Wall clock time and date at job start Sat Apr 11 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47302 * 2 1 4 4 O 1.42897 * 109.46962 * 240.00710 * 2 1 3 5 5 C 1.53001 * 109.47618 * 120.00364 * 2 1 3 6 6 H 1.08998 * 109.49379 * 60.06412 * 5 2 1 7 7 C 1.53038 * 109.49677 * 300.00113 * 5 2 1 8 8 C 1.53041 * 109.53949 * 178.64952 * 7 5 2 9 9 C 1.53190 * 109.31045 * 61.36028 * 8 7 5 10 10 N 1.46923 * 108.89838 * 305.29466 * 9 8 7 11 11 S 1.65598 * 120.63569 * 233.68043 * 10 9 8 12 12 O 1.42101 * 106.40495 * 203.53808 * 11 10 9 13 13 O 1.42097 * 106.40150 * 336.46158 * 11 10 9 14 14 C 1.76206 * 107.21487 * 89.99939 * 11 10 9 15 15 C 1.38656 * 119.87456 * 90.00553 * 14 11 10 16 16 C 1.38618 * 120.49825 * 179.97438 * 15 14 11 17 17 C 1.37634 * 120.24900 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74817 * 0.02562 * 17 16 15 19 19 C 1.41392 * 120.24474 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99739 * 204.38691 * 19 18 17 21 21 C 1.39937 * 120.00241 * 24.38405 * 19 18 17 22 22 N 1.30825 * 120.00156 * 17.85837 * 21 19 18 23 23 Si 1.86810 * 119.99983 * 197.85818 * 21 19 18 24 24 H 1.48496 * 109.47071 * 94.69607 * 23 21 19 25 25 H 1.48501 * 109.46942 * 214.69057 * 23 21 19 26 26 H 1.48493 * 109.47011 * 334.69466 * 23 21 19 27 27 C 1.37597 * 119.87496 * 269.72483 * 14 11 10 28 28 C 1.47215 * 118.55119 * 53.53905 * 10 9 8 29 29 H 1.09005 * 109.47011 * 299.99564 * 1 2 3 30 30 H 1.09001 * 109.47435 * 59.99151 * 1 2 3 31 31 H 1.08993 * 109.47311 * 180.02562 * 1 2 3 32 32 H 0.96706 * 114.00099 * 299.99972 * 4 2 1 33 33 H 1.08997 * 109.46007 * 58.62713 * 7 5 2 34 34 H 1.09007 * 109.44617 * 298.66358 * 7 5 2 35 35 H 1.09000 * 109.49418 * 301.41633 * 8 7 5 36 36 H 1.08995 * 109.52586 * 181.32700 * 8 7 5 37 37 H 1.09007 * 109.58960 * 65.15848 * 9 8 7 38 38 H 1.09001 * 109.58559 * 185.43875 * 9 8 7 39 39 H 1.08000 * 119.74978 * 359.97438 * 15 14 11 40 40 H 1.08001 * 119.87106 * 179.97438 * 16 15 14 41 41 H 1.08002 * 120.12598 * 180.02562 * 17 16 15 42 42 H 0.97004 * 119.99961 * 179.97438 * 22 21 19 43 43 H 1.08002 * 120.12862 * 0.02562 * 27 14 11 44 44 H 1.09004 * 109.52666 * 186.67342 * 28 10 9 45 45 H 1.08999 * 109.55808 * 66.30291 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1668 5 6 2.0401 -0.7213 1.2492 6 1 1.6779 -1.7494 1.2489 7 6 1.5303 -0.0005 2.4992 8 6 2.0121 -0.7406 3.7491 9 6 3.5437 -0.7383 3.7803 10 7 4.0462 -1.2996 2.5190 11 16 5.1199 -2.5603 2.5248 12 8 5.8114 -2.5043 1.2846 13 8 5.7775 -2.5214 3.7838 14 6 4.1768 -4.0486 2.5018 15 6 3.8235 -4.6237 1.2906 16 6 3.0823 -5.7946 1.2574 17 6 2.6891 -6.3997 2.4294 18 6 3.0419 -5.8251 3.6643 19 6 2.6441 -6.4382 4.8746 20 1 2.5527 -5.8479 5.7744 21 6 2.3686 -7.8098 4.9067 22 7 2.8003 -8.5864 3.9465 23 14 1.3844 -8.5321 6.3208 24 1 -0.0487 -8.6070 5.9390 25 1 1.8867 -9.8954 6.6279 26 1 1.5329 -7.6681 7.5193 27 6 3.7987 -4.6387 3.6858 28 6 3.5719 -0.7188 1.2521 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7209 -1.5951 -1.2331 33 1 0.4406 0.0208 2.4871 34 1 1.9133 1.0201 2.5112 35 1 1.6503 -1.7685 3.7253 36 1 1.6294 -0.2405 4.6388 37 1 3.9054 0.2835 3.8954 38 1 3.8930 -1.3457 4.6153 39 1 4.1281 -4.1558 0.3661 40 1 2.8123 -6.2336 0.3083 41 1 2.1120 -7.3122 2.4012 42 1 2.6097 -9.5372 3.9689 43 1 4.0785 -4.1913 4.6282 44 1 3.9400 -1.3155 0.4174 45 1 3.9359 0.3046 1.1609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619492361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:44 Heat of formation + Delta-G solvation = -122.611213 kcal Electronic energy + Delta-G solvation = -28649.415776 eV Core-core repulsion = 24757.649289 eV Total energy + Delta-G solvation = -3891.766487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.30977 -37.65134 -36.84928 -36.65195 -35.29430 -33.86307 -32.97787 -31.41935 -30.09639 -29.79981 -29.34785 -25.50558 -24.75229 -23.69895 -21.96946 -21.63178 -20.99801 -20.29668 -18.61737 -18.00047 -17.11086 -16.48958 -15.97233 -15.86499 -15.46461 -15.14363 -14.77706 -14.63721 -14.42281 -14.24382 -13.66684 -13.51058 -13.40667 -13.29168 -12.93016 -12.60203 -12.44950 -12.15847 -11.94904 -11.86438 -11.58668 -11.56265 -11.42870 -11.42012 -11.37338 -11.08084 -11.04491 -10.89031 -10.87970 -10.74273 -10.61160 -10.38706 -9.97185 -9.76777 -9.59171 -9.37665 -8.75729 -8.04177 -7.72355 -6.94223 -4.55745 0.97474 2.18791 2.60796 2.98155 3.02188 3.03751 3.44575 3.80812 4.21320 4.27946 4.39593 4.49108 4.70547 4.74405 4.93732 5.00289 5.04172 5.14843 5.31203 5.32557 5.40646 5.42332 5.53576 5.62979 5.74267 5.78610 5.83603 5.85670 5.92314 6.02197 6.09583 6.15683 6.16509 6.33888 6.37707 6.62773 6.68197 6.75251 6.92253 7.03272 7.20243 7.36982 7.55950 7.70724 7.78274 7.92308 8.38045 8.65047 8.69829 10.01343 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012546 B = 0.003934 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.302620 B = 7116.179043 C = 7544.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.097 0.903 4 O -0.563 6.563 5 C -0.138 4.138 6 H 0.084 0.916 7 C -0.109 4.109 8 C -0.137 4.137 9 C 0.122 3.878 10 N -1.001 6.001 11 S 2.685 3.315 12 O -0.972 6.972 13 O -0.970 6.970 14 C -0.630 4.630 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.119 4.119 18 C 0.092 3.908 19 C -0.461 4.461 20 H 0.082 0.918 21 C 0.075 3.925 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.126 4.126 28 C 0.135 3.865 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.378 0.622 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.283 0.717 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 13.478 -3.473 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.049 3.951 3 H 0.115 0.885 4 O -0.369 6.369 5 C -0.158 4.158 6 H 0.103 0.897 7 C -0.147 4.147 8 C -0.176 4.176 9 C -0.003 4.003 10 N -0.837 5.837 11 S 2.782 3.218 12 O -0.962 6.962 13 O -0.960 6.960 14 C -0.722 4.722 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.089 3.911 19 C -0.490 4.490 20 H 0.100 0.900 21 C -0.143 4.143 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.147 4.147 28 C 0.010 3.990 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.116 13.927 -3.621 15.272 hybrid contribution -1.387 -1.585 0.768 2.242 sum -6.503 12.342 -2.853 14.239 Atomic orbital electron populations 1.22548 0.96475 1.02806 1.02558 1.21886 0.92803 0.96480 0.83922 0.88481 1.86568 1.77288 1.29419 1.43631 1.22305 0.96580 1.01450 0.95456 0.89718 1.21512 1.00445 0.98917 0.93791 1.21924 0.95705 1.02078 0.97865 1.21370 0.94127 0.99534 0.85303 1.57914 1.64225 1.49996 1.11546 1.01871 0.73673 0.73257 0.72973 1.93507 1.70751 1.86980 1.44981 1.93516 1.72059 1.86977 1.43492 1.29831 1.21143 1.21023 1.00198 1.20066 1.03933 0.98540 0.94244 1.20804 0.99938 0.95909 0.97387 1.21639 1.00325 1.00366 0.91520 1.17674 0.89172 0.90771 0.93519 1.19612 1.40152 0.93192 0.96085 0.89967 1.25932 0.93752 0.97273 0.97342 1.69787 1.33773 1.06357 1.31918 0.86236 0.80188 0.78651 0.81360 1.19263 1.20139 1.18387 1.20726 1.00201 0.99474 0.94302 1.21335 0.93087 0.99542 0.85042 0.91282 0.92028 0.92120 0.77475 0.91463 0.91867 0.90686 0.90864 0.91490 0.89073 0.87701 0.88449 0.85800 0.90555 0.87233 0.88699 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 9.18 37.16 0.34 -1.14 16 2 C 0.11 1.02 3.17 -26.73 -0.08 0.93 16 3 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 4 O -0.56 -6.09 12.79 -35.23 -0.45 -6.54 16 5 C -0.14 -1.47 2.11 -90.50 -0.19 -1.66 16 6 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.11 -1.02 4.85 -26.69 -0.13 -1.15 16 8 C -0.14 -1.50 6.08 -26.61 -0.16 -1.66 16 9 C 0.12 1.56 6.37 -3.71 -0.02 1.53 16 10 N -1.00 -14.89 3.30 -113.31 -0.37 -15.27 16 11 S 2.68 51.69 5.69 -107.50 -0.61 51.07 16 12 O -0.97 -20.34 16.01 -57.17 -0.92 -21.26 16 13 O -0.97 -20.77 15.97 -57.17 -0.91 -21.68 16 14 C -0.63 -13.66 5.97 -39.66 -0.24 -13.89 16 15 C -0.15 -3.13 9.53 -39.29 -0.37 -3.51 16 16 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 17 C -0.12 -2.90 8.70 -38.87 -0.34 -3.24 16 18 C 0.09 2.34 5.58 -106.82 -0.60 1.74 16 19 C -0.46 -11.64 9.05 -37.75 -0.34 -11.98 16 20 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 21 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 22 N -0.79 -19.64 10.95 55.55 0.61 -19.03 16 23 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 C -0.13 -2.97 9.26 -38.87 -0.36 -3.33 16 28 C 0.14 1.74 5.45 -3.56 -0.02 1.72 16 29 H 0.07 0.49 6.40 -51.93 -0.33 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.38 3.18 9.05 45.56 0.41 3.59 16 33 H 0.07 0.56 6.36 -51.93 -0.33 0.23 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.26 7.12 -51.93 -0.37 0.89 16 39 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 42 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 43 H 0.11 2.49 7.60 -52.49 -0.40 2.09 16 44 H 0.09 1.34 6.88 -51.93 -0.36 0.98 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -30.58 370.79 -10.98 -41.56 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.88 Total: 9.75 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: -3.00 Total: -36.98 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.23 Total: -34.30 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -2.28 Total: -49.48 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -0.61 Total: 51.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.58 -10.98 -41.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619492361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.051 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds