Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08991 * 109.47706 * 2 1 4 4 O 1.42903 * 109.46952 * 119.99866 * 2 1 3 5 5 C 1.53005 * 109.47277 * 239.99596 * 2 1 3 6 6 H 1.09000 * 109.58176 * 43.70910 * 5 2 1 7 7 C 1.53189 * 109.70361 * 283.36036 * 5 2 1 8 8 C 1.53039 * 109.31077 * 185.50338 * 7 5 2 9 9 C 1.53038 * 109.54003 * 61.36638 * 8 7 5 10 10 C 1.53628 * 109.24179 * 298.51267 * 9 8 7 11 11 N 1.46925 * 109.58729 * 163.99725 * 5 2 1 12 12 S 1.65593 * 120.63075 * 353.51660 * 11 5 2 13 13 O 1.42102 * 106.40137 * 169.61491 * 12 11 5 14 14 O 1.42107 * 106.40393 * 36.69412 * 12 11 5 15 15 C 1.76199 * 107.22113 * 283.15303 * 12 11 5 16 16 C 1.38661 * 119.87379 * 99.31164 * 15 12 11 17 17 C 1.38614 * 120.49745 * 180.02562 * 16 15 12 18 18 C 1.37634 * 120.25295 * 359.97438 * 17 16 15 19 19 C 1.40702 * 119.74337 * 359.97438 * 18 17 16 20 20 C 1.41389 * 120.24475 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99963 * 157.96643 * 20 19 18 22 22 C 1.39953 * 120.00047 * 337.68791 * 20 19 18 23 23 N 1.30818 * 119.99810 * 331.88003 * 22 20 19 24 24 Si 1.86799 * 119.99907 * 151.88078 * 22 20 19 25 25 H 1.48501 * 109.47220 * 94.98870 * 24 22 20 26 26 H 1.48494 * 109.46976 * 214.99125 * 24 22 20 27 27 H 1.48504 * 109.47045 * 334.99165 * 24 22 20 28 28 C 1.37596 * 119.87531 * 279.57946 * 15 12 11 29 29 H 1.08999 * 109.47860 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47136 * 300.00882 * 1 2 3 31 31 H 1.09005 * 109.47144 * 60.00031 * 1 2 3 32 32 H 0.96705 * 113.99744 * 59.99613 * 4 2 1 33 33 H 1.09005 * 109.50159 * 305.45625 * 7 5 2 34 34 H 1.09002 * 109.49887 * 65.52115 * 7 5 2 35 35 H 1.09004 * 109.46076 * 181.38204 * 8 7 5 36 36 H 1.08996 * 109.46253 * 301.35472 * 8 7 5 37 37 H 1.09006 * 109.49383 * 58.58130 * 9 8 7 38 38 H 1.08993 * 109.50156 * 178.64658 * 9 8 7 39 39 H 1.09002 * 109.73320 * 295.11521 * 10 9 8 40 40 H 1.08995 * 109.66618 * 174.54954 * 10 9 8 41 41 H 1.07997 * 119.75034 * 0.02562 * 16 15 12 42 42 H 1.08006 * 119.87341 * 180.02562 * 17 16 15 43 43 H 1.07999 * 120.13344 * 180.02562 * 18 17 16 44 44 H 0.96997 * 120.00052 * 179.97438 * 23 22 20 45 45 H 1.07991 * 120.12904 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7214 -1.2492 6 1 1.4619 -0.4028 -2.1166 7 6 1.8980 -2.2355 -1.0654 8 6 2.5349 -2.9521 -2.2583 9 6 4.0254 -2.6112 -2.3239 10 6 4.1901 -1.0971 -2.5256 11 7 3.4587 -0.4013 -1.4581 12 16 4.2170 0.7272 -0.5129 13 8 5.6050 0.6231 -0.7991 14 8 3.6800 0.5817 0.7948 15 6 3.7087 2.3141 -1.0857 16 6 2.7063 3.0010 -0.4178 17 6 2.2959 4.2498 -0.8576 18 6 2.8812 4.8222 -1.9640 19 6 3.9001 4.1348 -2.6489 20 6 4.5090 4.7131 -3.7864 21 1 5.4911 4.3884 -4.0970 22 6 3.8366 5.7022 -4.5134 23 7 2.5287 5.7239 -4.5333 24 14 4.8067 6.9911 -5.4551 25 1 4.9631 6.5590 -6.8672 26 1 4.0816 8.2862 -5.4111 27 1 6.1466 7.1526 -4.8356 28 6 4.3040 2.8645 -2.1974 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7208 -1.5952 1.2330 33 1 2.4011 -2.5395 -0.1475 34 1 0.8416 -2.4972 -1.0050 35 1 2.4136 -4.0291 -2.1421 36 1 2.0479 -2.6290 -3.1784 37 1 4.5085 -2.9115 -1.3941 38 1 4.4833 -3.1407 -3.1593 39 1 3.7838 -0.8086 -3.4950 40 1 5.2465 -0.8333 -2.4767 41 1 2.2417 2.5596 0.4515 42 1 1.5145 4.7761 -0.3295 43 1 2.5603 5.7955 -2.3047 44 1 2.0627 6.4096 -5.0368 45 1 5.0812 2.3258 -2.7188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = -96.013584 kcal Electronic energy + Delta-G solvation = -29349.333973 eV Core-core repulsion = 25458.720846 eV Total energy + Delta-G solvation = -3890.613127 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41726 -37.65795 -37.00289 -35.81694 -35.08194 -33.91048 -32.46538 -31.68654 -30.14944 -29.81526 -29.30164 -25.56062 -24.45959 -24.10738 -21.84213 -21.34666 -20.92611 -20.43239 -18.60299 -17.84236 -16.95232 -16.21424 -16.05647 -15.68120 -15.31569 -15.03964 -14.72233 -14.41999 -14.28409 -14.21478 -13.61625 -13.47980 -13.39073 -13.31257 -12.79159 -12.59199 -12.27365 -11.94715 -11.76741 -11.59643 -11.48948 -11.44565 -11.36717 -11.33241 -11.11081 -11.09833 -11.00675 -10.85998 -10.83779 -10.65928 -10.53932 -10.03878 -9.75647 -9.53237 -9.48481 -9.24827 -8.69632 -8.03668 -7.75774 -7.05324 -4.52664 1.09167 2.21121 2.62434 2.97074 2.98709 3.09042 3.49931 3.79410 4.27988 4.38297 4.44490 4.69213 4.78121 4.83081 4.98469 5.06217 5.19165 5.23325 5.32020 5.38888 5.44346 5.51936 5.66532 5.69009 5.82472 5.83291 5.90513 5.96134 6.00839 6.06020 6.13739 6.15927 6.29712 6.33115 6.39921 6.62687 6.71677 6.76821 6.93687 7.04010 7.21584 7.38891 7.71271 7.77284 7.92066 8.03179 8.36612 8.62471 8.70480 9.91680 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.004030 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.912319 B = 6946.264478 C = 7397.462071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.122 0.878 4 O -0.507 6.507 5 C 0.128 3.872 6 H 0.080 0.920 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.115 3.885 11 N -0.992 5.992 12 S 2.672 3.328 13 O -0.977 6.977 14 O -0.931 6.931 15 C -0.631 4.631 16 C -0.166 4.166 17 C -0.112 4.112 18 C -0.132 4.132 19 C 0.097 3.903 20 C -0.465 4.465 21 H 0.085 0.915 22 C 0.084 3.916 23 N -0.777 5.777 24 Si 0.902 3.098 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.257 1.257 28 C -0.126 4.126 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.345 0.655 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.285 0.715 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 -12.583 1.917 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.005 3.995 3 H 0.139 0.861 4 O -0.310 6.310 5 C 0.021 3.979 6 H 0.098 0.902 7 C -0.173 4.173 8 C -0.152 4.152 9 C -0.170 4.170 10 C -0.010 4.010 11 N -0.829 5.829 12 S 2.769 3.231 13 O -0.968 6.968 14 O -0.921 6.921 15 C -0.721 4.721 16 C -0.187 4.187 17 C -0.131 4.131 18 C -0.152 4.152 19 C 0.093 3.907 20 C -0.493 4.493 21 H 0.103 0.897 22 C -0.137 4.137 23 N -0.401 5.401 24 Si 0.726 3.274 25 H -0.193 1.193 26 H -0.198 1.198 27 H -0.180 1.180 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.190 0.810 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.880 -12.082 2.607 12.955 hybrid contribution -0.448 0.716 -1.323 1.570 sum -4.328 -11.366 1.283 12.230 Atomic orbital electron populations 1.22467 0.95852 1.02214 1.03297 1.22695 0.93525 0.99059 0.84239 0.86078 1.87214 1.75437 1.26473 1.41865 1.21730 0.81541 0.95533 0.99090 0.90200 1.21972 1.00937 0.94756 0.99674 1.21435 0.95781 0.99598 0.98365 1.21946 0.96691 0.95991 1.02378 1.21538 0.97568 0.91634 0.90288 1.57804 1.19301 1.55477 1.50317 1.02462 0.72959 0.73704 0.74010 1.93484 1.30796 1.87016 1.85464 1.93725 1.78454 1.85342 1.34615 1.30026 1.10894 1.22052 1.09158 1.20104 0.99875 0.97523 1.01207 1.20754 0.99530 0.95544 0.97303 1.21397 0.99254 0.99775 0.94733 1.17635 0.90991 0.89864 0.92202 1.19586 1.03330 1.17537 1.08868 0.89726 1.25941 0.94601 0.97552 0.95615 1.69859 1.08761 1.29598 1.31865 0.86390 0.81386 0.79855 0.79797 1.19343 1.19814 1.18027 1.20664 1.01370 0.96378 0.96332 0.92426 0.91282 0.91358 0.80957 0.90703 0.90968 0.91946 0.91773 0.91528 0.90961 0.91373 0.88531 0.86985 0.88452 0.86755 0.90428 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 9.38 37.16 0.35 -1.75 16 2 C 0.06 0.96 2.49 -26.73 -0.07 0.89 16 3 H 0.12 2.13 2.29 -51.89 -0.12 2.02 16 4 O -0.51 -7.88 10.08 -60.38 -0.61 -8.49 16 5 C 0.13 1.73 2.78 -67.60 -0.19 1.54 16 6 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 7 C -0.13 -1.38 4.63 -26.61 -0.12 -1.50 16 8 C -0.11 -1.09 5.88 -26.69 -0.16 -1.24 16 9 C -0.13 -1.41 6.10 -26.39 -0.16 -1.57 16 10 C 0.12 1.58 6.54 -3.48 -0.02 1.56 16 11 N -0.99 -15.70 3.28 -106.23 -0.35 -16.05 16 12 S 2.67 52.93 5.18 -107.50 -0.56 52.37 16 13 O -0.98 -21.53 15.89 -57.17 -0.91 -22.44 16 14 O -0.93 -19.35 11.60 -67.41 -0.78 -20.13 16 15 C -0.63 -14.10 5.79 -39.66 -0.23 -14.33 16 16 C -0.17 -3.65 8.36 -39.29 -0.33 -3.98 16 17 C -0.11 -2.52 10.02 -39.66 -0.40 -2.92 16 18 C -0.13 -3.28 8.76 -38.87 -0.34 -3.62 16 19 C 0.10 2.50 5.57 -106.82 -0.60 1.90 16 20 C -0.47 -11.88 8.99 -37.74 -0.34 -12.22 16 21 H 0.08 2.09 7.99 -52.49 -0.42 1.67 16 22 C 0.08 2.00 4.90 -17.34 -0.08 1.91 16 23 N -0.78 -18.94 11.50 55.55 0.64 -18.31 16 24 Si 0.90 17.74 29.64 -169.99 -5.04 12.70 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 28 C -0.13 -3.07 9.26 -38.87 -0.36 -3.43 16 29 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.35 3.89 6.96 45.56 0.32 4.20 16 33 H 0.07 0.78 6.43 -51.93 -0.33 0.44 16 34 H 0.07 0.59 7.29 -51.93 -0.38 0.21 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 1.42 6.69 -51.93 -0.35 1.07 16 41 H 0.11 2.27 5.93 -52.49 -0.31 1.96 16 42 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 43 H 0.11 2.86 6.40 -52.49 -0.34 2.53 16 44 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 45 H 0.11 2.47 7.84 -52.49 -0.41 2.06 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -30.79 354.37 -10.96 -41.75 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.65 Total: 12.01 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: -3.05 Total: -38.76 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.29 Total: -34.35 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -2.30 Total: -51.06 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.04 Total: 12.70 kcal Atomic # 16 Polarization: 52.93 SS G_CDS: -0.56 Total: 52.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.79 -10.96 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.262 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds