Wall clock time and date at job start Sat Apr 11 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00254 * 2 1 4 4 C 1.53003 * 109.47296 * 275.29463 * 3 2 1 5 5 H 1.08996 * 110.05087 * 303.90396 * 4 3 2 6 6 C 1.54258 * 110.03062 * 65.31896 * 4 3 2 7 7 C 1.54889 * 104.19481 * 142.89575 * 6 4 3 8 8 C 1.54888 * 102.75170 * 322.05797 * 7 6 4 9 9 C 1.53869 * 110.03108 * 182.48810 * 4 3 2 10 10 H 1.09007 * 110.07525 * 121.40697 * 9 4 3 11 11 O 1.42896 * 110.03739 * 359.97438 * 9 4 3 12 12 S 1.65599 * 119.99923 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40253 * 28.08782 * 12 2 1 14 14 O 1.42102 * 106.40381 * 161.00949 * 12 2 1 15 15 C 1.76208 * 107.21892 * 274.54604 * 12 2 1 16 16 C 1.38657 * 119.87313 * 85.32269 * 15 12 2 17 17 C 1.38604 * 120.50120 * 179.97438 * 16 15 12 18 18 C 1.37641 * 120.24717 * 359.97438 * 17 16 15 19 19 C 1.40697 * 119.74612 * 0.02562 * 18 17 16 20 20 C 1.41396 * 120.24496 * 180.02562 * 19 18 17 21 21 H 1.07995 * 119.99856 * 207.93085 * 20 19 18 22 22 C 1.39945 * 120.00001 * 27.93250 * 20 19 18 23 23 N 1.30825 * 119.99962 * 11.71404 * 22 20 19 24 24 Si 1.86798 * 119.99859 * 191.71879 * 22 20 19 25 25 H 1.48500 * 109.47332 * 90.00000 * 24 22 20 26 26 H 1.48499 * 109.47267 * 209.99968 * 24 22 20 27 27 H 1.48499 * 109.47377 * 329.99935 * 24 22 20 28 28 C 1.37589 * 119.87527 * 265.04551 * 15 12 2 29 29 H 1.08998 * 109.46736 * 90.00031 * 1 2 3 30 30 H 1.08996 * 109.46910 * 210.00118 * 1 2 3 31 31 H 1.08997 * 109.46911 * 330.00425 * 1 2 3 32 32 H 1.08999 * 109.47527 * 155.29293 * 3 2 1 33 33 H 1.09000 * 109.47134 * 35.29181 * 3 2 1 34 34 H 1.09002 * 110.49375 * 24.21858 * 6 4 3 35 35 H 1.09002 * 110.48867 * 261.57334 * 6 4 3 36 36 H 1.09005 * 110.75402 * 80.37470 * 7 6 4 37 37 H 1.08999 * 110.75975 * 203.74171 * 7 6 4 38 38 H 1.09000 * 110.48897 * 156.61845 * 8 7 6 39 39 H 1.08998 * 110.48256 * 279.13673 * 8 7 6 40 40 H 0.96702 * 114.00690 * 181.37892 * 11 9 4 41 41 H 1.07996 * 119.74918 * 359.95629 * 16 15 12 42 42 H 1.07995 * 119.88181 * 179.97438 * 17 16 15 43 43 H 1.08008 * 120.12695 * 180.02562 * 18 17 16 44 44 H 0.97002 * 119.99313 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.12983 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3373 1.7770 -1.4364 5 1 2.8198 1.0204 -2.0552 6 6 0.9486 2.1234 -2.0117 7 6 1.2000 3.3818 -2.8791 8 6 2.2408 4.1694 -2.0452 9 6 3.1589 3.0778 -1.4575 10 1 4.0407 2.9532 -2.0863 11 8 3.5507 3.4311 -0.1295 12 16 2.2930 -1.4341 0.0006 13 8 1.4521 -2.3832 -0.6407 14 8 3.6099 -1.1374 -0.4431 15 6 2.4383 -1.9518 1.6787 16 6 1.4118 -2.6721 2.2706 17 6 1.5126 -3.0862 3.5894 18 6 2.6358 -2.7864 4.3264 19 6 3.6836 -2.0560 3.7362 20 6 4.8423 -1.7426 4.4834 21 1 5.4161 -0.8593 4.2449 22 6 5.2457 -2.5771 5.5319 23 7 4.6969 -3.7556 5.6783 24 14 6.5677 -2.0080 6.7227 25 1 5.9347 -1.2970 7.8624 26 1 7.3180 -3.1853 7.2290 27 1 7.5016 -1.0893 6.0234 28 6 3.5722 -1.6448 2.3949 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 3.1877 1.1166 0.4295 33 1 1.6528 2.0028 0.5937 34 1 0.2477 2.3480 -1.2078 35 1 0.5754 1.3045 -2.6268 36 1 1.6117 3.1058 -3.8499 37 1 0.2830 3.9591 -2.9972 38 1 2.8106 4.8436 -2.6846 39 1 1.7484 4.7262 -1.2480 40 1 4.0543 4.2547 -0.0739 41 1 0.5270 -2.9119 1.6997 42 1 0.7070 -3.6464 4.0405 43 1 2.7125 -3.1104 5.3539 44 1 4.9768 -4.3340 6.4049 45 1 4.3722 -1.0872 1.9307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:35 Heat of formation + Delta-G solvation = -137.866803 kcal Electronic energy + Delta-G solvation = -28124.449213 eV Core-core repulsion = 24232.021194 eV Total energy + Delta-G solvation = -3892.428019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18871 -39.47000 -38.31600 -37.13902 -36.89048 -35.66260 -35.57197 -31.92695 -31.61621 -31.04499 -28.60553 -27.45504 -27.31208 -24.72722 -23.61184 -22.82845 -21.77649 -20.74396 -20.28782 -19.38338 -18.54098 -18.19564 -17.79306 -17.19523 -16.76229 -16.72957 -16.44126 -15.58000 -15.51543 -15.18966 -15.08683 -14.96883 -14.60959 -14.49476 -14.31668 -13.82568 -13.69674 -13.32476 -13.28970 -13.22959 -13.07012 -13.04934 -12.85564 -12.76062 -12.63472 -12.58435 -12.29510 -12.20070 -11.85109 -11.77515 -11.55362 -11.50197 -11.41712 -11.38893 -11.17808 -10.70038 -9.97888 -9.81761 -9.54373 -8.69381 -6.48857 -0.54192 0.38690 0.81590 1.36673 1.45383 1.50588 2.06543 2.18306 2.56900 2.75229 3.34407 3.39526 3.49334 3.65296 3.68084 3.90129 4.04333 4.27577 4.37644 4.39179 4.41739 4.46799 4.57012 4.67542 4.71683 4.80719 4.82506 4.87491 4.90219 4.95756 4.99503 5.04447 5.06285 5.13765 5.19570 5.21954 5.29535 5.39463 5.40427 5.48833 5.53507 5.70758 5.85469 5.93524 6.09185 6.51380 6.79363 6.83165 7.00674 8.28156 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014490 B = 0.003507 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.860769 B = 7981.373397 C = 9278.167332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.993 5.993 3 C 0.146 3.854 4 C -0.114 4.114 5 H 0.063 0.937 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.147 4.147 9 C 0.104 3.896 10 H 0.059 0.941 11 O -0.579 6.579 12 S 2.708 3.292 13 O -0.986 6.986 14 O -0.992 6.992 15 C -0.644 4.644 16 C -0.143 4.143 17 C -0.125 4.125 18 C -0.134 4.134 19 C 0.062 3.938 20 C -0.499 4.499 21 H 0.078 0.922 22 C 0.032 3.968 23 N -0.832 5.832 24 Si 0.989 3.011 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.260 1.260 28 C -0.143 4.143 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.393 0.607 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.291 0.709 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.827 15.126 -10.746 20.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.833 5.833 3 C 0.021 3.979 4 C -0.135 4.135 5 H 0.081 0.919 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.185 4.185 9 C 0.044 3.956 10 H 0.077 0.923 11 O -0.388 6.388 12 S 2.801 3.199 13 O -0.976 6.976 14 O -0.982 6.982 15 C -0.732 4.732 16 C -0.164 4.164 17 C -0.144 4.144 18 C -0.154 4.154 19 C 0.059 3.941 20 C -0.529 4.529 21 H 0.096 0.904 22 C -0.182 4.182 23 N -0.459 5.459 24 Si 0.809 3.191 25 H -0.182 1.182 26 H -0.192 1.192 27 H -0.184 1.184 28 C -0.164 4.164 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.242 0.758 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.101 0.899 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.834 13.932 -11.206 19.521 hybrid contribution 1.135 0.139 1.263 1.704 sum -6.699 14.071 -9.943 18.486 Atomic orbital electron populations 1.21834 0.76622 1.04304 1.03336 1.57262 1.16191 1.20306 1.89495 1.21110 0.96152 0.83675 0.96932 1.22348 0.97765 0.96534 0.96807 0.91857 1.22511 0.94963 0.98302 0.99630 1.22447 0.99485 0.95797 0.98128 1.23056 0.97714 0.97457 1.00232 1.22473 0.96099 0.93459 0.83557 0.92270 1.86542 1.76957 1.47304 1.27947 1.01222 0.72243 0.72664 0.73773 1.93478 1.68666 1.61358 1.74091 1.93478 1.39189 1.84670 1.80876 1.30380 1.02979 1.15006 1.24847 1.20497 0.98086 1.01795 0.96018 1.21184 0.98042 1.00403 0.94739 1.21721 0.92629 1.01008 1.00040 1.18063 0.93334 0.91505 0.91224 1.19861 1.09132 1.09712 1.14165 0.90367 1.26787 0.99520 0.93498 0.98354 1.69799 1.39586 1.07612 1.28893 0.85101 0.77373 0.78920 0.77727 1.18190 1.19193 1.18371 1.20868 0.96445 1.04851 0.94273 0.90766 0.91407 0.88446 0.91864 0.88478 0.90082 0.91385 0.91145 0.89776 0.89949 0.90138 0.75760 0.84925 0.85208 0.86550 0.89859 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.86 8.84 127.77 1.13 2.99 16 2 N -0.99 -29.68 3.13 -539.14 -1.69 -31.37 16 3 C 0.15 4.11 3.82 86.38 0.33 4.44 16 4 C -0.11 -2.70 3.17 -10.07 -0.03 -2.73 16 5 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 6 C -0.12 -2.02 4.96 31.67 0.16 -1.87 16 7 C -0.12 -1.59 6.91 31.88 0.22 -1.37 16 8 C -0.15 -1.93 6.55 31.67 0.21 -1.72 16 9 C 0.10 2.00 4.24 31.32 0.13 2.14 16 10 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 11 O -0.58 -12.01 11.44 -148.98 -1.70 -13.71 16 12 S 2.71 107.13 5.59 -56.49 -0.32 106.81 16 13 O -0.99 -40.89 16.63 -128.00 -2.13 -43.01 16 14 O -0.99 -44.28 15.96 -128.00 -2.04 -46.32 16 15 C -0.64 -29.54 5.96 22.22 0.13 -29.41 16 16 C -0.14 -6.27 9.53 22.46 0.21 -6.06 16 17 C -0.12 -5.67 10.02 22.22 0.22 -5.45 16 18 C -0.13 -7.00 8.67 22.73 0.20 -6.80 16 19 C 0.06 3.41 5.56 -21.29 -0.12 3.29 16 20 C -0.50 -27.30 9.07 23.46 0.21 -27.09 16 21 H 0.08 4.14 7.87 -2.91 -0.02 4.12 16 22 C 0.03 1.64 5.24 85.26 0.45 2.08 16 23 N -0.83 -43.40 10.84 21.83 0.24 -43.16 16 24 Si 0.99 38.27 29.58 68.60 2.03 40.30 16 25 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 26 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 28 C -0.14 -7.43 9.27 22.73 0.21 -7.22 16 29 H 0.07 1.39 7.32 -2.39 -0.02 1.37 16 30 H 0.07 1.56 7.91 -2.39 -0.02 1.55 16 31 H 0.10 1.64 7.84 -2.39 -0.02 1.62 16 32 H 0.06 2.15 7.09 -2.39 -0.02 2.13 16 33 H 0.10 2.40 7.71 -2.39 -0.02 2.38 16 34 H 0.08 1.26 7.02 -2.39 -0.02 1.25 16 35 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.39 4.63 9.10 -74.06 -0.67 3.96 16 41 H 0.13 4.96 7.71 -2.91 -0.02 4.94 16 42 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 43 H 0.12 6.21 6.19 -2.91 -0.02 6.20 16 44 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 45 H 0.11 5.45 7.50 -2.91 -0.02 5.43 16 Total: -1.00 -70.47 372.52 -1.63 -72.09 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.33 Total: 33.13 kcal Atomic # 6 Polarization: -78.42 SS G_CDS: 3.66 Total: -74.76 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.45 Total: -74.53 kcal Atomic # 8 Polarization: -97.18 SS G_CDS: -5.88 Total: -103.05 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 107.13 SS G_CDS: -0.32 Total: 106.81 kcal Total: -70.47 -1.63 -72.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.774 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds