Wall clock time and date at job start Sat Apr 11 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99989 * 2 1 4 4 C 1.53001 * 109.47044 * 275.00220 * 3 2 1 5 5 H 1.09005 * 109.48328 * 305.02041 * 4 3 2 6 6 C 1.53091 * 109.47985 * 185.00127 * 4 3 2 7 7 C 1.53178 * 109.16405 * 182.40870 * 6 4 3 8 8 C 1.53182 * 109.03403 * 56.98315 * 7 6 4 9 9 C 1.53095 * 109.16184 * 303.01569 * 8 7 6 10 10 O 1.42903 * 109.48048 * 65.06135 * 4 3 2 11 11 S 1.65601 * 119.99976 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40349 * 336.45378 * 11 2 1 13 13 O 1.42102 * 106.40249 * 203.53716 * 11 2 1 14 14 C 1.76202 * 107.21989 * 89.99498 * 11 2 1 15 15 C 1.38650 * 119.87673 * 270.01995 * 14 11 2 16 16 C 1.38618 * 120.50395 * 180.02562 * 15 14 11 17 17 C 1.37643 * 120.24323 * 359.67398 * 16 15 14 18 18 C 1.40699 * 119.74478 * 0.58394 * 17 16 15 19 19 C 1.41392 * 120.24263 * 179.72148 * 18 17 16 20 20 H 1.08001 * 119.99891 * 204.87276 * 19 18 17 21 21 C 1.39947 * 120.00461 * 24.85974 * 19 18 17 22 22 N 1.30824 * 119.99745 * 17.44317 * 21 19 18 23 23 Si 1.86794 * 120.00213 * 197.43543 * 21 19 18 24 24 H 1.48494 * 109.47363 * 265.18569 * 23 21 19 25 25 H 1.48501 * 109.46977 * 145.18546 * 23 21 19 26 26 H 1.48501 * 109.47079 * 25.19166 * 23 21 19 27 27 C 1.37600 * 119.87523 * 90.00179 * 14 11 2 28 28 H 1.09008 * 109.46499 * 269.99492 * 1 2 3 29 29 H 1.09000 * 109.47326 * 29.99622 * 1 2 3 30 30 H 1.08999 * 109.47120 * 150.00043 * 1 2 3 31 31 H 1.08994 * 109.47144 * 35.00864 * 3 2 1 32 32 H 1.09008 * 109.46959 * 155.00375 * 3 2 1 33 33 H 1.09006 * 109.52242 * 302.31785 * 6 4 3 34 34 H 1.08997 * 109.52460 * 62.43817 * 6 4 3 35 35 H 1.09007 * 109.54145 * 176.84275 * 7 6 4 36 36 H 1.08995 * 109.54593 * 297.02624 * 7 6 4 37 37 H 1.08996 * 109.52208 * 62.92340 * 8 7 6 38 38 H 1.08998 * 109.52151 * 183.04927 * 8 7 6 39 39 H 1.08998 * 109.48126 * 177.58986 * 9 8 7 40 40 H 1.09001 * 109.47762 * 297.61880 * 9 8 7 41 41 H 1.08004 * 119.74915 * 0.02562 * 15 14 11 42 42 H 1.08000 * 119.87748 * 179.97438 * 16 15 14 43 43 H 1.07997 * 120.12546 * 180.32303 * 17 16 15 44 44 H 0.96993 * 120.00351 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.12557 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 2.8115 1.0011 -2.0477 6 6 3.2148 3.0320 -1.4501 7 6 3.3067 3.5651 -2.8831 8 6 1.8928 3.8314 -3.4088 9 6 1.0726 2.5417 -3.3201 10 8 1.0531 2.0834 -1.9667 11 16 2.2930 -1.4342 -0.0006 12 8 1.4114 -2.4068 0.5435 13 8 3.5760 -1.1570 0.5439 14 6 2.5537 -1.8852 -1.6839 15 6 1.6145 -2.6628 -2.3439 16 6 1.8067 -3.0256 -3.6679 17 6 2.9315 -2.6109 -4.3441 18 6 3.8940 -1.8261 -3.6828 19 6 5.0562 -1.3993 -4.3656 20 1 5.9526 -1.1641 -3.8110 21 6 5.0452 -1.2817 -5.7600 22 7 3.9070 -1.2285 -6.4030 23 14 6.6554 -1.2007 -6.7033 24 1 7.0213 0.2194 -6.9371 25 1 6.5002 -1.8931 -8.0079 26 1 7.7248 -1.8642 -5.9150 27 6 3.6884 -1.4641 -2.3385 28 1 -0.3632 -0.0001 1.0278 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6503 2.0042 0.5895 32 1 3.1859 1.1177 0.4343 33 1 2.7685 3.7907 -0.8071 34 1 4.2130 2.7880 -1.0865 35 1 3.8793 4.4927 -2.8911 36 1 3.7994 2.8270 -3.5159 37 1 1.4198 4.6061 -2.8054 38 1 1.9459 4.1597 -4.4468 39 1 0.0529 2.7358 -3.6529 40 1 1.5236 1.7797 -3.9557 41 1 0.7264 -2.9883 -1.8226 42 1 1.0687 -3.6319 -4.1721 43 1 3.0768 -2.8904 -5.3772 44 1 3.8993 -1.1467 -7.3694 45 1 4.4188 -0.8586 -1.8223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:59 Heat of formation + Delta-G solvation = -113.146829 kcal Electronic energy + Delta-G solvation = -29220.550156 eV Core-core repulsion = 25329.194075 eV Total energy + Delta-G solvation = -3891.356080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.27302 -37.64800 -36.71184 -35.91129 -35.27863 -33.86274 -33.41281 -31.52349 -30.09030 -29.80018 -27.61989 -25.49671 -25.05753 -23.84464 -22.13082 -21.67182 -21.01062 -20.06055 -18.63928 -17.87898 -17.10079 -16.11679 -16.00376 -15.78001 -15.66806 -15.21181 -14.79879 -14.49259 -14.45826 -14.12656 -13.62351 -13.45800 -13.33844 -12.97041 -12.67794 -12.60033 -12.47390 -12.16900 -12.00144 -11.91934 -11.60391 -11.43007 -11.38066 -11.27800 -11.25585 -11.01164 -10.96480 -10.91409 -10.84254 -10.72247 -10.62728 -10.18799 -9.79032 -9.58884 -9.37243 -9.21809 -8.66422 -8.01692 -7.70977 -6.94946 -4.55871 1.01167 2.19383 2.61188 2.97505 2.99546 3.05977 3.48978 3.80165 3.95924 4.27582 4.41546 4.79001 4.91973 4.96289 5.00018 5.03944 5.21708 5.36839 5.39099 5.46858 5.60933 5.69819 5.75002 5.78680 5.86276 6.01260 6.02301 6.04083 6.08019 6.08562 6.16794 6.18216 6.26063 6.30316 6.45656 6.62270 6.72270 6.76383 6.94253 7.03456 7.20742 7.37445 7.47820 7.71803 7.78865 7.92458 8.38322 8.65078 8.70123 10.00324 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.005706 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.067653 B = 4906.318391 C = 6556.020261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.997 5.997 3 C 0.128 3.872 4 C 0.063 3.937 5 H 0.077 0.923 6 C -0.147 4.147 7 C -0.124 4.124 8 C -0.152 4.152 9 C 0.059 3.941 10 O -0.372 6.372 11 S 2.684 3.316 12 O -0.972 6.972 13 O -0.972 6.972 14 C -0.630 4.630 15 C -0.143 4.143 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.093 3.907 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.077 3.923 22 N -0.795 5.795 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.127 4.127 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.282 0.718 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 8.788 4.302 10.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.833 5.833 3 C 0.002 3.998 4 C 0.003 3.997 5 H 0.095 0.905 6 C -0.185 4.185 7 C -0.161 4.161 8 C -0.190 4.190 9 C -0.018 4.018 10 O -0.292 6.292 11 S 2.780 3.220 12 O -0.963 6.963 13 O -0.963 6.963 14 C -0.722 4.722 15 C -0.164 4.164 16 C -0.140 4.140 17 C -0.137 4.137 18 C 0.090 3.910 19 C -0.491 4.491 20 H 0.100 0.900 21 C -0.141 4.141 22 N -0.420 5.420 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.148 4.148 28 H 0.068 0.932 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.093 0.907 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.443 8.363 4.974 10.697 hybrid contribution 0.813 0.254 -1.751 1.947 sum -3.630 8.617 3.223 9.890 Atomic orbital electron populations 1.21433 0.78236 1.03787 1.01113 1.57331 1.15298 1.20738 1.89892 1.21435 0.98042 0.85409 0.94950 1.22799 0.84739 0.96328 0.95816 0.90536 1.22126 1.00732 0.98013 0.97673 1.21573 0.96745 1.01410 0.96392 1.22148 0.96567 0.98805 1.01477 1.22540 1.00355 0.94782 0.84088 1.87845 1.27994 1.85842 1.27470 1.01901 0.72652 0.72129 0.75306 1.93505 1.66374 1.58335 1.78068 1.93502 1.40167 1.84507 1.78087 1.29824 1.05021 1.14340 1.23004 1.20075 0.98251 1.02822 0.95273 1.20811 0.98107 1.00849 0.94271 1.21631 0.94518 0.97224 1.00287 1.17653 0.92874 0.89742 0.90748 1.19587 0.98185 1.39917 0.91368 0.90017 1.25897 0.97833 0.92164 0.98228 1.69775 1.27074 1.34863 1.10269 0.86301 0.82237 0.79274 0.79047 1.19459 1.19944 1.18259 1.20718 0.95508 1.02210 0.96355 0.93239 0.89934 0.91378 0.89618 0.87691 0.91309 0.90570 0.91835 0.90984 0.91639 0.91284 0.89433 0.92394 0.87713 0.88435 0.85806 0.90663 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.38 10.11 59.85 0.61 1.98 16 2 N -1.00 -15.88 3.17 -121.75 -0.39 -16.26 16 3 C 0.13 1.80 5.39 -4.04 -0.02 1.78 16 4 C 0.06 0.94 2.89 -26.68 -0.08 0.86 16 5 H 0.08 1.38 6.94 -51.93 -0.36 1.02 16 6 C -0.15 -1.85 5.42 -26.59 -0.14 -2.00 16 7 C -0.12 -1.57 6.03 -26.55 -0.16 -1.73 16 8 C -0.15 -1.83 6.14 -26.59 -0.16 -2.00 16 9 C 0.06 0.83 6.84 37.21 0.25 1.08 16 10 O -0.37 -5.62 8.78 -35.23 -0.31 -5.93 16 11 S 2.68 52.26 5.65 -107.50 -0.61 51.65 16 12 O -0.97 -20.41 16.34 -57.17 -0.93 -21.35 16 13 O -0.97 -20.38 15.82 -57.17 -0.90 -21.29 16 14 C -0.63 -13.82 5.97 -39.66 -0.24 -14.05 16 15 C -0.14 -3.13 9.53 -39.29 -0.37 -3.50 16 16 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 17 C -0.12 -2.87 8.70 -38.87 -0.34 -3.20 16 18 C 0.09 2.35 5.57 -106.83 -0.60 1.75 16 19 C -0.46 -11.50 9.05 -37.74 -0.34 -11.84 16 20 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 21 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 22 N -0.79 -19.06 10.96 55.55 0.61 -18.45 16 23 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 24 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 27 C -0.13 -2.97 8.10 -38.87 -0.32 -3.28 16 28 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 1.06 6.67 -51.93 -0.35 0.71 16 30 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 31 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 32 H 0.11 1.45 6.92 -51.92 -0.36 1.09 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.10 2.09 7.60 -52.48 -0.40 1.69 16 42 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.12 3.09 6.17 -52.49 -0.32 2.77 16 44 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 45 H 0.11 2.45 7.60 -52.48 -0.40 2.05 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -28.97 371.88 -11.14 -40.11 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.79 Total: 8.80 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: -2.39 Total: -35.55 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.22 Total: -34.71 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -2.15 Total: -48.56 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.61 Total: 51.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.97 -11.14 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.034 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds