920 * 153.95195 * 23 22 21 27 27 C 1.38237 * 120.00296 * 359.81870 * 22 21 20 28 28 C 1.38230 * 120.00190 * 119.99848 * 19 16 14 29 29 H 1.09000 * 109.47206 * 300.00029 * 1 2 3 30 30 H 1.09005 * 109.46872 * 59.99735 * 1 2 3 31 31 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00352 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47222 * 266.15761 * 13 12 2 34 34 H 1.09001 * 109.47510 * 26.16112 * 13 12 2 35 35 H 1.09002 * 109.47385 * 146.15960 * 13 12 2 36 36 H 1.08997 * 109.47327 * 173.27647 * 18 16 14 37 37 H 1.09003 * 109.46621 * 53.27645 * 18 16 14 38 38 H 1.08992 * 109.47396 * 293.28171 * 18 16 14 39 39 H 1.08001 * 119.99921 * 359.97438 * 20 19 16 40 40 H 1.08001 * 120.00678 * 180.20394 * 21 20 19 41 41 H 1.09000 * 109.47216 * 59.99766 * 24 23 22 42 42 H 1.09000 * 109.47151 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47108 * 299.99946 * 24 23 22 44 44 H 1.07999 * 120.00381 * 179.97438 * 27 22 21 45 45 H 1.08007 * 120.00193 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2856 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 1.6445 -2.0859 1.4402 14 6 2.8115 -0.0424 2.0720 15 8 3.2700 -0.6329 3.0269 16 6 3.1286 1.4162 1.8648 17 1 3.2726 1.6092 0.8017 18 6 1.9700 2.2691 2.3855 19 6 4.3878 1.7680 2.6142 20 6 4.4421 1.6109 3.9865 21 6 5.5984 1.9299 4.6735 22 6 6.6976 2.4140 3.9893 23 16 8.1697 2.8257 4.8656 24 6 7.9597 4.5724 5.3079 25 8 8.1262 2.0085 6.0272 26 8 9.2042 2.6760 3.9029 27 6 6.6418 2.5755 2.6175 28 6 5.4867 2.2529 1.9301 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7082 1.1610 -3.4844 33 1 0.7607 -2.1191 2.0774 34 1 1.4265 -2.5752 0.4909 35 1 2.4680 -2.6017 1.9341 36 1 2.2477 3.3223 2.3460 37 1 1.7480 1.9902 3.4157 38 1 1.0889 2.1022 1.7661 39 1 3.5819 1.2364 4.5216 40 1 5.6420 1.8041 5.7453 41 1 7.0712 4.6857 5.9291 42 1 8.8351 4.9154 5.8594 43 1 7.8467 5.1659 4.4007 44 1 7.5005 2.9541 2.0830 45 1 5.4430 2.3793 0.8583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610650363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -99.566667 kcal Electronic energy + Delta-G solvation = -27726.977737 eV Core-core repulsion = 23836.210536 eV Total energy + Delta-G solvation = -3890.767200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47887 -39.85447 -38.09948 -37.36273 -36.94139 -35.28456 -34.57871 -32.02460 -31.06622 -30.92206 -30.15513 -28.12547 -27.27040 -25.58307 -23.85027 -23.49525 -22.61853 -19.98772 -19.75248 -18.78108 -18.49245 -18.20344 -17.22851 -17.07974 -16.89148 -16.41169 -16.17849 -15.96950 -15.64232 -15.43232 -14.86992 -14.80212 -14.44024 -14.10799 -14.04921 -13.89536 -13.87375 -13.65560 -13.52898 -13.26251 -13.10744 -13.01650 -12.99514 -12.91533 -12.82968 -12.75968 -12.50475 -12.38718 -12.20279 -12.12768 -12.02745 -11.88400 -11.53877 -11.20552 -10.69744 -10.49315 -10.10227 -9.94802 -9.40802 -8.16875 -6.30788 -0.80869 -0.17410 0.36739 1.39431 1.44641 1.52768 1.69145 1.95311 2.23292 2.41049 2.59023 3.09594 3.11612 3.23536 3.52112 3.63494 3.85896 3.97998 4.13473 4.16393 4.20258 4.29408 4.40688 4.53081 4.55324 4.63814 4.67912 4.77692 4.77942 4.83694 4.92941 4.97030 5.00963 5.03244 5.06112 5.10359 5.12240 5.22286 5.39823 5.55195 5.56962 5.71689 5.88561 5.96911 6.19605 6.62446 6.81621 7.26385 7.42648 8.86044 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016909 B = 0.002879 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.477036 B = 9721.904197 C =10370.175508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.257 3.743 3 H 0.051 0.949 4 C -0.546 4.546 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.279 1.279 12 N -0.595 5.595 13 C 0.094 3.906 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.078 4.078 17 H 0.103 0.897 18 C -0.128 4.128 19 C -0.026 4.026 20 C -0.113 4.113 21 C -0.038 4.038 22 C -0.665 4.665 23 S 2.510 3.490 24 C -0.619 4.619 25 O -0.979 6.979 26 O -0.978 6.978 27 C -0.033 4.033 28 C -0.145 4.145 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 11.489 12.691 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.156 3.844 3 H 0.069 0.931 4 C -0.584 4.584 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.542 5.542 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.325 5.325 13 C -0.049 4.049 14 C 0.299 3.701 15 O -0.471 6.471 16 C -0.099 4.099 17 H 0.121 0.879 18 C -0.185 4.185 19 C -0.026 4.026 20 C -0.132 4.132 21 C -0.056 4.056 22 C -0.750 4.750 23 S 2.693 3.307 24 C -0.774 4.774 25 O -0.976 6.976 26 O -0.975 6.975 27 C -0.052 4.052 28 C -0.163 4.163 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.145 0.855 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.938 10.684 13.163 18.719 hybrid contribution -0.782 -0.629 -1.570 1.863 sum 7.156 10.054 11.594 16.933 Atomic orbital electron populations 1.21961 0.97163 0.99916 1.00755 1.18963 0.91990 0.92966 0.80469 0.93097 1.21569 1.32075 1.13264 0.91519 0.93409 1.25419 0.94893 0.95520 1.01009 1.69926 1.36533 1.23225 1.24528 0.85647 0.78205 0.78662 0.79948 1.20251 1.20403 1.20474 1.48276 1.47877 1.12990 1.23318 1.21442 0.99611 0.82358 1.01454 1.20709 0.77876 0.89603 0.81958 1.90592 1.54489 1.69501 1.32503 1.20411 0.95446 0.92147 1.01932 0.87922 1.21701 0.95587 0.99862 1.01383 1.19893 0.94168 0.94250 0.94309 1.21197 0.99275 0.98872 0.93848 1.21108 0.90906 0.92621 1.00976 1.30723 1.20316 1.17663 1.06296 1.04794 0.72958 0.79696 0.73245 1.29999 1.14371 1.18492 1.14492 1.93529 1.86409 1.67455 1.50231 1.93530 1.54839 1.87202 1.61949 1.21110 0.97667 0.94027 0.92384 1.21433 0.92994 1.00855 1.01066 0.94888 0.90617 0.94882 0.92366 0.92447 0.90849 0.92682 0.89272 0.91693 0.91685 0.85476 0.82703 0.82763 0.82622 0.82717 0.82240 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 8.95 71.98 0.64 -5.26 16 2 C 0.26 11.42 2.12 44.25 0.09 11.52 16 3 H 0.05 2.32 4.90 -2.39 -0.01 2.31 16 4 C -0.55 -27.25 7.98 25.60 0.20 -27.04 16 5 H 0.05 2.48 7.47 -2.91 -0.02 2.46 16 6 C 0.03 1.63 5.30 84.65 0.45 2.08 16 7 N -0.90 -45.79 11.32 21.45 0.24 -45.54 16 8 Si 0.95 40.57 29.54 68.60 2.03 42.59 16 9 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 12 N -0.60 -24.70 2.75 -826.80 -2.28 -26.98 16 13 C 0.09 3.59 9.34 127.77 1.19 4.78 16 14 C 0.51 20.58 6.79 87.66 0.60 21.17 16 15 O -0.59 -25.96 14.22 -3.01 -0.04 -26.01 16 16 C -0.08 -2.63 2.04 -12.29 -0.03 -2.66 16 17 H 0.10 3.68 6.12 -2.39 -0.01 3.66 16 18 C -0.13 -3.54 8.74 71.98 0.63 -2.91 16 19 C -0.03 -0.80 4.60 -19.87 -0.09 -0.89 16 20 C -0.11 -3.34 7.93 22.27 0.18 -3.17 16 21 C -0.04 -0.94 9.47 22.27 0.21 -0.73 16 22 C -0.66 -15.20 5.66 22.27 0.13 -15.07 16 23 S 2.51 44.51 5.80 -56.49 -0.33 44.18 16 24 C -0.62 -3.34 10.80 113.37 1.22 -2.12 16 25 O -0.98 -24.48 17.13 -127.65 -2.19 -26.67 16 26 O -0.98 -24.17 17.13 -127.65 -2.19 -26.35 16 27 C -0.03 -0.80 9.47 22.27 0.21 -0.59 16 28 C -0.14 -4.05 9.67 22.27 0.22 -3.84 16 29 H 0.03 1.23 7.85 -2.39 -0.02 1.21 16 30 H 0.08 3.53 6.07 -2.38 -0.01 3.52 16 31 H 0.03 1.36 7.65 -2.39 -0.02 1.34 16 32 H 0.27 12.91 8.31 -92.71 -0.77 12.13 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 2.82 7.16 -2.39 -0.02 2.80 16 35 H 0.05 2.11 7.49 -2.39 -0.02 2.09 16 36 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.70 7.61 -2.39 -0.02 1.68 16 38 H 0.06 1.92 7.09 -2.39 -0.02 1.91 16 39 H 0.13 3.82 7.08 -2.91 -0.02 3.80 16 40 H 0.16 3.21 7.57 -2.91 -0.02 3.19 16 41 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.16 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.16 3.06 7.57 -2.91 -0.02 3.03 16 45 H 0.14 3.60 7.95 -2.91 -0.02 3.58 16 Total: -1.00 -71.42 376.66 2.10 -69.31 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.00 Total: 20.19 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 5.86 Total: -24.73 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -2.03 Total: -72.52 kcal Atomic # 8 Polarization: -74.61 SS G_CDS: -4.42 Total: -79.03 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Atomic # 16 Polarization: 44.51 SS G_CDS: -0.33 Total: 44.18 kcal Total: -71.42 2.10 -69.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.252 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds