Wall clock time and date at job start Sat Apr 11 2020 05:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.50697 * 109.47112 * 239.99910 * 2 1 3 5 5 H 1.08007 * 120.00067 * 240.00491 * 4 2 1 6 6 C 1.37880 * 120.00053 * 60.00426 * 4 2 1 7 7 N 1.31506 * 120.00017 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99829 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47293 * 119.99783 * 8 6 4 11 11 H 1.48499 * 109.47064 * 239.99899 * 8 6 4 12 12 N 1.46496 * 109.46804 * 119.99807 * 2 1 3 13 13 C 1.46505 * 119.99896 * 60.00105 * 12 2 1 14 14 C 1.34777 * 120.00271 * 239.99641 * 12 2 1 15 15 O 1.21278 * 119.99854 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00161 * 180.02562 * 14 12 2 17 17 H 1.09002 * 109.47152 * 60.00245 * 16 14 12 18 18 C 1.53002 * 109.46966 * 300.00385 * 16 14 12 19 19 C 1.50701 * 109.47064 * 180.02562 * 16 14 12 20 20 C 1.38236 * 119.99963 * 59.72976 * 19 16 14 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 16 22 22 C 1.38228 * 119.99933 * 0.41206 * 21 20 19 23 23 S 1.76198 * 120.00269 * 179.79061 * 22 21 20 24 24 C 1.81400 * 104.45085 * 270.03000 * 23 22 21 25 25 O 1.42108 * 104.27502 * 26.09689 * 23 22 21 26 26 O 1.42092 * 104.27994 * 153.95471 * 23 22 21 27 27 C 1.38238 * 119.99860 * 359.82191 * 22 21 20 28 28 C 1.38229 * 120.00216 * 240.00219 * 19 16 14 29 29 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47436 * 300.00649 * 1 2 3 31 31 H 1.09004 * 109.47058 * 59.99671 * 1 2 3 32 32 H 0.96998 * 120.00111 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47333 * 269.99341 * 13 12 2 34 34 H 1.08997 * 109.47024 * 30.00155 * 13 12 2 35 35 H 1.09000 * 109.46875 * 149.99915 * 13 12 2 36 36 H 1.09002 * 109.47075 * 299.99352 * 18 16 14 37 37 H 1.08996 * 109.47407 * 60.00310 * 18 16 14 38 38 H 1.09000 * 109.46986 * 180.02562 * 18 16 14 39 39 H 1.08010 * 119.99941 * 359.97438 * 20 19 16 40 40 H 1.08004 * 120.00063 * 180.20763 * 21 20 19 41 41 H 1.08997 * 109.47375 * 59.99885 * 24 23 22 42 42 H 1.08997 * 109.47171 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.46757 * 299.99434 * 24 23 22 44 44 H 1.08003 * 119.99697 * 179.97438 * 27 22 21 45 45 H 1.08002 * 120.00084 * 359.97438 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1467 -0.1875 -4.8164 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0356 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2958 -0.7462 3.3136 17 1 3.9016 -1.6024 3.0166 18 6 2.1061 -1.2275 4.1465 19 6 4.1325 0.2012 4.1343 20 6 3.5768 1.3694 4.6214 21 6 4.3431 2.2366 5.3775 22 6 5.6675 1.9397 5.6392 23 16 6.6460 3.0476 6.5983 24 6 7.3753 4.1773 5.3808 25 8 5.7036 3.7325 7.4122 26 8 7.6479 2.2212 7.1747 27 6 6.2246 0.7737 5.1480 28 6 5.4572 -0.0952 4.3952 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.7089 1.1613 -3.4844 33 1 0.7374 -2.1444 1.9994 34 1 1.5294 -2.5968 0.4708 35 1 2.4627 -2.5818 1.9864 36 1 1.5004 -0.3714 4.4435 37 1 1.5006 -1.9127 3.5532 38 1 2.4697 -1.7411 5.0365 39 1 2.5430 1.6034 4.4135 40 1 3.9080 3.1477 5.7609 41 1 6.5806 4.6961 4.8447 42 1 8.0038 4.9062 5.8923 43 1 7.9795 3.6087 4.6738 44 1 7.2595 0.5420 5.3522 45 1 5.8925 -1.0060 4.0113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610650366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:50 Heat of formation + Delta-G solvation = -97.267978 kcal Electronic energy + Delta-G solvation = -27522.261598 eV Core-core repulsion = 23631.594076 eV Total energy + Delta-G solvation = -3890.667522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44934 -39.84756 -38.12492 -37.15260 -36.96981 -35.63047 -34.51014 -32.04167 -31.66512 -30.42776 -30.03888 -27.77879 -27.30935 -25.77358 -24.02731 -23.82483 -22.05709 -20.02894 -19.88626 -18.77684 -18.47426 -18.00885 -17.32163 -17.11809 -16.88535 -16.58951 -16.29227 -15.79938 -15.66212 -15.44988 -14.84658 -14.62520 -14.37382 -14.28418 -14.12932 -13.95704 -13.81723 -13.64902 -13.59375 -13.19511 -13.13735 -13.03574 -12.99637 -12.95792 -12.77604 -12.68937 -12.64625 -12.23293 -12.15669 -12.10656 -12.03106 -11.93858 -11.55056 -11.18273 -10.64057 -10.46270 -10.09458 -9.96120 -9.31307 -8.15572 -6.31990 -0.84250 -0.16869 0.36498 1.40052 1.42017 1.52833 1.79868 1.92999 2.23073 2.41231 2.62018 3.04386 3.12804 3.20773 3.46718 3.65709 3.86276 3.95415 4.10559 4.10817 4.17297 4.25438 4.37674 4.48100 4.53557 4.68310 4.73289 4.77086 4.81898 4.85775 4.90127 4.96551 5.00481 5.02670 5.06752 5.09199 5.15392 5.28270 5.48045 5.51778 5.60254 5.67103 5.87709 6.03680 6.16295 6.76766 6.83631 7.31460 7.48025 8.88873 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018582 B = 0.002616 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.510040 B =10700.977041 C =11196.831187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.007 0.993 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.263 1.263 10 H -0.276 1.276 11 H -0.287 1.287 12 N -0.597 5.597 13 C 0.075 3.925 14 C 0.500 3.500 15 O -0.595 6.595 16 C -0.071 4.071 17 H 0.130 0.870 18 C -0.148 4.148 19 C -0.020 4.020 20 C -0.124 4.124 21 C -0.040 4.040 22 C -0.668 4.668 23 S 2.518 3.482 24 C -0.631 4.631 25 O -0.977 6.977 26 O -0.970 6.970 27 C -0.033 4.033 28 C -0.139 4.139 29 H 0.047 0.953 30 H 0.018 0.982 31 H 0.065 0.935 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.676 -2.472 16.246 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.327 5.327 13 C -0.067 4.067 14 C 0.288 3.712 15 O -0.477 6.477 16 C -0.092 4.092 17 H 0.148 0.852 18 C -0.205 4.205 19 C -0.021 4.021 20 C -0.143 4.143 21 C -0.059 4.059 22 C -0.754 4.754 23 S 2.701 3.299 24 C -0.785 4.785 25 O -0.974 6.974 26 O -0.967 6.967 27 C -0.052 4.052 28 C -0.158 4.158 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.169 0.831 44 H 0.181 0.819 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.786 -1.830 16.895 19.610 hybrid contribution -0.410 -0.027 -2.119 2.158 sum 9.376 -1.857 14.776 17.598 Atomic orbital electron populations 1.21866 0.97282 1.00094 0.99802 1.18493 0.91471 0.92163 0.81749 0.97459 1.21626 1.31753 1.13035 0.91114 0.91916 1.25734 0.95099 0.95633 1.02057 1.70028 1.37393 1.23984 1.24323 0.85421 0.78189 0.78535 0.78946 1.18714 1.20134 1.21277 1.48170 1.48915 1.13354 1.22244 1.22060 1.01382 0.80647 1.02654 1.21065 0.78383 0.86795 0.84925 1.90639 1.59788 1.19384 1.77849 1.20463 0.98964 0.98000 0.91762 0.85233 1.22067 0.95670 1.02208 1.00553 1.19911 0.94543 0.94269 0.93380 1.21129 1.00656 0.94734 0.97770 1.21037 0.92344 0.99092 0.93390 1.30661 1.08621 1.14908 1.21170 1.04532 0.73931 0.75350 0.76130 1.30074 1.14703 1.16152 1.17526 1.93530 1.62496 1.75338 1.66050 1.93526 1.60015 1.67408 1.75771 1.21192 1.00889 0.91211 0.91890 1.21475 0.92757 1.01672 0.99868 0.93407 0.96247 0.91598 0.92708 0.91093 0.91417 0.88811 0.93160 0.88973 0.89065 0.86683 0.83449 0.83757 0.82529 0.83064 0.81889 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.23 8.97 71.98 0.65 -5.59 16 2 C 0.26 13.34 2.64 44.24 0.12 13.46 16 3 H 0.01 0.46 6.90 -2.39 -0.02 0.44 16 4 C -0.54 -28.43 7.99 25.60 0.20 -28.22 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 12 N -0.60 -23.80 2.75 -826.81 -2.28 -26.08 16 13 C 0.07 2.12 7.80 127.77 1.00 3.12 16 14 C 0.50 19.42 6.94 87.66 0.61 20.03 16 15 O -0.59 -28.87 14.42 -3.02 -0.04 -28.91 16 16 C -0.07 -1.86 2.10 -12.28 -0.03 -1.89 16 17 H 0.13 2.69 7.14 -2.39 -0.02 2.68 16 18 C -0.15 -3.03 8.64 71.98 0.62 -2.40 16 19 C -0.02 -0.56 4.40 -19.87 -0.09 -0.65 16 20 C -0.12 -3.64 7.92 22.27 0.18 -3.46 16 21 C -0.04 -1.03 9.47 22.27 0.21 -0.82 16 22 C -0.67 -14.86 5.66 22.27 0.13 -14.73 16 23 S 2.52 44.74 5.80 -56.49 -0.33 44.41 16 24 C -0.63 -5.65 10.80 113.37 1.22 -4.43 16 25 O -0.98 -24.10 17.13 -127.65 -2.19 -26.29 16 26 O -0.97 -22.14 17.13 -127.65 -2.19 -24.32 16 27 C -0.03 -0.71 9.47 22.27 0.21 -0.49 16 28 C -0.14 -3.17 9.67 22.27 0.22 -2.95 16 29 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.07 1.70 6.95 -2.39 -0.02 1.68 16 34 H 0.07 2.13 7.02 -2.39 -0.02 2.12 16 35 H 0.09 1.95 6.01 -2.39 -0.01 1.93 16 36 H 0.05 1.16 7.40 -2.39 -0.02 1.14 16 37 H 0.09 1.66 4.53 -2.39 -0.01 1.65 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.12 3.58 7.52 -2.91 -0.02 3.56 16 40 H 0.15 3.33 7.57 -2.91 -0.02 3.31 16 41 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.16 2.56 7.57 -2.91 -0.02 2.54 16 45 H 0.16 2.61 7.95 -2.91 -0.02 2.59 16 Total: -1.00 -81.32 373.81 1.94 -79.38 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.00 Total: 17.51 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 5.69 Total: -27.81 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.03 Total: -78.18 kcal Atomic # 8 Polarization: -75.11 SS G_CDS: -4.42 Total: -79.52 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 44.74 SS G_CDS: -0.33 Total: 44.41 kcal Total: -81.32 1.94 -79.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610650366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.888 kcal (2) G-P(sol) polarization free energy of solvation -81.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds