Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.50697 * 109.47112 * 239.99910 * 2 1 3 5 5 H 1.08007 * 120.00067 * 240.00491 * 4 2 1 6 6 C 1.37880 * 120.00053 * 60.00426 * 4 2 1 7 7 N 1.31506 * 120.00017 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99829 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47293 * 119.99783 * 8 6 4 11 11 H 1.48499 * 109.47064 * 239.99899 * 8 6 4 12 12 N 1.46496 * 109.46804 * 119.99807 * 2 1 3 13 13 C 1.46505 * 119.99896 * 60.00105 * 12 2 1 14 14 C 1.34777 * 120.00271 * 239.99641 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 18 18 C 1.53002 * 109.46966 * 300.00385 * 16 14 12 19 19 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 20 20 C 1.38236 * 119.99963 * 59.72976 * 19 16 14 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 16 22 22 C 1.38228 * 119.99933 * 0.41206 * 21 20 19 23 23 S 1.76198 * 120.00269 * 179.79061 * 22 21 20 24 24 C 1.81400 * 104.45085 * 270.03000 * 23 22 21 25 25 O 1.42108 * 104.27502 * 26.09689 * 23 22 21 26 26 O 1.42092 * 104.27994 * 153.95471 * 23 22 21 27 27 C 1.38238 * 119.99860 * 359.82191 * 22 21 20 28 28 C 1.38229 * 120.00216 * 240.00219 * 19 16 14 29 29 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47436 * 300.00649 * 1 2 3 31 31 H 1.09004 * 109.47058 * 59.99671 * 1 2 3 32 32 H 0.96998 * 120.00111 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 34 34 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 35 35 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 36 36 H 1.09002 * 109.47075 * 299.99352 * 18 16 14 37 37 H 1.08996 * 109.47407 * 60.00310 * 18 16 14 38 38 H 1.09000 * 109.46986 * 180.02562 * 18 16 14 39 39 H 1.08010 * 119.99941 * 359.97438 * 20 19 16 40 40 H 1.08004 * 120.00063 * 180.20763 * 21 20 19 41 41 H 1.08997 * 109.47375 * 59.99885 * 24 23 22 42 42 H 1.08997 * 109.47171 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46757 * 299.99434 * 24 23 22 44 44 H 1.08003 * 119.99697 * 179.97438 * 27 22 21 45 45 H 1.08002 * 120.00084 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2958 -0.7462 3.3136 17 1 3.9016 -1.6024 3.0166 18 6 2.1061 -1.2275 4.1465 19 6 4.1325 0.2012 4.1343 20 6 3.5768 1.3694 4.6214 21 6 4.3431 2.2366 5.3775 22 6 5.6675 1.9397 5.6392 23 16 6.6460 3.0476 6.5983 24 6 7.3753 4.1773 5.3808 25 8 5.7036 3.7325 7.4122 26 8 7.6479 2.2212 7.1747 27 6 6.2246 0.7737 5.1480 28 6 5.4572 -0.0952 4.3952 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7089 1.1613 -3.4844 33 1 0.7374 -2.1444 1.9994 34 1 1.5294 -2.5968 0.4708 35 1 2.4627 -2.5818 1.9864 36 1 1.5004 -0.3714 4.4435 37 1 1.5006 -1.9127 3.5532 38 1 2.4697 -1.7411 5.0365 39 1 2.5430 1.6034 4.4135 40 1 3.9080 3.1477 5.7609 41 1 6.5806 4.6961 4.8447 42 1 8.0038 4.9062 5.8923 43 1 7.9795 3.6087 4.6738 44 1 7.2595 0.5420 5.3522 45 1 5.8925 -1.0060 4.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610650366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -72.614472 kcal Electronic energy + Delta-G solvation = -27521.192542 eV Core-core repulsion = 23631.594076 eV Total energy + Delta-G solvation = -3889.598466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19977 -38.63547 -37.26446 -36.11351 -35.45654 -34.37263 -32.77190 -31.10015 -30.27126 -29.69770 -28.82208 -26.44065 -25.28715 -24.70171 -22.92006 -22.63897 -20.58719 -19.19034 -18.44399 -17.89063 -16.79293 -16.50453 -16.36267 -16.01663 -15.76917 -15.22746 -14.86055 -14.62961 -14.51498 -14.17192 -13.72027 -13.57279 -13.45249 -13.40066 -13.10356 -12.75337 -12.66724 -12.51842 -12.25700 -12.15004 -12.10778 -11.83249 -11.71121 -11.60731 -11.30056 -11.18285 -11.09440 -11.03740 -10.86608 -10.76303 -10.60081 -10.30443 -10.23689 -9.31536 -9.19991 -9.01584 -8.88217 -8.49055 -7.67787 -6.13947 -4.22210 -0.11653 0.78795 1.32698 2.69955 3.20677 3.23822 3.29571 3.32055 3.34120 3.75768 3.93271 3.94378 4.33870 4.51002 4.53634 4.59398 4.75709 4.84390 5.01628 5.14343 5.17268 5.21543 5.31724 5.39478 5.42085 5.58377 5.68103 5.72359 5.75573 5.91237 5.95423 6.02515 6.04515 6.15405 6.33299 6.51153 6.68528 6.75987 6.82059 6.99323 7.33534 7.46002 7.64793 7.94490 8.12707 8.43678 8.75455 8.95293 9.44603 10.91371 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002616 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.510040 B =10700.977041 C =11196.831187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.509 3.491 15 O -0.545 6.545 16 C -0.085 4.085 17 H 0.103 0.897 18 C -0.152 4.152 19 C 0.001 3.999 20 C -0.103 4.103 21 C -0.026 4.026 22 C -0.665 4.665 23 S 2.504 3.496 24 C -0.650 4.650 25 O -0.942 6.942 26 O -0.943 6.943 27 C -0.028 4.028 28 C -0.135 4.135 29 H 0.029 0.971 30 H 0.011 0.989 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.926 -0.666 15.702 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.064 4.064 14 C 0.295 3.705 15 O -0.423 6.423 16 C -0.106 4.106 17 H 0.121 0.879 18 C -0.209 4.209 19 C 0.001 3.999 20 C -0.121 4.121 21 C -0.045 4.045 22 C -0.753 4.753 23 S 2.684 3.316 24 C -0.800 4.800 25 O -0.939 6.939 26 O -0.941 6.941 27 C -0.047 4.047 28 C -0.154 4.154 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.072 0.056 16.308 18.197 hybrid contribution 0.074 -0.696 -1.980 2.100 sum 8.147 -0.641 14.328 16.495 Atomic orbital electron populations 1.22081 0.98143 0.99417 1.00810 1.18948 0.90877 0.94495 0.79851 0.91929 1.21348 1.31878 1.13050 0.90298 0.92203 1.24894 0.94903 0.94968 0.99003 1.69881 1.36283 1.22598 1.23720 0.86443 0.78618 0.79587 0.82749 1.19814 1.20897 1.20895 1.48195 1.48747 1.11577 1.23433 1.21775 0.98776 0.83441 1.02396 1.20078 0.79430 0.87131 0.83853 1.90671 1.58194 1.16927 1.76551 1.20492 0.97826 0.98010 0.94290 0.87865 1.22049 0.96694 1.02370 0.99830 1.19775 0.93536 0.94061 0.92550 1.21084 1.00890 0.93628 0.96547 1.20866 0.91629 0.98795 0.93214 1.30323 1.08880 1.14189 1.21909 1.04945 0.74955 0.75675 0.76008 1.30220 1.14122 1.16922 1.18747 1.93576 1.61174 1.75071 1.64075 1.93566 1.59945 1.66080 1.74459 1.20800 0.99733 0.91597 0.92535 1.21136 0.93524 1.00601 1.00146 0.95143 0.97037 0.88834 0.92689 0.93424 0.90085 0.92604 0.91894 0.90037 0.91705 0.85131 0.84305 0.84796 0.85227 0.84924 0.84335 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.26 6.35 2.64 -69.09 -0.18 6.16 16 3 H 0.06 1.80 6.90 -51.93 -0.36 1.44 16 4 C -0.53 -13.80 7.99 -34.44 -0.28 -14.07 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.16 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -11.77 2.75 -175.27 -0.48 -12.25 16 13 C 0.08 1.23 7.80 59.85 0.47 1.69 16 14 C 0.51 9.81 6.94 -10.98 -0.08 9.73 16 15 O -0.55 -12.62 14.42 5.56 0.08 -12.54 16 16 C -0.08 -1.18 2.10 -92.92 -0.20 -1.37 16 17 H 0.10 1.25 7.14 -51.93 -0.37 0.88 16 18 C -0.15 -1.72 8.64 37.16 0.32 -1.40 16 19 C 0.00 0.02 4.40 -104.63 -0.46 -0.44 16 20 C -0.10 -1.46 7.92 -39.58 -0.31 -1.78 16 21 C -0.03 -0.33 9.47 -39.59 -0.37 -0.71 16 22 C -0.67 -7.68 5.66 -39.58 -0.22 -7.91 16 23 S 2.50 23.82 5.80 -107.50 -0.62 23.19 16 24 C -0.65 -3.89 10.80 101.05 1.09 -2.80 16 25 O -0.94 -11.77 17.13 -57.54 -0.99 -12.75 16 26 O -0.94 -11.43 17.13 -57.54 -0.99 -12.41 16 27 C -0.03 -0.32 9.47 -39.58 -0.37 -0.69 16 28 C -0.14 -1.67 9.67 -39.59 -0.38 -2.05 16 29 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.05 0.64 6.95 -51.93 -0.36 0.28 16 34 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 35 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 36 H 0.06 0.74 7.40 -51.93 -0.38 0.36 16 37 H 0.08 0.87 4.53 -51.93 -0.24 0.63 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.13 1.88 7.52 -52.48 -0.39 1.48 16 40 H 0.14 1.50 7.57 -52.48 -0.40 1.10 16 41 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.14 1.27 7.57 -52.48 -0.40 0.87 16 45 H 0.13 1.30 7.95 -52.49 -0.42 0.88 16 LS Contribution 373.81 15.07 5.63 5.63 Total: -1.00 -35.63 373.81 -8.84 -44.47 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.34 Total: 2.11 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.74 Total: -17.04 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.14 Total: -36.19 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.89 Total: -37.70 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 23.82 SS G_CDS: -0.62 Total: 23.19 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.63 -8.84 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.147 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds