Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47040 * 2 1 4 4 C 1.50698 * 109.47429 * 120.00662 * 2 1 3 5 5 O 1.21274 * 120.00407 * 119.99896 * 4 2 1 6 6 N 1.34774 * 119.99437 * 299.99755 * 4 2 1 7 7 C 1.46502 * 120.00515 * 359.97438 * 6 4 2 8 8 C 1.46507 * 119.99702 * 180.02562 * 6 4 2 9 9 H 1.08997 * 109.46881 * 359.97438 * 8 6 4 10 10 C 1.52997 * 109.47340 * 119.99936 * 8 6 4 11 11 C 1.50704 * 109.46823 * 239.99898 * 8 6 4 12 12 H 1.08000 * 120.00449 * 359.97438 * 11 8 6 13 13 C 1.37880 * 119.99852 * 179.97438 * 11 8 6 14 14 N 1.31510 * 119.99905 * 359.97438 * 13 11 8 15 15 Si 1.86792 * 119.99959 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.47197 * 89.99917 * 15 13 11 17 17 H 1.48497 * 109.47288 * 209.99842 * 15 13 11 18 18 H 1.48497 * 109.47395 * 330.00115 * 15 13 11 19 19 C 1.50706 * 109.46902 * 240.00523 * 2 1 3 20 20 C 1.38228 * 120.00056 * 119.99638 * 19 2 1 21 21 C 1.38241 * 119.99915 * 179.97438 * 20 19 2 22 22 C 1.38228 * 119.99681 * 0.02562 * 21 20 19 23 23 S 1.76203 * 119.99649 * 179.97438 * 22 21 20 24 24 C 1.81404 * 104.44838 * 90.00553 * 23 22 21 25 25 O 1.42100 * 104.28012 * 333.93528 * 23 22 21 26 26 O 1.42100 * 104.27885 * 206.07639 * 23 22 21 27 27 C 1.38234 * 120.00757 * 0.25984 * 22 21 20 28 28 C 1.38234 * 119.99689 * 300.02245 * 19 2 1 29 29 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46673 * 299.99419 * 1 2 3 31 31 H 1.08999 * 109.47654 * 59.99416 * 1 2 3 32 32 H 1.09000 * 109.46812 * 89.99921 * 7 6 4 33 33 H 1.08999 * 109.47174 * 210.00448 * 7 6 4 34 34 H 1.09002 * 109.46834 * 330.00101 * 7 6 4 35 35 H 1.09000 * 109.46806 * 300.00297 * 10 8 6 36 36 H 1.09003 * 109.47016 * 59.99699 * 10 8 6 37 37 H 1.09001 * 109.47263 * 179.97438 * 10 8 6 38 38 H 0.97001 * 120.00359 * 180.02562 * 14 13 11 39 39 H 1.08004 * 120.00119 * 0.02562 * 20 19 2 40 40 H 1.07998 * 119.99727 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.47124 * 299.99881 * 24 23 22 42 42 H 1.09001 * 109.46975 * 180.02562 * 24 23 22 43 43 H 1.09004 * 109.47147 * 59.99966 * 24 23 22 44 44 H 1.08001 * 120.00506 * 179.72371 * 27 22 21 45 45 H 1.08001 * 120.00591 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4544 7 6 0.8651 0.9414 2.5890 8 6 2.1957 -0.9405 3.6506 9 1 2.8011 -1.7969 3.3538 10 6 3.0455 0.0215 4.4832 11 6 1.0239 -1.4145 4.4711 12 1 0.0158 -1.2205 4.1355 13 6 1.2387 -2.0958 5.6504 14 7 2.4661 -2.3325 6.0589 15 14 -0.2138 -2.6827 6.6678 16 1 -0.5994 -4.0506 6.2371 17 1 0.1640 -2.7040 8.1038 18 1 -1.3608 -1.7602 6.4714 19 6 2.0323 -0.7103 -1.2306 20 6 2.8269 -0.0385 -2.1405 21 6 3.2881 -0.6903 -3.2690 22 6 2.9541 -2.0136 -3.4877 23 16 3.5414 -2.8442 -4.9265 24 6 5.1266 -3.5648 -4.4178 25 8 3.7473 -1.8038 -5.8723 26 8 2.5809 -3.8654 -5.1583 27 6 2.1546 -2.6839 -2.5809 28 6 1.6979 -2.0336 -1.4496 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.1830 0.6438 2.6222 33 1 1.1230 1.4665 3.5087 34 1 1.0289 1.6002 1.7362 35 1 3.8930 0.3644 3.8897 36 1 2.4397 0.8777 4.7799 37 1 3.4088 -0.4920 5.3734 38 1 2.6173 -2.8121 6.8884 39 1 3.0882 0.9954 -1.9693 40 1 3.9093 -0.1654 -3.9797 41 1 5.8025 -2.7699 -4.1024 42 1 5.5666 -4.1037 -5.2569 43 1 4.9633 -4.2533 -3.5887 44 1 1.8901 -3.7165 -2.7541 45 1 1.0771 -2.5586 -0.7387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610650364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -96.563859 kcal Electronic energy + Delta-G solvation = -27537.701219 eV Core-core repulsion = 23647.064230 eV Total energy + Delta-G solvation = -3890.636989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44863 -39.84909 -38.12251 -37.15755 -36.96728 -35.63035 -34.51557 -32.03998 -31.66936 -30.41688 -30.02668 -27.80042 -27.31241 -25.79762 -24.01920 -23.82406 -22.00735 -20.03291 -19.91011 -18.77103 -18.54732 -17.92386 -17.29150 -17.11728 -16.88934 -16.62564 -16.27826 -15.80334 -15.67302 -15.43398 -14.86121 -14.68821 -14.38503 -14.31091 -14.13928 -13.95225 -13.86474 -13.70955 -13.42013 -13.21774 -13.13479 -13.03300 -12.95401 -12.95022 -12.82341 -12.69248 -12.60976 -12.28272 -12.14169 -12.10899 -12.01609 -11.94086 -11.55326 -11.16715 -10.64037 -10.46336 -10.09369 -9.96002 -9.31585 -8.15558 -6.31873 -0.83919 -0.16800 0.36565 1.40125 1.41478 1.50961 1.79303 1.93233 2.23379 2.41292 2.62064 3.04739 3.12633 3.21034 3.46813 3.66065 3.85874 3.95672 4.10243 4.10967 4.17492 4.25238 4.38026 4.46638 4.53761 4.67754 4.71486 4.77146 4.82621 4.85047 4.88423 4.96779 5.00190 5.02045 5.07185 5.09582 5.15401 5.28706 5.46511 5.52162 5.63081 5.67144 5.88033 6.03440 6.16041 6.76549 6.83725 7.31513 7.48064 8.88560 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.002605 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.165685 B =10746.347395 C =11154.643951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 H 0.136 0.864 4 C 0.500 3.500 5 O -0.595 6.595 6 N -0.597 5.597 7 C 0.077 3.923 8 C 0.263 3.737 9 H 0.007 0.993 10 C -0.134 4.134 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.962 3.038 16 H -0.284 1.284 17 H -0.281 1.281 18 H -0.261 1.261 19 C -0.020 4.020 20 C -0.136 4.136 21 C -0.033 4.033 22 C -0.667 4.667 23 S 2.517 3.483 24 C -0.630 4.630 25 O -0.969 6.969 26 O -0.978 6.978 27 C -0.041 4.041 28 C -0.126 4.126 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.020 0.980 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.264 0.736 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 6.634 -18.659 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 H 0.154 0.846 4 C 0.288 3.712 5 O -0.477 6.477 6 N -0.327 5.327 7 C -0.064 4.064 8 C 0.161 3.839 9 H 0.025 0.975 10 C -0.192 4.192 11 C -0.575 4.575 12 H 0.079 0.921 13 C -0.185 4.185 14 N -0.557 5.557 15 Si 0.787 3.213 16 H -0.210 1.210 17 H -0.207 1.207 18 H -0.185 1.185 19 C -0.021 4.021 20 C -0.155 4.155 21 C -0.051 4.051 22 C -0.753 4.753 23 S 2.700 3.300 24 C -0.784 4.784 25 O -0.966 6.966 26 O -0.976 6.976 27 C -0.059 4.059 28 C -0.145 4.145 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.178 0.822 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.175 0.825 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.718 6.045 -19.316 20.313 hybrid contribution -0.335 -0.757 2.012 2.176 sum 1.383 5.288 -17.304 18.146 Atomic orbital electron populations 1.22066 0.90370 1.02959 1.05236 1.20465 0.99211 1.00923 0.88457 0.84587 1.21075 0.80163 0.84515 0.85448 1.90638 1.41098 1.28895 1.87041 1.48172 1.49671 1.29109 1.05765 1.22026 0.94419 0.86396 1.03606 1.18497 0.93462 0.90615 0.81318 0.97457 1.21885 0.97566 0.98858 1.00899 1.21587 0.93063 1.36605 1.06225 0.92094 1.25714 0.98347 0.95762 0.98635 1.70017 1.21188 1.41295 1.23189 0.85502 0.79606 0.78504 0.77692 1.20982 1.20660 1.18477 1.19907 0.94185 0.93942 0.94051 1.21487 0.97920 1.01819 0.94266 1.21216 0.95569 0.92091 0.96237 1.30656 1.15040 1.07433 1.22171 1.04551 0.77887 0.73985 0.73584 1.30070 1.18810 1.14884 1.14618 1.93528 1.87288 1.56796 1.59027 1.93530 1.59998 1.59605 1.84423 1.21014 0.93020 1.00184 0.91723 1.21120 1.01115 0.95105 0.97137 0.93718 0.89124 0.88921 0.92091 0.91244 0.88286 0.96087 0.93215 0.91546 0.92703 0.82176 0.81685 0.82921 0.82536 0.83828 0.83712 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.64 71.98 0.62 -2.66 16 2 C -0.07 -1.82 2.10 -12.28 -0.03 -1.85 16 3 H 0.14 2.60 7.13 -2.39 -0.02 2.58 16 4 C 0.50 19.40 6.95 87.66 0.61 20.01 16 5 O -0.60 -28.93 14.44 -3.01 -0.04 -28.97 16 6 N -0.60 -23.82 2.75 -826.79 -2.28 -26.09 16 7 C 0.08 2.21 8.04 127.77 1.03 3.24 16 8 C 0.26 13.34 2.63 44.24 0.12 13.45 16 9 H 0.01 0.46 6.90 -2.39 -0.02 0.44 16 10 C -0.13 -6.27 8.95 71.98 0.64 -5.63 16 11 C -0.54 -28.55 8.37 25.60 0.21 -28.33 16 12 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 13 C 0.01 0.81 5.30 84.66 0.45 1.26 16 14 N -0.92 -52.43 11.32 21.45 0.24 -52.19 16 15 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 19 C -0.02 -0.55 4.40 -19.87 -0.09 -0.64 16 20 C -0.14 -2.97 9.67 22.27 0.22 -2.75 16 21 C -0.03 -0.67 9.47 22.27 0.21 -0.46 16 22 C -0.67 -14.81 5.66 22.27 0.13 -14.68 16 23 S 2.52 44.60 5.80 -56.49 -0.33 44.27 16 24 C -0.63 -5.47 10.80 113.37 1.22 -4.25 16 25 O -0.97 -21.84 17.13 -127.65 -2.19 -24.02 16 26 O -0.98 -24.49 17.12 -127.65 -2.19 -26.67 16 27 C -0.04 -1.08 9.47 22.27 0.21 -0.86 16 28 C -0.13 -3.82 7.93 22.27 0.18 -3.64 16 29 H 0.04 1.15 7.39 -2.38 -0.02 1.14 16 30 H 0.09 1.82 4.53 -2.38 -0.01 1.81 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.66 6.95 -2.39 -0.02 1.64 16 33 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 34 H 0.10 1.92 6.01 -2.39 -0.01 1.91 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 2.09 6.66 -2.39 -0.02 2.08 16 37 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 38 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.16 2.39 7.95 -2.91 -0.02 2.37 16 40 H 0.17 2.42 7.57 -2.91 -0.02 2.40 16 41 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.15 3.44 7.56 -2.91 -0.02 3.42 16 45 H 0.11 3.67 7.52 -2.91 -0.02 3.65 16 Total: -1.00 -81.91 373.14 1.99 -79.93 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.00 Total: 16.99 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 5.73 Total: -27.80 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -2.03 Total: -78.28 kcal Atomic # 8 Polarization: -75.25 SS G_CDS: -4.41 Total: -79.67 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 44.60 SS G_CDS: -0.33 Total: 44.27 kcal Total: -81.91 1.99 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.638 kcal (2) G-P(sol) polarization free energy of solvation -81.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds