Wall clock time and date at job start Sat Apr 11 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00254 * 2 1 4 4 C 1.53003 * 109.47296 * 275.29463 * 3 2 1 5 5 H 1.08996 * 110.05087 * 303.90396 * 4 3 2 6 6 C 1.54258 * 110.03062 * 65.31896 * 4 3 2 7 7 C 1.54889 * 104.19481 * 142.89575 * 6 4 3 8 8 C 1.54888 * 102.75170 * 322.05797 * 7 6 4 9 9 C 1.53869 * 110.03108 * 182.48810 * 4 3 2 10 10 H 1.09007 * 110.07525 * 121.40697 * 9 4 3 11 11 O 1.42896 * 110.03739 * 359.97438 * 9 4 3 12 12 S 1.65599 * 119.99923 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40253 * 28.08782 * 12 2 1 14 14 O 1.42102 * 106.40381 * 161.00949 * 12 2 1 15 15 C 1.76208 * 107.21892 * 274.54604 * 12 2 1 16 16 C 1.38657 * 119.87313 * 85.32269 * 15 12 2 17 17 C 1.38604 * 120.50120 * 179.97438 * 16 15 12 18 18 C 1.37641 * 120.24717 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.74612 * 0.02562 * 18 17 16 20 20 C 1.41396 * 120.24496 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99856 * 207.93085 * 20 19 18 22 22 C 1.39945 * 120.00001 * 27.93250 * 20 19 18 23 23 N 1.30825 * 119.99962 * 11.71404 * 22 20 19 24 24 Si 1.86798 * 119.99859 * 191.71879 * 22 20 19 25 25 H 1.48500 * 109.47332 * 90.00000 * 24 22 20 26 26 H 1.48499 * 109.47267 * 209.99968 * 24 22 20 27 27 H 1.48499 * 109.47377 * 329.99935 * 24 22 20 28 28 C 1.37589 * 119.87527 * 265.04551 * 15 12 2 29 29 H 1.08998 * 109.46736 * 90.00031 * 1 2 3 30 30 H 1.08996 * 109.46910 * 210.00118 * 1 2 3 31 31 H 1.08997 * 109.46911 * 330.00425 * 1 2 3 32 32 H 1.08999 * 109.47527 * 155.29293 * 3 2 1 33 33 H 1.09000 * 109.47134 * 35.29181 * 3 2 1 34 34 H 1.09002 * 110.49375 * 24.21858 * 6 4 3 35 35 H 1.09002 * 110.48867 * 261.57334 * 6 4 3 36 36 H 1.09005 * 110.75402 * 80.37470 * 7 6 4 37 37 H 1.08999 * 110.75975 * 203.74171 * 7 6 4 38 38 H 1.09000 * 110.48897 * 156.61845 * 8 7 6 39 39 H 1.08998 * 110.48256 * 279.13673 * 8 7 6 40 40 H 0.96702 * 114.00690 * 181.37892 * 11 9 4 41 41 H 1.07996 * 119.74918 * 359.95629 * 16 15 12 42 42 H 1.07995 * 119.88181 * 179.97438 * 17 16 15 43 43 H 1.08008 * 120.12695 * 180.02562 * 18 17 16 44 44 H 0.97002 * 119.99313 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12983 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3373 1.7770 -1.4364 5 1 2.8198 1.0204 -2.0552 6 6 0.9486 2.1234 -2.0117 7 6 1.2000 3.3818 -2.8791 8 6 2.2408 4.1694 -2.0452 9 6 3.1589 3.0778 -1.4575 10 1 4.0407 2.9532 -2.0863 11 8 3.5507 3.4311 -0.1295 12 16 2.2930 -1.4341 0.0006 13 8 1.4521 -2.3832 -0.6407 14 8 3.6099 -1.1374 -0.4431 15 6 2.4383 -1.9518 1.6787 16 6 1.4118 -2.6721 2.2706 17 6 1.5126 -3.0862 3.5894 18 6 2.6358 -2.7864 4.3264 19 6 3.6836 -2.0560 3.7362 20 6 4.8423 -1.7426 4.4834 21 1 5.4161 -0.8593 4.2449 22 6 5.2457 -2.5771 5.5319 23 7 4.6969 -3.7556 5.6783 24 14 6.5677 -2.0080 6.7227 25 1 5.9347 -1.2970 7.8624 26 1 7.3180 -3.1853 7.2290 27 1 7.5016 -1.0893 6.0234 28 6 3.5722 -1.6448 2.3949 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1877 1.1166 0.4295 33 1 1.6528 2.0028 0.5937 34 1 0.2477 2.3480 -1.2078 35 1 0.5754 1.3045 -2.6268 36 1 1.6117 3.1058 -3.8499 37 1 0.2830 3.9591 -2.9972 38 1 2.8106 4.8436 -2.6846 39 1 1.7484 4.7262 -1.2480 40 1 4.0543 4.2547 -0.0739 41 1 0.5270 -2.9119 1.6997 42 1 0.7070 -3.6464 4.0405 43 1 2.7125 -3.1104 5.3539 44 1 4.9768 -4.3340 6.4049 45 1 4.3722 -1.0872 1.9307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:36 Heat of formation + Delta-G solvation = -116.188883 kcal Electronic energy + Delta-G solvation = -28123.509188 eV Core-core repulsion = 24232.021194 eV Total energy + Delta-G solvation = -3891.487994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.34855 -37.60414 -36.64556 -36.05889 -35.22434 -34.74517 -33.77595 -30.16364 -30.01430 -29.72539 -27.85434 -26.44209 -25.43864 -23.60148 -21.78612 -21.10240 -20.95905 -19.83842 -18.64936 -17.88385 -17.36026 -16.88568 -16.18364 -15.80936 -15.46272 -15.12877 -14.79298 -14.66570 -14.27485 -14.06157 -13.75787 -13.47662 -13.35544 -13.29048 -12.69172 -12.54764 -12.41976 -12.01667 -11.89019 -11.61434 -11.52816 -11.45954 -11.34671 -11.33090 -11.28797 -11.17475 -10.99325 -10.84017 -10.79137 -10.69368 -10.58538 -10.55496 -9.94060 -9.71752 -9.59625 -9.35108 -8.70685 -7.98501 -7.62575 -6.83189 -4.51049 1.03926 2.24053 2.66293 3.03308 3.06970 3.09424 3.52745 3.87667 4.10324 4.31210 4.39444 4.43992 4.51515 4.78678 4.93205 5.01488 5.16005 5.22536 5.28608 5.43437 5.44090 5.46240 5.57302 5.63007 5.66125 5.81286 5.85381 5.88806 5.96172 6.00811 6.06582 6.09589 6.18411 6.33068 6.38111 6.69579 6.75917 6.81304 6.98445 7.10671 7.26301 7.41525 7.60122 7.74907 7.85990 7.98610 8.44976 8.72223 8.76343 10.12027 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.003507 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.860769 B = 7981.373397 C = 9278.167332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.004 6.004 3 C 0.147 3.853 4 C -0.107 4.107 5 H 0.084 0.916 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.158 4.158 9 C 0.107 3.893 10 H 0.060 0.940 11 O -0.559 6.559 12 S 2.685 3.315 13 O -0.975 6.975 14 O -0.968 6.968 15 C -0.635 4.635 16 C -0.144 4.144 17 C -0.124 4.124 18 C -0.112 4.112 19 C 0.091 3.909 20 C -0.461 4.461 21 H 0.082 0.918 22 C 0.072 3.928 23 N -0.803 5.803 24 Si 0.915 3.085 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.120 4.120 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.375 0.625 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.127 0.873 44 H 0.282 0.718 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 13.544 -10.169 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.840 5.840 3 C 0.021 3.979 4 C -0.128 4.128 5 H 0.103 0.897 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.195 4.195 9 C 0.047 3.953 10 H 0.078 0.922 11 O -0.364 6.364 12 S 2.782 3.218 13 O -0.965 6.965 14 O -0.958 6.958 15 C -0.727 4.727 16 C -0.165 4.165 17 C -0.143 4.143 18 C -0.132 4.132 19 C 0.087 3.913 20 C -0.491 4.491 21 H 0.100 0.900 22 C -0.145 4.145 23 N -0.429 5.429 24 Si 0.740 3.260 25 H -0.193 1.193 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.222 0.778 41 H 0.122 0.878 42 H 0.116 0.884 43 H 0.145 0.855 44 H 0.093 0.907 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.421 12.360 -10.648 17.532 hybrid contribution 0.791 0.612 1.181 1.548 sum -5.629 12.972 -9.468 17.017 Atomic orbital electron populations 1.21465 0.78989 1.02936 1.01495 1.57551 1.14825 1.21613 1.90023 1.21016 0.97489 0.84230 0.95127 1.22314 0.95731 0.95960 0.98750 0.89741 1.22506 0.96588 0.97319 0.99123 1.22435 0.98707 0.96645 0.98429 1.23136 0.98179 0.98161 1.00061 1.22441 0.95782 0.93492 0.83575 0.92174 1.86592 1.76409 1.45853 1.27543 1.01900 0.72683 0.72032 0.75224 1.93502 1.68592 1.59894 1.74515 1.93517 1.37191 1.84099 1.81004 1.29845 1.03807 1.15818 1.23203 1.20078 0.97400 1.02977 0.96020 1.20826 0.98104 1.00963 0.94456 1.21706 0.91616 0.99841 1.00035 1.17705 0.92597 0.90656 0.90332 1.19605 1.08322 1.08887 1.12292 0.90005 1.25920 0.97374 0.93846 0.97334 1.69752 1.38271 1.06743 1.28124 0.86191 0.80417 0.79219 0.80216 1.19272 1.20232 1.18475 1.20833 0.95375 1.03693 0.94246 0.92797 0.91213 0.91301 0.88976 0.90089 0.90956 0.91307 0.91447 0.91456 0.91640 0.90537 0.77789 0.87843 0.88367 0.85507 0.90689 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 8.84 59.85 0.53 1.73 16 2 N -1.00 -15.47 3.13 -121.76 -0.38 -15.86 16 3 C 0.15 2.10 3.82 -4.04 -0.02 2.08 16 4 C -0.11 -1.31 3.17 -89.51 -0.28 -1.60 16 5 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 6 C -0.12 -1.16 4.96 -25.08 -0.12 -1.29 16 7 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 8 C -0.16 -1.25 6.55 -25.07 -0.16 -1.41 16 9 C 0.11 1.09 4.24 -25.61 -0.11 0.98 16 10 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 11 O -0.56 -5.99 11.44 -35.23 -0.40 -6.39 16 12 S 2.69 53.05 5.59 -107.50 -0.60 52.45 16 13 O -0.97 -20.67 16.63 -57.17 -0.95 -21.62 16 14 O -0.97 -20.99 15.96 -57.17 -0.91 -21.90 16 15 C -0.64 -14.39 5.96 -39.66 -0.24 -14.63 16 16 C -0.14 -3.19 9.53 -39.29 -0.37 -3.57 16 17 C -0.12 -2.84 10.02 -39.66 -0.40 -3.24 16 18 C -0.11 -2.85 8.67 -38.87 -0.34 -3.18 16 19 C 0.09 2.39 5.56 -106.82 -0.59 1.80 16 20 C -0.46 -12.08 9.07 -37.74 -0.34 -12.42 16 21 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 22 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 23 N -0.80 -20.45 10.84 55.55 0.60 -19.85 16 24 Si 0.92 18.47 29.58 -169.99 -5.03 13.45 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 C -0.12 -2.98 9.27 -38.88 -0.36 -3.34 16 29 H 0.05 0.59 7.32 -51.93 -0.38 0.21 16 30 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 31 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 32 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 33 H 0.08 1.06 7.71 -51.93 -0.40 0.66 16 34 H 0.07 0.68 7.02 -51.93 -0.36 0.32 16 35 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.38 2.40 9.10 45.56 0.41 2.82 16 41 H 0.10 2.05 7.71 -52.49 -0.40 1.65 16 42 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 43 H 0.13 3.27 6.19 -52.48 -0.33 2.94 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 45 H 0.11 2.71 7.50 -52.49 -0.39 2.32 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -31.71 372.52 -11.08 -42.79 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.95 Total: 8.88 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: -3.07 Total: -37.56 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.22 Total: -35.71 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -2.27 Total: -49.92 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.60 Total: 52.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.71 -11.08 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.396 kcal (2) G-P(sol) polarization free energy of solvation -31.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds