Wall clock time and date at job start Sat Apr 11 2020 05:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47040 * 2 1 4 4 C 1.50698 * 109.47429 * 120.00662 * 2 1 3 5 5 O 1.21274 * 120.00407 * 119.99896 * 4 2 1 6 6 N 1.34774 * 119.99437 * 299.99755 * 4 2 1 7 7 C 1.46502 * 120.00515 * 359.97438 * 6 4 2 8 8 C 1.46507 * 119.99702 * 180.02562 * 6 4 2 9 9 H 1.08997 * 109.46881 * 359.97438 * 8 6 4 10 10 C 1.52997 * 109.47340 * 119.99936 * 8 6 4 11 11 C 1.50704 * 109.46823 * 239.99898 * 8 6 4 12 12 H 1.08000 * 120.00449 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99852 * 179.97438 * 11 8 6 14 14 N 1.31510 * 119.99905 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 119.99959 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.47197 * 89.99917 * 15 13 11 17 17 H 1.48497 * 109.47288 * 209.99842 * 15 13 11 18 18 H 1.48497 * 109.47395 * 330.00115 * 15 13 11 19 19 C 1.50706 * 109.46902 * 240.00523 * 2 1 3 20 20 C 1.38228 * 120.00056 * 119.99638 * 19 2 1 21 21 C 1.38241 * 119.99915 * 179.97438 * 20 19 2 22 22 C 1.38228 * 119.99681 * 0.02562 * 21 20 19 23 23 S 1.76203 * 119.99649 * 179.97438 * 22 21 20 24 24 C 1.81404 * 104.44838 * 90.00553 * 23 22 21 25 25 O 1.42100 * 104.28012 * 333.93528 * 23 22 21 26 26 O 1.42100 * 104.27885 * 206.07639 * 23 22 21 27 27 C 1.38234 * 120.00757 * 0.25984 * 22 21 20 28 28 C 1.38234 * 119.99689 * 300.02245 * 19 2 1 29 29 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46673 * 299.99419 * 1 2 3 31 31 H 1.08999 * 109.47654 * 59.99416 * 1 2 3 32 32 H 1.09000 * 109.46812 * 89.99921 * 7 6 4 33 33 H 1.08999 * 109.47174 * 210.00448 * 7 6 4 34 34 H 1.09002 * 109.46834 * 330.00101 * 7 6 4 35 35 H 1.09000 * 109.46806 * 300.00297 * 10 8 6 36 36 H 1.09003 * 109.47016 * 59.99699 * 10 8 6 37 37 H 1.09001 * 109.47263 * 179.97438 * 10 8 6 38 38 H 0.97001 * 120.00359 * 180.02562 * 14 13 11 39 39 H 1.08004 * 120.00119 * 0.02562 * 20 19 2 40 40 H 1.07998 * 119.99727 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47124 * 299.99881 * 24 23 22 42 42 H 1.09001 * 109.46975 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47147 * 59.99966 * 24 23 22 44 44 H 1.08001 * 120.00506 * 179.72371 * 27 22 21 45 45 H 1.08001 * 120.00591 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4544 7 6 0.8651 0.9414 2.5890 8 6 2.1957 -0.9405 3.6506 9 1 2.8011 -1.7969 3.3538 10 6 3.0455 0.0215 4.4832 11 6 1.0239 -1.4145 4.4711 12 1 0.0158 -1.2205 4.1355 13 6 1.2387 -2.0958 5.6504 14 7 2.4661 -2.3325 6.0589 15 14 -0.2138 -2.6827 6.6678 16 1 -0.5994 -4.0506 6.2371 17 1 0.1640 -2.7040 8.1038 18 1 -1.3608 -1.7602 6.4714 19 6 2.0323 -0.7103 -1.2306 20 6 2.8269 -0.0385 -2.1405 21 6 3.2881 -0.6903 -3.2690 22 6 2.9541 -2.0136 -3.4877 23 16 3.5414 -2.8442 -4.9265 24 6 5.1266 -3.5648 -4.4178 25 8 3.7473 -1.8038 -5.8723 26 8 2.5809 -3.8654 -5.1583 27 6 2.1546 -2.6839 -2.5809 28 6 1.6979 -2.0336 -1.4496 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.1830 0.6438 2.6222 33 1 1.1230 1.4665 3.5087 34 1 1.0289 1.6002 1.7362 35 1 3.8930 0.3644 3.8897 36 1 2.4397 0.8777 4.7799 37 1 3.4088 -0.4920 5.3734 38 1 2.6173 -2.8121 6.8884 39 1 3.0882 0.9954 -1.9693 40 1 3.9093 -0.1654 -3.9797 41 1 5.8025 -2.7699 -4.1024 42 1 5.5666 -4.1037 -5.2569 43 1 4.9633 -4.2533 -3.5887 44 1 1.8901 -3.7165 -2.7541 45 1 1.0771 -2.5586 -0.7387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610650364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:45 Heat of formation + Delta-G solvation = -71.815267 kcal Electronic energy + Delta-G solvation = -27536.628039 eV Core-core repulsion = 23647.064230 eV Total energy + Delta-G solvation = -3889.563809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19519 -38.63609 -37.26275 -36.11155 -35.46198 -34.36260 -32.76819 -31.09577 -30.27338 -29.70121 -28.79074 -26.45611 -25.31134 -24.67915 -22.91379 -22.64098 -20.53561 -19.18727 -18.46750 -17.89310 -16.86750 -16.43516 -16.35362 -16.01584 -15.69610 -15.26000 -14.85705 -14.64214 -14.48645 -14.18916 -13.69336 -13.57822 -13.45282 -13.38061 -13.18134 -12.79374 -12.63581 -12.56734 -12.25434 -12.14749 -12.04695 -11.84915 -11.61514 -11.57812 -11.31698 -11.19528 -11.08512 -11.04029 -10.82023 -10.77719 -10.63542 -10.29476 -10.21155 -9.29328 -9.21822 -9.00853 -8.88216 -8.48055 -7.67617 -6.13023 -4.21304 -0.11598 0.78997 1.32894 2.70059 3.22732 3.23945 3.29927 3.31090 3.34483 3.75978 3.94139 3.94537 4.34254 4.50905 4.53931 4.59592 4.75669 4.84698 5.02301 5.16163 5.17613 5.20968 5.32782 5.38803 5.43363 5.57875 5.70604 5.73292 5.78234 5.93584 5.95619 6.04092 6.07522 6.15495 6.29709 6.52051 6.69272 6.74682 6.82594 6.98471 7.34508 7.44602 7.65149 7.94542 8.12754 8.44006 8.76169 8.95311 9.45539 10.92275 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.002605 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.165685 B =10746.347395 C =11154.643951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.102 0.898 4 C 0.509 3.491 5 O -0.545 6.545 6 N -0.589 5.589 7 C 0.083 3.917 8 C 0.258 3.742 9 H 0.063 0.937 10 C -0.148 4.148 11 C -0.526 4.526 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.888 5.888 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.001 3.999 20 C -0.136 4.136 21 C -0.028 4.028 22 C -0.665 4.665 23 S 2.504 3.496 24 C -0.650 4.650 25 O -0.943 6.943 26 O -0.941 6.941 27 C -0.026 4.026 28 C -0.102 4.102 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.011 0.989 36 H 0.030 0.970 37 H 0.094 0.906 38 H 0.264 0.736 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.140 0.860 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 4.699 -17.349 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.120 0.880 4 C 0.295 3.705 5 O -0.423 6.423 6 N -0.320 5.320 7 C -0.061 4.061 8 C 0.159 3.841 9 H 0.081 0.919 10 C -0.206 4.206 11 C -0.565 4.565 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.000 4.000 20 C -0.155 4.155 21 C -0.047 4.047 22 C -0.753 4.753 23 S 2.684 3.316 24 C -0.800 4.800 25 O -0.941 6.941 26 O -0.938 6.938 27 C -0.045 4.045 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.049 0.951 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.857 4.046 -17.999 18.541 hybrid contribution -0.457 -0.092 1.681 1.744 sum 1.400 3.954 -16.318 16.848 Atomic orbital electron populations 1.22051 0.91852 1.03616 1.03474 1.20489 0.98145 1.00260 0.91639 0.88006 1.20077 0.81196 0.84960 0.84279 1.90670 1.38906 1.26542 1.86227 1.48198 1.49059 1.28011 1.06739 1.21734 0.94924 0.87682 1.01729 1.18950 0.94238 0.91354 0.79603 0.91906 1.22103 0.97274 0.99005 1.02229 1.21302 0.92591 1.36578 1.05996 0.92282 1.24894 0.95923 0.95586 0.97377 1.69873 1.19276 1.40620 1.22811 0.86494 0.82385 0.79227 0.79271 1.20591 1.21113 1.19915 1.19778 0.92897 0.94001 0.93284 1.21123 0.99168 1.00454 0.94778 1.20791 0.95777 0.92182 0.95984 1.30321 1.15831 1.06886 1.22263 1.04950 0.76971 0.74984 0.74690 1.30222 1.22416 1.14158 1.13209 1.93567 1.86568 1.55678 1.58255 1.93578 1.57189 1.59053 1.84020 1.20884 0.92362 0.99607 0.91603 1.21123 1.00149 0.94167 0.96632 0.91729 0.89967 0.91779 0.92815 0.90864 0.92746 0.97017 0.95063 0.88762 0.92649 0.85221 0.84360 0.84963 0.85231 0.84788 0.84270 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.64 37.16 0.32 -1.50 16 2 C -0.08 -1.17 2.10 -92.92 -0.19 -1.36 16 3 H 0.10 1.18 7.13 -51.93 -0.37 0.81 16 4 C 0.51 9.79 6.95 -10.99 -0.08 9.72 16 5 O -0.55 -12.61 14.44 5.56 0.08 -12.53 16 6 N -0.59 -11.77 2.75 -175.26 -0.48 -12.25 16 7 C 0.08 1.28 8.04 59.85 0.48 1.76 16 8 C 0.26 6.35 2.63 -69.08 -0.18 6.17 16 9 H 0.06 1.81 6.90 -51.93 -0.36 1.45 16 10 C -0.15 -3.41 8.95 37.16 0.33 -3.08 16 11 C -0.53 -13.76 8.37 -34.44 -0.29 -14.05 16 12 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 15 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.00 0.01 4.40 -104.62 -0.46 -0.45 16 20 C -0.14 -1.64 9.67 -39.58 -0.38 -2.03 16 21 C -0.03 -0.32 9.47 -39.58 -0.37 -0.70 16 22 C -0.67 -7.68 5.66 -39.59 -0.22 -7.90 16 23 S 2.50 23.78 5.80 -107.50 -0.62 23.16 16 24 C -0.65 -3.82 10.80 101.05 1.09 -2.73 16 25 O -0.94 -11.36 17.13 -57.54 -0.99 -12.35 16 26 O -0.94 -11.86 17.12 -57.54 -0.98 -12.84 16 27 C -0.03 -0.33 9.47 -39.58 -0.37 -0.70 16 28 C -0.10 -1.48 7.93 -39.58 -0.31 -1.80 16 29 H 0.06 0.83 7.39 -51.93 -0.38 0.45 16 30 H 0.08 0.94 4.53 -51.92 -0.24 0.70 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 33 H 0.07 1.16 6.42 -51.93 -0.33 0.82 16 34 H 0.05 0.64 6.01 -51.93 -0.31 0.33 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 37 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.13 1.23 7.95 -52.48 -0.42 0.81 16 40 H 0.14 1.23 7.57 -52.49 -0.40 0.83 16 41 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.14 1.55 7.56 -52.49 -0.40 1.15 16 45 H 0.13 2.00 7.52 -52.49 -0.39 1.60 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -35.60 373.14 -8.78 -44.38 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.27 Total: 2.25 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -0.74 Total: -17.03 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.15 Total: -36.23 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.89 Total: -37.72 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 23.78 SS G_CDS: -0.62 Total: 23.16 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.60 -8.78 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.433 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds